Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 ATG2A-203ENST00000421419 1481 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
CCDC28BQ9BUN5 HTR5A-201ENST00000287907 2912 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
CCDC28BQ9BUN5 ANKRD11-201ENST00000301030 9301 ntAPPRIS P2 TSL 5 BASIC13.73□□□□□ -0.21
CCDC28BQ9BUN5 KIAA1217-203ENST00000376452 6052 ntAPPRIS ALT2 TSL 1 (best) BASIC13.73□□□□□ -0.21
CCDC28BQ9BUN5 SLC35B2-206ENST00000615337 2014 ntTSL 4 BASIC13.73□□□□□ -0.21
CCDC28BQ9BUN5 CCT6P3-201ENST00000419314 3702 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
CCDC28BQ9BUN5 KRT17P4-205ENST00000579946 2555 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
CCDC28BQ9BUN5 WHRN-201ENST00000265134 2847 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
CCDC28BQ9BUN5 FOXN3-201ENST00000261302 2542 ntAPPRIS ALT1 TSL 5 BASIC13.72□□□□□ -0.21
CCDC28BQ9BUN5 GNB1L-201ENST00000329517 6706 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
CCDC28BQ9BUN5 KCNIP3-202ENST00000360990 2798 ntTSL 5 BASIC13.72□□□□□ -0.21
CCDC28BQ9BUN5 PDZRN3-208ENST00000479530 2778 ntTSL 2 BASIC13.72□□□□□ -0.21
CCDC28BQ9BUN5 TMC8-201ENST00000318430 4411 ntAPPRIS P2 TSL 1 (best) BASIC13.72□□□□□ -0.21
CCDC28BQ9BUN5 DRD2-210ENST00000544518 2473 ntAPPRIS ALT1 TSL 1 (best) BASIC13.72□□□□□ -0.21
CCDC28BQ9BUN5 XRCC6-201ENST00000359308 2709 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
CCDC28BQ9BUN5 ZNF185-205ENST00000370270 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC13.72□□□□□ -0.21
CCDC28BQ9BUN5 CDH1-201ENST00000261769 4889 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
CCDC28BQ9BUN5 ZNF197-204ENST00000383745 2935 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
CCDC28BQ9BUN5 PDGFA-201ENST00000354513 1308 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
CCDC28BQ9BUN5 BCL2L11-221ENST00000621302 5224 ntAPPRIS ALT2 TSL 5 BASIC13.72□□□□□ -0.21
CCDC28BQ9BUN5 BCL2L11-222ENST00000622509 5231 ntAPPRIS ALT2 TSL 5 BASIC13.72□□□□□ -0.21
CCDC28BQ9BUN5 STK26-204ENST00000481105 1835 ntTSL 2 BASIC13.72□□□□□ -0.21
CCDC28BQ9BUN5 ADCY4-202ENST00000418030 3353 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
CCDC28BQ9BUN5 DNMT3B-206ENST00000456297 2315 ntTSL 2 BASIC13.72□□□□□ -0.21
CCDC28BQ9BUN5 HARS-207ENST00000504156 3334 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
CCDC28BQ9BUN5 RHCE-205ENST00000349438 1235 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
CCDC28BQ9BUN5 APOA1-204ENST00000375323 1088 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
CCDC28BQ9BUN5 FGF14-202ENST00000376143 744 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
CCDC28BQ9BUN5 TEX26-AS1-201ENST00000411835 1203 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
CCDC28BQ9BUN5 AL139158.2-202ENST00000428151 573 ntTSL 3 BASIC13.72□□□□□ -0.21
CCDC28BQ9BUN5 KDM4A-AS1-204ENST00000439057 686 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
