Protein–RNA interactions for Protein: Q92889

ERCC4, DNA repair endonuclease XPF, humanhuman

Predicted RBP Predictions only

Length 916 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC4Q92889 LINC00339-208ENST00000634934 1518 ntTSL 5 BASIC16.01■□□□□ 0.15
ERCC4Q92889 TMX4-201ENST00000246024 6169 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
ERCC4Q92889 NPFF-201ENST00000267017 592 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
ERCC4Q92889 VHLL-201ENST00000339922 676 ntAPPRIS P1 BASIC16.01■□□□□ 0.15
ERCC4Q92889 PRTFDC1-202ENST00000376376 741 ntTSL 2 BASIC16.01■□□□□ 0.15
ERCC4Q92889 AC068898.1-201ENST00000440750 335 ntTSL 3 BASIC16.01■□□□□ 0.15
ERCC4Q92889 AC124944.1-201ENST00000448113 625 ntTSL 2 BASIC16.01■□□□□ 0.15
ERCC4Q92889 AC243562.3-201ENST00000559866 1212 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
ERCC4Q92889 ORC6-206ENST00000568364 888 ntTSL 5 BASIC16.01■□□□□ 0.15
ERCC4Q92889 PAM16-211ENST00000575848 518 ntTSL 3 BASIC16.01■□□□□ 0.15
ERCC4Q92889 PAM16-214ENST00000576217 493 ntAPPRIS P1 TSL 5 BASIC16.01■□□□□ 0.15
ERCC4Q92889 DHPS-207ENST00000594424 1172 ntTSL 3 BASIC16.01■□□□□ 0.15
ERCC4Q92889 LCN8-205ENST00000612714 638 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
ERCC4Q92889 IGHV1OR21-1-201ENST00000622028 353 ntAPPRIS P1 BASIC16.01■□□□□ 0.15
ERCC4Q92889 DDX5-235ENST00000630471 473 ntTSL 4 BASIC16.01■□□□□ 0.15
ERCC4Q92889 LINC01672-205ENST00000635092 633 ntTSL 5 BASIC16.01■□□□□ 0.15
ERCC4Q92889 ZNF263-202ENST00000538765 1721 ntTSL 2 BASIC16.01■□□□□ 0.15
ERCC4Q92889 TOMM40L-209ENST00000545897 2807 ntTSL 2 BASIC16.01■□□□□ 0.15
ERCC4Q92889 PPARGC1B-202ENST00000360453 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
ERCC4Q92889 LMBRD2-201ENST00000296603 8185 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
ERCC4Q92889 RIMS1-218ENST00000522291 3876 ntTSL 5 BASIC16.01■□□□□ 0.15
ERCC4Q92889 LSM14A-201ENST00000433627 3424 ntAPPRIS ALT1 TSL 1 (best) BASIC16.01■□□□□ 0.15
ERCC4Q92889 ZNF721-205ENST00000511833 2966 ntAPPRIS P1 TSL 4 BASIC16.01■□□□□ 0.15
ERCC4Q92889 AC021218.1-201ENST00000377722 2536 ntTSL 2 BASIC16.01■□□□□ 0.15
ERCC4Q92889 RASA4CP-203ENST00000446874 3193 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
ERCC4Q92889 MKS1-201ENST00000313863 2091 ntTSL 5 BASIC16.01■□□□□ 0.15
ERCC4Q92889 HERPUD1-204ENST00000439977 2946 ntAPPRIS P3 TSL 1 (best) BASIC16.01■□□□□ 0.15
ERCC4Q92889 AGAP2-203ENST00000547588 3579 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
ERCC4Q92889 MUC20-203ENST00000436408 2463 ntAPPRIS ALT2 TSL 5 BASIC16.01■□□□□ 0.15
ERCC4Q92889 DUOX2-205ENST00000603300 6345 ntAPPRIS P2 TSL 1 (best) BASIC16.01■□□□□ 0.15
ERCC4Q92889 LAMB2-201ENST00000305544 5643 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
