Protein–RNA interactions for Protein: P55854

SUMO3, Small ubiquitin-related modifier 3, humanhuman

Predicted RBP Predictions only

Length 103 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SUMO3P55854 VWA5B2-202ENST00000426955 4120 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
SUMO3P55854 NUTM2G-201ENST00000354649 2851 ntAPPRIS P3 TSL 5 BASIC12.69□□□□□ -0.38
SUMO3P55854 TLN1-201ENST00000314888 8823 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
SUMO3P55854 GOT2-202ENST00000434819 1615 ntTSL 2 BASIC12.69□□□□□ -0.38
SUMO3P55854 PLAT-211ENST00000524009 1613 ntTSL 2 BASIC12.69□□□□□ -0.38
SUMO3P55854 KIAA1217-203ENST00000376452 6052 ntAPPRIS ALT2 TSL 1 (best) BASIC12.69□□□□□ -0.38
SUMO3P55854 SLC1A7-202ENST00000371494 2637 ntAPPRIS P3 TSL 1 (best) BASIC12.69□□□□□ -0.38
SUMO3P55854 MAPT-IT1-201ENST00000624111 3016 ntBASIC12.69□□□□□ -0.38
SUMO3P55854 GTF2I-215ENST00000614986 4415 ntAPPRIS ALT1 TSL 1 (best) BASIC12.69□□□□□ -0.38
SUMO3P55854 GTF2I-221ENST00000621734 4412 ntAPPRIS ALT2 TSL 1 (best) BASIC12.69□□□□□ -0.38
SUMO3P55854 NAPEPLD-201ENST00000341533 4972 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
SUMO3P55854 VAMP2-201ENST00000316509 2153 ntAPPRIS P3 TSL 1 (best) BASIC12.69□□□□□ -0.38
SUMO3P55854 TRAF1-201ENST00000373887 6324 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
SUMO3P55854 CCNA1-204ENST00000630422 1751 ntAPPRIS P1 TSL 2 BASIC12.69□□□□□ -0.38
SUMO3P55854 RNF123-203ENST00000433785 1555 ntTSL 5 BASIC12.69□□□□□ -0.38
SUMO3P55854 NRADDP-202ENST00000641269 1585 ntBASIC12.69□□□□□ -0.38
SUMO3P55854 PPIL3-201ENST00000286175 1370 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
SUMO3P55854 POLR1C-203ENST00000372389 1355 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
SUMO3P55854 ANXA8L1-202ENST00000611655 1398 ntTSL 2 BASIC12.69□□□□□ -0.38
SUMO3P55854 GNAO1-201ENST00000262493 3337 ntAPPRIS P5 TSL 1 (best) BASIC12.68□□□□□ -0.38
SUMO3P55854 TMEM87B-201ENST00000283206 5212 ntAPPRIS P1 TSL 2 BASIC12.68□□□□□ -0.38
SUMO3P55854 AC087386.2-201ENST00000623212 4637 ntBASIC12.68□□□□□ -0.38
SUMO3P55854 RASGEF1A-202ENST00000374459 3264 ntAPPRIS ALT2 TSL 2 BASIC12.68□□□□□ -0.38
SUMO3P55854 TMUB2-202ENST00000357984 1921 ntAPPRIS P3 TSL 1 (best) BASIC12.68□□□□□ -0.38
SUMO3P55854 KLK6-201ENST00000310157 1511 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
SUMO3P55854 AC005840.4-201ENST00000541242 2494 ntBASIC12.68□□□□□ -0.38
SUMO3P55854 LIG1-202ENST00000427526 3027 ntAPPRIS ALT2 TSL 2 BASIC12.68□□□□□ -0.38
SUMO3P55854 ARHGAP9-213ENST00000550288 2818 ntTSL 2 BASIC12.68□□□□□ -0.38
SUMO3P55854 FRMD4B-201ENST00000398540 5060 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
SUMO3P55854 SLC6A9-207ENST00000475075 1881 ntTSL 2 BASIC12.68□□□□□ -0.38
SUMO3P55854 KIF3C-202ENST00000405914 3180 ntAPPRIS P1 TSL 5 BASIC12.68□□□□□ -0.38