CCDC28BQ9BUN5 CHMP1AP1-201ENST00000445563 662 ntBASIC13.72□□□□□ -0.21
CCDC28BQ9BUN5 AL139010.1-202ENST00000452528 1041 ntTSL 2 BASIC13.72□□□□□ -0.21
CCDC28BQ9BUN5 CDK4-206ENST00000549606 558 ntTSL 2 BASIC13.72□□□□□ -0.21
CCDC28BQ9BUN5 JMJD8-203ENST00000562824 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC13.72□□□□□ -0.21
CCDC28BQ9BUN5 AC025048.1-201ENST00000592317 542 ntTSL 4 BASIC13.72□□□□□ -0.21
CCDC28BQ9BUN5 AC011491.2-201ENST00000599584 447 ntTSL 5 BASIC13.72□□□□□ -0.21
CCDC28BQ9BUN5 ZNF655-225ENST00000626122 705 ntTSL 5 BASIC13.72□□□□□ -0.21
CCDC28BQ9BUN5 AC006453.4-201ENST00000636949 1252 ntBASIC13.72□□□□□ -0.21
CCDC28BQ9BUN5 AL591163.1-201ENST00000641757 987 ntBASIC13.72□□□□□ -0.21
CCDC28BQ9BUN5 NFKB1-201ENST00000226574 4085 ntAPPRIS P3 TSL 1 (best) BASIC13.72□□□□□ -0.21
CCDC28BQ9BUN5 BCL11B-201ENST00000345514 7603 ntAPPRIS ALT2 TSL 1 (best) BASIC13.72□□□□□ -0.21
CCDC28BQ9BUN5 CDC14B-201ENST00000375240 2547 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
CCDC28BQ9BUN5 COG6-202ENST00000416691 5257 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
CCDC28BQ9BUN5 CDH8-201ENST00000299345 3728 ntTSL 5 BASIC13.72□□□□□ -0.21
CCDC28BQ9BUN5 SYBU-204ENST00000408908 2983 ntAPPRIS ALT2 TSL 5 BASIC13.72□□□□□ -0.21
CCDC28BQ9BUN5 PLCXD2-204ENST00000477665 1721 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
CCDC28BQ9BUN5 CARS-AS1-201ENST00000499962 2664 ntTSL 2 BASIC13.72□□□□□ -0.21
CCDC28BQ9BUN5 TIPARP-201ENST00000295924 4109 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
CCDC28BQ9BUN5 COL6A3-206ENST00000409809 8916 ntTSL 5 BASIC13.72□□□□□ -0.21
CCDC28BQ9BUN5 PACSIN2-202ENST00000337959 3149 ntTSL 5 BASIC13.72□□□□□ -0.21
CCDC28BQ9BUN5 COL1A2-213ENST00000620463 4523 ntTSL 5 BASIC13.72□□□□□ -0.21
CCDC28BQ9BUN5 BRMS1-201ENST00000359957 1445 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
CCDC28BQ9BUN5 CAP2-206ENST00000489374 1430 ntTSL 2 BASIC13.72□□□□□ -0.21
CCDC28BQ9BUN5 C11orf87-201ENST00000327419 5884 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
CCDC28BQ9BUN5 GJB1-201ENST00000361726 1637 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
CCDC28BQ9BUN5 SPAG8-202ENST00000396638 1600 ntAPPRIS ALT2 TSL 1 (best) BASIC13.72□□□□□ -0.21
CCDC28BQ9BUN5 SHC1-202ENST00000368445 3472 ntAPPRIS ALT1 TSL 1 (best) BASIC13.72□□□□□ -0.21
CCDC28BQ9BUN5 PAK3-211ENST00000518291 2098 ntTSL 5 BASIC13.71□□□□□ -0.21
CCDC28BQ9BUN5 RBM10-201ENST00000329236 3201 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.21
CCDC28BQ9BUN5 WASHC1-201ENST00000442898 1827 ntAPPRIS P1 TSL 2 BASIC13.71□□□□□ -0.21
CCDC28BQ9BUN5 ACO2-201ENST00000216254 2741 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
CCDC28BQ9BUN5 MAD1L1-201ENST00000265854 2718 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
CCDC28BQ9BUN5 CCDC13-201ENST00000310232 2943 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
CCDC28BQ9BUN5 PGBD5-202ENST00000525115 1569 ntTSL 2 BASIC13.71□□□□□ -0.21
