Protein–RNA interactions for Protein: P58872

RHBDL3, Rhomboid-related protein 3, humanhuman

Predictions only

Length 404 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RHBDL3P58872 CLCC1-202ENST00000348264 1124 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
RHBDL3P58872 RNA5SP491-201ENST00000362936 118 ntBASIC16.33■□□□□ 0.2
RHBDL3P58872 FAM213A-204ENST00000372188 829 ntAPPRIS P1 TSL 2 BASIC16.33■□□□□ 0.2
RHBDL3P58872 AC012506.1-201ENST00000423706 525 ntTSL 4 BASIC16.33■□□□□ 0.2
RHBDL3P58872 NAA60-205ENST00000424546 1149 ntTSL 2 BASIC16.33■□□□□ 0.2
RHBDL3P58872 TAGLN3-203ENST00000455401 1164 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
RHBDL3P58872 AL445471.1-201ENST00000456316 820 ntTSL 5 BASIC16.33■□□□□ 0.2
RHBDL3P58872 AC104212.2-201ENST00000478813 628 ntBASIC16.33■□□□□ 0.2
RHBDL3P58872 CALCA-205ENST00000486207 851 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.2
RHBDL3P58872 LINC02252-201ENST00000565706 487 ntTSL 3 BASIC16.33■□□□□ 0.2
RHBDL3P58872 KRT16P3-202ENST00000580113 1012 ntTSL 3 BASIC16.33■□□□□ 0.2
RHBDL3P58872 MBP-238ENST00000580402 915 ntTSL 5 BASIC16.33■□□□□ 0.2
RHBDL3P58872 KRT16P1-203ENST00000581027 1012 ntTSL 5 BASIC16.33■□□□□ 0.2
RHBDL3P58872 APOC1-209ENST00000592885 562 ntTSL 3 BASIC16.33■□□□□ 0.2
RHBDL3P58872 OR2T11-201ENST00000625105 1072 ntAPPRIS P1 BASIC16.33■□□□□ 0.2
RHBDL3P58872 AC139713.2-207ENST00000641556 1292 ntBASIC16.33■□□□□ 0.2
RHBDL3P58872 GDAP1L1-208ENST00000617075 2645 ntTSL 5 BASIC16.33■□□□□ 0.2
RHBDL3P58872 LINC00470-210ENST00000584090 1334 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
RHBDL3P58872 CASP2-207ENST00000619992 4006 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
RHBDL3P58872 ZNF276-201ENST00000289816 4589 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
RHBDL3P58872 KLKP1-203ENST00000600104 1532 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
RHBDL3P58872 SFSWAP-210ENST00000541286 3219 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
RHBDL3P58872 CASP8-212ENST00000432109 1629 ntAPPRIS P4 TSL 5 BASIC16.33■□□□□ 0.2
RHBDL3P58872 SLC13A5-202ENST00000381074 1738 ntTSL 2 BASIC16.33■□□□□ 0.2
RHBDL3P58872 GUCY2EP-203ENST00000531117 1918 ntBASIC16.33■□□□□ 0.2
RHBDL3P58872 PAPSS2-202ENST00000456849 3856 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
RHBDL3P58872 NOP58-201ENST00000264279 2046 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
RHBDL3P58872 ARMCX3-203ENST00000471229 2051 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
RHBDL3P58872 FAM156A-208ENST00000615092 2098 ntAPPRIS P2 TSL 5 BASIC16.33■□□□□ 0.2
RHBDL3P58872 TDP2-201ENST00000341060 2120 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
RHBDL3P58872 KBTBD4-202ENST00000430070 2372 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
RHBDL3P58872 ARHGEF1-201ENST00000337665 3171 ntAPPRIS P4 TSL 1 (best) BASIC16.32■□□□□ 0.2
