Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 AL139260.2-201ENST00000622355 2171 ntTSL 2 BASIC11.61□□□□□ -0.55
CDX1P47902 HPS3-201ENST00000296051 4665 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
CDX1P47902 CLOCK-211ENST00000513440 3580 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
CDX1P47902 ZNF202-207ENST00000530393 3564 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
CDX1P47902 TMEM130-201ENST00000339375 3015 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
CDX1P47902 CCND3-215ENST00000511642 2394 ntTSL 2 BASIC11.61□□□□□ -0.55
CDX1P47902 LDLRAD4-203ENST00000399848 8633 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
CDX1P47902 ELN-222ENST00000458204 3147 ntAPPRIS ALT2 TSL 1 (best) BASIC11.61□□□□□ -0.55
CDX1P47902 ITPR3-202ENST00000605930 9029 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
CDX1P47902 HDHD3-201ENST00000238379 1834 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
CDX1P47902 ANKRD35-201ENST00000355594 3342 ntAPPRIS P1 TSL 2 BASIC11.61□□□□□ -0.55
CDX1P47902 HARS-207ENST00000504156 3334 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
CDX1P47902 CCT7-201ENST00000258091 1916 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
CDX1P47902 DDC-207ENST00000444124 2041 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
CDX1P47902 CIPC-201ENST00000361786 4486 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
CDX1P47902 CYP4F11-202ENST00000326742 2877 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
CDX1P47902 RPS3-201ENST00000278572 907 ntTSL 3 BASIC11.61□□□□□ -0.55
CDX1P47902 HIST3H3-201ENST00000366696 481 ntAPPRIS P1 BASIC11.61□□□□□ -0.55
CDX1P47902 UROS-203ENST00000368786 1216 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
CDX1P47902 MOGAT3-202ENST00000379423 933 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
CDX1P47902 PEX13-202ENST00000401576 1108 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
CDX1P47902 LINC01694-201ENST00000424569 821 ntTSL 5 BASIC11.61□□□□□ -0.55
CDX1P47902 AL139289.2-201ENST00000424948 661 ntTSL 2 BASIC11.61□□□□□ -0.55
CDX1P47902 AC007969.1-201ENST00000433675 447 ntBASIC11.61□□□□□ -0.55
CDX1P47902 CHMP1AP1-201ENST00000445563 662 ntBASIC11.61□□□□□ -0.55
CDX1P47902 MAATS1-203ENST00000463700 939 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
CDX1P47902 APOA2-204ENST00000464492 530 ntTSL 3 BASIC11.61□□□□□ -0.55
CDX1P47902 AC099548.2-204ENST00000481651 2106 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
CDX1P47902 RPSAP36-202ENST00000494591 1261 ntBASIC11.61□□□□□ -0.55
CDX1P47902 AC108725.1-201ENST00000495472 409 ntBASIC11.61□□□□□ -0.55
CDX1P47902 AC008808.1-201ENST00000508923 432 ntTSL 3 BASIC11.61□□□□□ -0.55
CDX1P47902 GNLY-210ENST00000524600 750 ntAPPRIS ALT2 TSL 2 BASIC11.61□□□□□ -0.55
CDX1P47902 NDUFC1-210ENST00000539387 725 ntAPPRIS P1 TSL 2 BASIC11.61□□□□□ -0.55
CDX1P47902 IGHV3OR16-9-202ENST00000558425 288 ntAPPRIS ALT2 BASIC11.61□□□□□ -0.55
CDX1P47902 AC123786.1-201ENST00000581626 661 ntTSL 3 BASIC11.61□□□□□ -0.55
CDX1P47902 AC011447.3-204ENST00000585498 883 ntTSL 2 BASIC11.61□□□□□ -0.55
CDX1P47902 AC138696.2-201ENST00000607376 223 ntBASIC11.61□□□□□ -0.55
CDX1P47902 AL358473.2-201ENST00000610411 556 ntTSL 4 BASIC11.61□□□□□ -0.55
CDX1P47902 SMIM22-211ENST00000615889 1047 ntAPPRIS P4 TSL 5 BASIC11.61□□□□□ -0.55
CDX1P47902 FP565260.5-201ENST00000623188 479 ntTSL 3 BASIC11.61□□□□□ -0.55
CDX1P47902 SCP2-217ENST00000640998 1101 ntTSL 5 BASIC11.61□□□□□ -0.55
CDX1P47902 CALCOCO2-211ENST00000508679 1396 ntTSL 2 BASIC11.61□□□□□ -0.55
CDX1P47902 KRT8P4-201ENST00000509735 1454 ntBASIC11.61□□□□□ -0.55
CDX1P47902 RMND1-205ENST00000622845 1484 ntTSL 5 BASIC11.61□□□□□ -0.55
CDX1P47902 PNPLA6-201ENST00000221249 4617 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
CDX1P47902 VAMP7-202ENST00000286448 2646 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
CDX1P47902 VAPA-202ENST00000400000 6815 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
CDX1P47902 SLC38A7-201ENST00000219320 4392 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
CDX1P47902 PPP2R1B-204ENST00000426998 1888 ntAPPRIS ALT2 TSL 2 BASIC11.61□□□□□ -0.55
CDX1P47902 CCT3-211ENST00000472765 1858 ntTSL 2 BASIC11.61□□□□□ -0.55