CCDC28BQ9BUN5 UROC1-201ENST00000290868 3149 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
CCDC28BQ9BUN5 REV3L-207ENST00000435970 10943 ntTSL 2 BASIC13.71□□□□□ -0.21
CCDC28BQ9BUN5 ARFIP1-202ENST00000356064 1302 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
CCDC28BQ9BUN5 STAT3-203ENST00000404395 2633 ntAPPRIS ALT1 TSL 1 (best) BASIC13.71□□□□□ -0.21
CCDC28BQ9BUN5 SLC37A4-202ENST00000357590 2356 ntTSL 5 BASIC13.71□□□□□ -0.21
CCDC28BQ9BUN5 NINJ2-201ENST00000305108 1252 ntAPPRIS P3 TSL 1 (best) BASIC13.71□□□□□ -0.21
CCDC28BQ9BUN5 ZBTB12BP-201ENST00000314232 1122 ntBASIC13.71□□□□□ -0.21
CCDC28BQ9BUN5 ZSCAN2-203ENST00000334141 993 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
CCDC28BQ9BUN5 NUDT1-202ENST00000343985 771 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
CCDC28BQ9BUN5 BEX3-203ENST00000372635 805 ntAPPRIS P1 TSL 2 BASIC13.71□□□□□ -0.21
CCDC28BQ9BUN5 KRTAP6-3-201ENST00000391624 636 ntAPPRIS P1 BASIC13.71□□□□□ -0.21
CCDC28BQ9BUN5 IFI27L1-201ENST00000393115 674 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
CCDC28BQ9BUN5 ERBB3-202ENST00000411731 1027 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
CCDC28BQ9BUN5 AL450469.1-201ENST00000418953 461 ntTSL 2 BASIC13.71□□□□□ -0.21
CCDC28BQ9BUN5 NREP-204ENST00000419114 704 ntAPPRIS P1 TSL 2 BASIC13.71□□□□□ -0.21
CCDC28BQ9BUN5 C2orf27AP3-201ENST00000434123 579 ntBASIC13.71□□□□□ -0.21
CCDC28BQ9BUN5 AL355994.2-201ENST00000447882 704 ntBASIC13.71□□□□□ -0.21
CCDC28BQ9BUN5 TSPY16P-201ENST00000449843 468 ntBASIC13.71□□□□□ -0.21
CCDC28BQ9BUN5 CCKBR-202ENST00000525014 792 ntTSL 4 BASIC13.71□□□□□ -0.21
CCDC28BQ9BUN5 BX927359.1-201ENST00000556073 543 ntTSL 2 BASIC13.71□□□□□ -0.21
CCDC28BQ9BUN5 AC140912.1-201ENST00000577171 1054 ntBASIC13.71□□□□□ -0.21
CCDC28BQ9BUN5 RAB3D-202ENST00000589655 924 ntAPPRIS P1 TSL 2 BASIC13.71□□□□□ -0.21
CCDC28BQ9BUN5 SCN1B-204ENST00000596348 1176 ntTSL 5 BASIC13.71□□□□□ -0.21
CCDC28BQ9BUN5 AC010319.3-201ENST00000597028 470 ntBASIC13.71□□□□□ -0.21
CCDC28BQ9BUN5 ACYP2-209ENST00000607452 831 ntTSL 2 BASIC13.71□□□□□ -0.21
CCDC28BQ9BUN5 MIR6720-201ENST00000611664 98 ntBASIC13.71□□□□□ -0.21
CCDC28BQ9BUN5 AL354718.3-201ENST00000616414 581 ntBASIC13.71□□□□□ -0.21
CCDC28BQ9BUN5 NDUFB1-207ENST00000617122 417 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
CCDC28BQ9BUN5 CR382287.1-201ENST00000623954 586 ntBASIC13.71□□□□□ -0.21
CCDC28BQ9BUN5 PARP3-201ENST00000398755 2336 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.21
CCDC28BQ9BUN5 TRIM4-201ENST00000349062 3374 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.21
CCDC28BQ9BUN5 TAF9-202ENST00000328663 1461 ntAPPRIS P2 TSL 2 BASIC13.71□□□□□ -0.21
CCDC28BQ9BUN5 PIGV-202ENST00000374145 2713 ntAPPRIS P1 TSL 2 BASIC13.71□□□□□ -0.21
CCDC28BQ9BUN5 KIRREL1-204ENST00000368173 7519 ntTSL 2 BASIC13.71□□□□□ -0.21
CCDC28BQ9BUN5 ZIK1-204ENST00000597850 4181 ntAPPRIS P3 TSL 1 (best) BASIC13.71□□□□□ -0.21
Retrieved 100 of 98,524 protein–RNA pairs in 41.7 ms