RHBDL3P58872 ZBTB7B-202ENST00000368426 3594 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
RHBDL3P58872 STAMBPL1-204ENST00000371927 4184 ntTSL 2 BASIC16.32■□□□□ 0.2
RHBDL3P58872 CD68-201ENST00000250092 1878 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
RHBDL3P58872 TNNI2-201ENST00000252898 678 ntAPPRIS P3 TSL 3 BASIC16.32■□□□□ 0.2
RHBDL3P58872 ABCF3-201ENST00000292808 2453 ntAPPRIS ALT1 TSL 2 BASIC16.32■□□□□ 0.2
RHBDL3P58872 ADORA1-201ENST00000309502 2896 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
RHBDL3P58872 DPYSL4-201ENST00000338492 2729 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
RHBDL3P58872 PSEN2-202ENST00000366783 2306 ntAPPRIS P3 TSL 5 BASIC16.32■□□□□ 0.2
RHBDL3P58872 TATDN3-202ENST00000366974 2389 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
RHBDL3P58872 PGLYRP4-202ENST00000368739 2116 ntAPPRIS ALT1 TSL 5 BASIC16.32■□□□□ 0.2
RHBDL3P58872 APCDD1L-201ENST00000371149 3426 ntAPPRIS P2 TSL 1 (best) BASIC16.32■□□□□ 0.2
RHBDL3P58872 WFDC5-202ENST00000372789 1018 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
RHBDL3P58872 SOCS5-202ENST00000394861 4058 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
RHBDL3P58872 HLA-DMA-202ENST00000395303 1007 ntBASIC16.32■□□□□ 0.2
RHBDL3P58872 RBM4-203ENST00000398692 921 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
RHBDL3P58872 ETNPPL-202ENST00000411864 2028 ntAPPRIS ALT1 TSL 1 (best) BASIC16.32■□□□□ 0.2
RHBDL3P58872 AL929302.1-201ENST00000426556 871 ntBASIC16.32■□□□□ 0.2
RHBDL3P58872 LAMP5-202ENST00000427562 1309 ntTSL 2 BASIC16.32■□□□□ 0.2
RHBDL3P58872 PPT1-203ENST00000433473 2267 ntAPPRIS ALT1 TSL 1 (best) BASIC16.32■□□□□ 0.2
RHBDL3P58872 SENP6-205ENST00000447266 6501 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
RHBDL3P58872 AL512288.1-201ENST00000448015 491 ntTSL 5 BASIC16.32■□□□□ 0.2
RHBDL3P58872 MKRN2-203ENST00000448482 1679 ntTSL 5 BASIC16.32■□□□□ 0.2
RHBDL3P58872 AL451000.1-201ENST00000451300 1186 ntBASIC16.32■□□□□ 0.2
RHBDL3P58872 AC025594.1-201ENST00000469533 543 ntBASIC16.32■□□□□ 0.2
RHBDL3P58872 AC083801.1-201ENST00000491689 358 ntBASIC16.32■□□□□ 0.2
RHBDL3P58872 RBM4-207ENST00000506523 654 ntTSL 3 BASIC16.32■□□□□ 0.2
RHBDL3P58872 TNIP1-214ENST00000522226 2238 ntAPPRIS P3 TSL 2 BASIC16.32■□□□□ 0.2
RHBDL3P58872 CMTM1-219ENST00000533953 934 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
RHBDL3P58872 GPR132-203ENST00000539291 2779 ntAPPRIS P3 TSL 2 BASIC16.32■□□□□ 0.2
RHBDL3P58872 DENND1C-202ENST00000543576 2395 ntAPPRIS ALT2 TSL 2 BASIC16.32■□□□□ 0.2
RHBDL3P58872 PDE1B-207ENST00000550620 2150 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
RHBDL3P58872 TMEM117-207ENST00000551577 2643 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
RHBDL3P58872 KRT4-204ENST00000551956 2576 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