CDX1P47902 GOLGA8M-201ENST00000563027 1899 ntAPPRIS P1 TSL 5 BASIC11.61□□□□□ -0.55
CDX1P47902 TMEM57-201ENST00000374343 3917 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
CDX1P47902 AC111170.3-201ENST00000624282 2464 ntBASIC11.61□□□□□ -0.55
CDX1P47902 MAOB-201ENST00000378069 2566 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
CDX1P47902 VILL-201ENST00000283713 2970 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
CDX1P47902 TBC1D2-204ENST00000375066 3198 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
CDX1P47902 POU2AF1-201ENST00000393067 3295 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
CDX1P47902 AC022400.8-201ENST00000623453 3599 ntBASIC11.61□□□□□ -0.55
CDX1P47902 PIP4K2A-201ENST00000323883 1319 ntTSL 2 BASIC11.6□□□□□ -0.55
CDX1P47902 LINC01667-202ENST00000623919 1422 ntTSL 5 BASIC11.6□□□□□ -0.55
CDX1P47902 UGGT2-204ENST00000397618 1547 ntTSL 1 (best) BASIC11.6□□□□□ -0.55
CDX1P47902 HMBOX1-210ENST00000523613 1730 ntTSL 1 (best) BASIC11.6□□□□□ -0.55
CDX1P47902 MLLT3-210ENST00000630269 2040 ntAPPRIS ALT1 TSL 2 BASIC11.6□□□□□ -0.55
CDX1P47902 SIGLEC12-201ENST00000291707 2121 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
CDX1P47902 POC5-202ENST00000428202 2229 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
CDX1P47902 MYO16-203ENST00000357550 6779 ntAPPRIS P3 TSL 1 (best) BASIC11.6□□□□□ -0.55
CDX1P47902 C1S-202ENST00000360817 2635 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
CDX1P47902 CMPK1-203ENST00000371873 2930 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
CDX1P47902 RBM15-205ENST00000618772 3431 ntTSL 1 (best) BASIC11.6□□□□□ -0.55
CDX1P47902 SUN2-201ENST00000405018 4022 ntTSL 1 (best) BASIC11.6□□□□□ -0.55
CDX1P47902 USO1-201ENST00000264904 4135 ntTSL 2 BASIC11.6□□□□□ -0.55
CDX1P47902 CPLX2-201ENST00000359546 5023 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
CDX1P47902 MNT-201ENST00000174618 4996 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
CDX1P47902 RANBP17-219ENST00000523189 4588 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
CDX1P47902 SCAF4-201ENST00000286835 4193 ntAPPRIS P3 TSL 1 (best) BASIC11.6□□□□□ -0.55
CDX1P47902 KCNJ9-201ENST00000368088 4170 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
CDX1P47902 PLXNB1-201ENST00000296440 7143 ntAPPRIS P2 TSL 1 (best) BASIC11.6□□□□□ -0.55
CDX1P47902 THBS2-201ENST00000366787 5811 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
CDX1P47902 DUOXA1-205ENST00000558422 1678 ntTSL 1 (best) BASIC11.6□□□□□ -0.55
CDX1P47902 PCDHGB3-201ENST00000576222 4727 ntTSL 1 (best) BASIC11.6□□□□□ -0.55
CDX1P47902 FGFR1OP-201ENST00000349556 1484 ntAPPRIS ALT2 TSL 1 (best) BASIC11.6□□□□□ -0.55
CDX1P47902 FIS1-201ENST00000223136 734 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
CDX1P47902 CRABP1-201ENST00000299529 772 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
CDX1P47902 IFNL2-201ENST00000331982 737 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
CDX1P47902 NCR3-201ENST00000340027 1042 ntAPPRIS P3 TSL 1 (best) BASIC11.6□□□□□ -0.55
CDX1P47902 RAB4B-201ENST00000357052 1133 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
CDX1P47902 AC011450.1-202ENST00000358234 573 ntTSL 4 BASIC11.6□□□□□ -0.55
CDX1P47902 NCR3-204ENST00000376073 1097 ntAPPRIS ALT2 TSL 1 (best) BASIC11.6□□□□□ -0.55
CDX1P47902 PPP1R14B-202ENST00000392210 600 ntTSL 3 BASIC11.6□□□□□ -0.55
CDX1P47902 RN7SKP175-201ENST00000408472 289 ntBASIC11.6□□□□□ -0.55
CDX1P47902 NREP-204ENST00000419114 704 ntAPPRIS P1 TSL 2 BASIC11.6□□□□□ -0.55
CDX1P47902 IQCF3-203ENST00000444293 450 ntTSL 1 (best) BASIC11.6□□□□□ -0.55
CDX1P47902 RPL35A-205ENST00000448864 549 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
CDX1P47902 AL591846.1-201ENST00000451736 433 ntBASIC11.6□□□□□ -0.55
CDX1P47902 FAM25G-201ENST00000452267 345 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
CDX1P47902 PGAP2-209ENST00000464261 830 ntTSL 3 BASIC11.6□□□□□ -0.55
CDX1P47902 ATP6V0CP2-201ENST00000469409 207 ntBASIC11.6□□□□□ -0.55
CDX1P47902 ROPN1B-210ENST00000514116 1088 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
CDX1P47902 GTF2H2C-215ENST00000514162 610 ntTSL 5 BASIC11.6□□□□□ -0.55
CDX1P47902 AC006487.1-201ENST00000514506 1221 ntTSL 2 BASIC11.6□□□□□ -0.55
Retrieved 100 of 98,524 protein–RNA pairs in 86.7 ms