SUMO3P55854 AC114490.1-201ENST00000417456 3163 ntTSL 2 BASIC12.68□□□□□ -0.38
SUMO3P55854 ICA1-207ENST00000406470 2440 ntAPPRIS P3 TSL 1 (best) BASIC12.68□□□□□ -0.38
SUMO3P55854 MAN2B2-202ENST00000504248 2968 ntTSL 2 BASIC12.68□□□□□ -0.38
SUMO3P55854 PRDM16-206ENST00000511072 4282 ntAPPRIS ALT2 TSL 5 BASIC12.68□□□□□ -0.38
SUMO3P55854 MYBBP1A-201ENST00000254718 4807 ntAPPRIS P3 TSL 1 (best) BASIC12.68□□□□□ -0.38
SUMO3P55854 RNF214-201ENST00000300650 2755 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
SUMO3P55854 LIMD1-202ENST00000440097 2773 ntTSL 5 BASIC12.68□□□□□ -0.38
SUMO3P55854 ACTL7A-201ENST00000333999 1494 ntAPPRIS P1 BASIC12.68□□□□□ -0.38
SUMO3P55854 PGAP2-202ENST00000300730 1843 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
SUMO3P55854 PGAP2-203ENST00000396986 1837 ntTSL 2 BASIC12.68□□□□□ -0.38
SUMO3P55854 THOC6-201ENST00000253952 1246 ntTSL 2 BASIC12.68□□□□□ -0.38
SUMO3P55854 LIMS1-201ENST00000332345 1235 ntAPPRIS P3 TSL 1 (best) BASIC12.68□□□□□ -0.38
SUMO3P55854 LEMD1-205ENST00000367154 786 ntTSL 2 BASIC12.68□□□□□ -0.38
SUMO3P55854 UPK1A-202ENST00000379013 1016 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
SUMO3P55854 CALCA-203ENST00000396372 581 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
SUMO3P55854 AL137058.1-201ENST00000418237 673 ntTSL 5 BASIC12.68□□□□□ -0.38
SUMO3P55854 BCYRN1-201ENST00000418539 200 ntBASIC12.68□□□□□ -0.38
SUMO3P55854 AC060234.1-201ENST00000422966 474 ntTSL 3 BASIC12.68□□□□□ -0.38
SUMO3P55854 NSD2-209ENST00000436793 835 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
SUMO3P55854 HCFC1-AS1-201ENST00000438219 350 ntTSL 3 BASIC12.68□□□□□ -0.38
SUMO3P55854 CEP164P1-201ENST00000455142 418 ntBASIC12.68□□□□□ -0.38
SUMO3P55854 AC011247.2-201ENST00000457097 233 ntTSL 4 BASIC12.68□□□□□ -0.38
SUMO3P55854 SCARNA12-201ENST00000459155 270 ntBASIC12.68□□□□□ -0.38
SUMO3P55854 RN7SL81P-201ENST00000493781 261 ntBASIC12.68□□□□□ -0.38
SUMO3P55854 CHMP4BP1-201ENST00000556017 588 ntBASIC12.68□□□□□ -0.38
SUMO3P55854 AC104758.2-201ENST00000562716 483 ntTSL 3 BASIC12.68□□□□□ -0.38
SUMO3P55854 IGHV3OR16-16-201ENST00000563644 343 ntBASIC12.68□□□□□ -0.38
SUMO3P55854 ZSCAN32-210ENST00000573830 668 ntTSL 3 BASIC12.68□□□□□ -0.38
SUMO3P55854 AP005264.5-201ENST00000590066 467 ntBASIC12.68□□□□□ -0.38
SUMO3P55854 WASHC2C-201ENST00000336378 4669 ntAPPRIS ALT2 TSL 5 BASIC12.68□□□□□ -0.38
SUMO3P55854 C12orf76-201ENST00000309050 1964 ntTSL 2 BASIC12.68□□□□□ -0.38
SUMO3P55854 THEMIS2-201ENST00000328928 2337 ntTSL 2 BASIC12.68□□□□□ -0.38
SUMO3P55854 SPDYA-202ENST00000379579 1759 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
SUMO3P55854 TSEN2-202ENST00000402228 2149 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
SUMO3P55854 AC135782.3-201ENST00000562782 2105 ntBASIC12.68□□□□□ -0.38
SUMO3P55854 DHX36-213ENST00000496811 6733 ntAPPRIS P3 TSL 1 (best) BASIC12.68□□□□□ -0.38