RHBDL3P58872 AC026470.4-201ENST00000565812 308 ntTSL 3 BASIC16.32■□□□□ 0.2
RHBDL3P58872 AC099063.4-201ENST00000641099 1602 ntBASIC16.32■□□□□ 0.2
RHBDL3P58872 TSC2-201ENST00000219476 6156 ntAPPRIS P3 TSL 5 BASIC16.32■□□□□ 0.2
RHBDL3P58872 FAM208A-201ENST00000355628 5239 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
RHBDL3P58872 TNFRSF11A-206ENST00000617039 3756 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
RHBDL3P58872 TMCO3-202ENST00000434316 3050 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
RHBDL3P58872 FGFR1OP2-201ENST00000229395 2924 ntTSL 2 BASIC16.32■□□□□ 0.2
RHBDL3P58872 RNF26-201ENST00000311413 2787 ntAPPRIS P1 BASIC16.32■□□□□ 0.2
RHBDL3P58872 ATE1-203ENST00000369043 4900 ntAPPRIS ALT1 TSL 1 (best) BASIC16.31■□□□□ 0.2
RHBDL3P58872 UBE2V1-222ENST00000557021 2258 ntTSL 5 BASIC16.31■□□□□ 0.2
RHBDL3P58872 PLIN3-207ENST00000592528 2154 ntTSL 2 BASIC16.31■□□□□ 0.2
RHBDL3P58872 FBLN2-203ENST00000404922 4318 ntAPPRIS P4 TSL 5 BASIC16.31■□□□□ 0.2
RHBDL3P58872 SHISA9-201ENST00000423335 4043 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
RHBDL3P58872 GPSM1-205ENST00000440944 3633 ntAPPRIS P2 TSL 5 BASIC16.31■□□□□ 0.2
RHBDL3P58872 SERPINA13P-201ENST00000469935 1718 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
RHBDL3P58872 RIMS1-210ENST00000491071 5047 ntTSL 5 BASIC16.31■□□□□ 0.2
RHBDL3P58872 PWWP2A-201ENST00000307063 3346 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
RHBDL3P58872 TRIM46-210ENST00000545012 2979 ntTSL 2 BASIC16.31■□□□□ 0.2
RHBDL3P58872 TAF1C-216ENST00000566732 2972 ntAPPRIS ALT2 TSL 2 BASIC16.31■□□□□ 0.2
RHBDL3P58872 BMP3-201ENST00000282701 5734 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
RHBDL3P58872 TMEM9B-202ENST00000525069 1433 ntTSL 2 BASIC16.31■□□□□ 0.2
RHBDL3P58872 GNAO1-205ENST00000563661 1351 ntTSL 2 BASIC16.31■□□□□ 0.2
RHBDL3P58872 LCN6-201ENST00000341206 717 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
RHBDL3P58872 ZNF286A-201ENST00000395893 654 ntTSL 3 BASIC16.31■□□□□ 0.2
RHBDL3P58872 PGAM1P11-201ENST00000416729 680 ntBASIC16.31■□□□□ 0.2
RHBDL3P58872 AC103702.2-203ENST00000425510 379 ntTSL 5 BASIC16.31■□□□□ 0.2
RHBDL3P58872 AL355482.2-201ENST00000428646 1145 ntTSL 2 BASIC16.31■□□□□ 0.2
RHBDL3P58872 AC093609.1-201ENST00000434020 952 ntTSL 2 BASIC16.31■□□□□ 0.2
RHBDL3P58872 AC078785.1-204ENST00000460707 764 ntTSL 3 BASIC16.31■□□□□ 0.2
RHBDL3P58872 VEGFA-219ENST00000518824 606 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
RHBDL3P58872 LINC00301-203ENST00000527161 749 ntTSL 2 BASIC16.31■□□□□ 0.2
RHBDL3P58872 AC078814.4-201ENST00000546650 327 ntBASIC16.31■□□□□ 0.2
RHBDL3P58872 KCCAT198-201ENST00000549251 549 ntTSL 4 BASIC16.31■□□□□ 0.2
RHBDL3P58872 AL139316.1-201ENST00000555643 568 ntTSL 3 BASIC16.31■□□□□ 0.2
RHBDL3P58872 APOPT1-215ENST00000556253 783 ntTSL 3 BASIC16.31■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 62.8 ms