ERCC4Q92889 DRD2-201ENST00000346454 2433 ntTSL 1 (best) BASIC16■□□□□ 0.15
ERCC4Q92889 CYB5D2-203ENST00000575251 1588 ntTSL 2 BASIC16■□□□□ 0.15
ERCC4Q92889 NINL-203ENST00000422516 3801 ntAPPRIS ALT2 TSL 1 (best) BASIC16■□□□□ 0.15
ERCC4Q92889 RUFY4-201ENST00000344321 2352 ntAPPRIS P1 TSL 5 BASIC16■□□□□ 0.15
ERCC4Q92889 TMEM25-204ENST00000359862 2395 ntAPPRIS ALT2 TSL 1 (best) BASIC16■□□□□ 0.15
ERCC4Q92889 TUBB4AP1-201ENST00000450755 1325 ntBASIC16■□□□□ 0.15
ERCC4Q92889 ALG3-205ENST00000445626 1533 ntTSL 1 (best) BASIC16■□□□□ 0.15
ERCC4Q92889 GUCY1B3-205ENST00000505764 2456 ntTSL 2 BASIC16■□□□□ 0.15
ERCC4Q92889 NPPC-201ENST00000295440 500 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
ERCC4Q92889 AC092614.1-201ENST00000419640 909 ntTSL 3 BASIC16■□□□□ 0.15
ERCC4Q92889 KIF9-205ENST00000432493 633 ntTSL 1 (best) BASIC16■□□□□ 0.15
ERCC4Q92889 Z98749.2-207ENST00000443658 679 ntTSL 2 BASIC16■□□□□ 0.15
ERCC4Q92889 RPL35A-205ENST00000448864 549 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
ERCC4Q92889 KRT17P7-201ENST00000451704 1104 ntBASIC16■□□□□ 0.15
ERCC4Q92889 CTBP2P5-201ENST00000454986 1264 ntBASIC16■□□□□ 0.15
ERCC4Q92889 MRAS-205ENST00000474559 856 ntAPPRIS P1 TSL 3 BASIC16■□□□□ 0.15
ERCC4Q92889 DRAP1-208ENST00000532933 751 ntTSL 1 (best) BASIC16■□□□□ 0.15
ERCC4Q92889 AC003686.1-201ENST00000550956 1034 ntBASIC16■□□□□ 0.15
ERCC4Q92889 AL512310.5-201ENST00000551999 515 ntBASIC16■□□□□ 0.15
ERCC4Q92889 AL160314.3-201ENST00000556041 767 ntBASIC16■□□□□ 0.15
ERCC4Q92889 AC126696.1-201ENST00000561567 756 ntTSL 3 BASIC16■□□□□ 0.15
ERCC4Q92889 MIR22HG-212ENST00000577164 931 ntTSL 4 BASIC16■□□□□ 0.15
ERCC4Q92889 MIR4741-201ENST00000579822 90 ntBASIC16■□□□□ 0.15
ERCC4Q92889 C19orf53-206ENST00000593274 491 ntTSL 2 BASIC16■□□□□ 0.15
ERCC4Q92889 H2BFM-203ENST00000598335 465 ntAPPRIS P1 TSL 5 BASIC16■□□□□ 0.15
ERCC4Q92889 RC3H2-205ENST00000423239 3623 ntTSL 5 BASIC16■□□□□ 0.15
ERCC4Q92889 NEU3-201ENST00000294064 6728 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
ERCC4Q92889 ATN1-201ENST00000356654 4351 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
ERCC4Q92889 KCNJ9-201ENST00000368088 4170 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
ERCC4Q92889 TWSG1-201ENST00000262120 3756 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
ERCC4Q92889 MBTD1-201ENST00000376381 1420 ntTSL 1 (best) BASIC16■□□□□ 0.15
ERCC4Q92889 BCL2L11-221ENST00000621302 5224 ntAPPRIS ALT2 TSL 5 BASIC16■□□□□ 0.15
ERCC4Q92889 BCL2L11-222ENST00000622509 5231 ntAPPRIS ALT2 TSL 5 BASIC16■□□□□ 0.15
ERCC4Q92889 GOSR2-203ENST00000415811 2171 ntTSL 5 BASIC16■□□□□ 0.15
ERCC4Q92889 PCDHB19P-202ENST00000625133 2914 ntBASIC16■□□□□ 0.15
ERCC4Q92889 CELSR1-201ENST00000262738 11389 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