SUMO3P55854 UBTF-205ENST00000526094 2459 ntTSL 5 BASIC12.68□□□□□ -0.38
SUMO3P55854 AC004890.2-205ENST00000416232 2804 ntTSL 2 BASIC12.68□□□□□ -0.38
SUMO3P55854 CYLD-202ENST00000398568 3536 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
SUMO3P55854 ACTN4-203ENST00000424234 1566 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
SUMO3P55854 WNT2B-202ENST00000369684 3818 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
SUMO3P55854 PIGG-202ENST00000383028 2787 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
SUMO3P55854 PADI2-202ENST00000375486 4345 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
SUMO3P55854 PPP1R11-205ENST00000376772 1731 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
SUMO3P55854 PES1P2-201ENST00000449745 1735 ntBASIC12.68□□□□□ -0.38
SUMO3P55854 COL6A2-202ENST00000310645 3446 ntTSL 5 BASIC12.68□□□□□ -0.38
SUMO3P55854 API5-208ENST00000531273 1868 ntTSL 2 BASIC12.68□□□□□ -0.38
SUMO3P55854 PDPR-202ENST00000398122 2734 ntTSL 2 BASIC12.68□□□□□ -0.38
SUMO3P55854 S1PR2-201ENST00000590320 3582 ntAPPRIS P1 TSL 3 BASIC12.68□□□□□ -0.38
SUMO3P55854 HSPA6-201ENST00000309758 2371 ntAPPRIS P1 BASIC12.67□□□□□ -0.38
SUMO3P55854 ASS1-203ENST00000372393 1548 ntAPPRIS P1 TSL 5 BASIC12.67□□□□□ -0.38
SUMO3P55854 HLA-DQB1-202ENST00000399079 1501 ntBASIC12.67□□□□□ -0.38
SUMO3P55854 TTLL4-212ENST00000457313 3723 ntTSL 2 BASIC12.67□□□□□ -0.38
SUMO3P55854 ADAM15-204ENST00000359280 2874 ntAPPRIS ALT2 TSL 1 (best) BASIC12.67□□□□□ -0.38
SUMO3P55854 KLHL32-206ENST00000544166 2864 ntTSL 2 BASIC12.67□□□□□ -0.38
SUMO3P55854 AC131212.3-201ENST00000624087 4219 ntBASIC12.67□□□□□ -0.38
SUMO3P55854 MALSU1-202ENST00000466681 3044 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
SUMO3P55854 RAMP3-201ENST00000242249 1323 ntAPPRIS P2 TSL 1 (best) BASIC12.67□□□□□ -0.38
SUMO3P55854 BRSK1-206ENST00000590333 2977 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
SUMO3P55854 GGT5-202ENST00000327365 2494 ntAPPRIS P3 TSL 1 (best) BASIC12.67□□□□□ -0.38
SUMO3P55854 TNS2-202ENST00000314276 4944 ntAPPRIS P4 TSL 1 (best) BASIC12.67□□□□□ -0.38
SUMO3P55854 RBP1-205ENST00000492918 1487 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
SUMO3P55854 WNT7B-201ENST00000339464 3919 ntAPPRIS P2 TSL 1 (best) BASIC12.67□□□□□ -0.38
SUMO3P55854 LRIG3-201ENST00000320743 4070 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
SUMO3P55854 RBM4B-206ENST00000531036 1646 ntTSL 2 BASIC12.67□□□□□ -0.38
SUMO3P55854 POM121-201ENST00000358357 5320 ntAPPRIS P3 TSL 1 (best) BASIC12.67□□□□□ -0.38
SUMO3P55854 HADH-202ENST00000403312 1752 ntTSL 5 BASIC12.67□□□□□ -0.38
SUMO3P55854 OSBPL3-201ENST00000313367 6760 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
SUMO3P55854 MED15-204ENST00000406969 3210 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
Retrieved 100 of 98,524 protein–RNA pairs in 34.3 ms