ERCC4Q92889 AMDHD2-202ENST00000302956 3273 ntTSL 1 (best) BASIC16■□□□□ 0.15
ERCC4Q92889 NUP62CL-201ENST00000372466 1755 ntTSL 1 (best) BASIC16■□□□□ 0.15
ERCC4Q92889 TRMT1L-201ENST00000367506 4392 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
ERCC4Q92889 BCCIP-202ENST00000299130 2337 ntTSL 1 (best) BASIC16■□□□□ 0.15
ERCC4Q92889 SDF2-201ENST00000247020 1568 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
ERCC4Q92889 TRMT10B-207ENST00000537911 2108 ntTSL 2 BASIC16■□□□□ 0.15
ERCC4Q92889 TRIM69-206ENST00000559390 2486 ntAPPRIS P1 TSL 2 BASIC16■□□□□ 0.15
ERCC4Q92889 SLC1A1-201ENST00000262352 3722 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
ERCC4Q92889 MKRN1-201ENST00000255977 3151 ntAPPRIS P3 TSL 1 (best) BASIC15.99■□□□□ 0.15
ERCC4Q92889 CNBP-208ENST00000504813 1549 ntAPPRIS ALT1 TSL 2 BASIC15.99■□□□□ 0.15
ERCC4Q92889 KY-202ENST00000503669 2003 ntAPPRIS ALT2 TSL 1 (best) BASIC15.99■□□□□ 0.15
ERCC4Q92889 SH2D7-202ENST00000409568 2162 ntTSL 5 BASIC15.99■□□□□ 0.15
ERCC4Q92889 RCC2P1-201ENST00000452257 1476 ntBASIC15.99■□□□□ 0.15
ERCC4Q92889 GSE1-203ENST00000405402 4366 ntAPPRIS ALT2 TSL 1 (best) BASIC15.99■□□□□ 0.15
ERCC4Q92889 DPP8-204ENST00000358939 2822 ntTSL 2 BASIC15.99■□□□□ 0.15
ERCC4Q92889 ARFIP1-203ENST00000405727 1601 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
ERCC4Q92889 ABCD1P2-201ENST00000429313 1601 ntBASIC15.99■□□□□ 0.15
ERCC4Q92889 INCENP-201ENST00000278849 3698 ntAPPRIS P3 TSL 5 BASIC15.99■□□□□ 0.15
ERCC4Q92889 LINC01257-201ENST00000376678 2473 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
ERCC4Q92889 MASP2-202ENST00000400898 726 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
ERCC4Q92889 MPV17-206ENST00000402722 827 ntTSL 3 BASIC15.99■□□□□ 0.15
ERCC4Q92889 HIST1H2BPS3-201ENST00000419683 341 ntBASIC15.99■□□□□ 0.15
ERCC4Q92889 AC006122.1-201ENST00000493323 440 ntBASIC15.99■□□□□ 0.15
ERCC4Q92889 AC022217.1-201ENST00000521069 738 ntBASIC15.99■□□□□ 0.15
ERCC4Q92889 LINC01848-201ENST00000523446 518 ntTSL 3 BASIC15.99■□□□□ 0.15
ERCC4Q92889 AC113192.2-201ENST00000525320 308 ntTSL 3 BASIC15.99■□□□□ 0.15
ERCC4Q92889 PLEKHB1-206ENST00000535129 1049 ntAPPRIS ALT1 TSL 2 BASIC15.99■□□□□ 0.15
ERCC4Q92889 C1RL-212ENST00000545337 813 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
ERCC4Q92889 SNX29P1-201ENST00000548357 1007 ntBASIC15.99■□□□□ 0.15
ERCC4Q92889 AC008050.1-201ENST00000554926 632 ntTSL 3 BASIC15.99■□□□□ 0.15
ERCC4Q92889 AC126696.2-201ENST00000563687 522 ntTSL 3 BASIC15.99■□□□□ 0.15
ERCC4Q92889 GFER-204ENST00000567719 483 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
ERCC4Q92889 NAA38-206ENST00000576384 424 ntTSL 2 BASIC15.99■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 51.3 ms