Protein–RNA interactions for Protein: P40938

RFC3, Replication factor C subunit 3, humanhuman

Predictions only

Length 356 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFC3P40938 EDC3-201ENST00000315127 3763 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
RFC3P40938 SMTN-201ENST00000333137 3295 ntAPPRIS ALT2 TSL 1 (best) BASIC12.95□□□□□ -0.34
RFC3P40938 GPD1-205ENST00000548814 1591 ntTSL 2 BASIC12.95□□□□□ -0.34
RFC3P40938 SHCBP1-201ENST00000303383 3461 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
RFC3P40938 RNPS1-216ENST00000565678 2298 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
RFC3P40938 GABPB1-201ENST00000220429 2726 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
RFC3P40938 TACC3-212ENST00000612220 1756 ntTSL 5 BASIC12.95□□□□□ -0.34
RFC3P40938 CTCFL-205ENST00000423479 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC12.95□□□□□ -0.34
RFC3P40938 UBTF-205ENST00000526094 2459 ntTSL 5 BASIC12.95□□□□□ -0.34
RFC3P40938 CSF3-201ENST00000225474 1509 ntAPPRIS P3 TSL 1 (best) BASIC12.95□□□□□ -0.34
RFC3P40938 MAP2K6-205ENST00000589647 1512 ntTSL 5 BASIC12.95□□□□□ -0.34
RFC3P40938 ADAM33-206ENST00000617732 1971 ntTSL 5 BASIC12.95□□□□□ -0.34
RFC3P40938 FERD3L-201ENST00000275461 640 ntAPPRIS P1 BASIC12.95□□□□□ -0.34
RFC3P40938 MUC1-203ENST00000342482 537 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
RFC3P40938 TNNT2-202ENST00000360372 969 ntTSL 5 BASIC12.95□□□□□ -0.34
RFC3P40938 TNNT2-204ENST00000367317 1050 ntAPPRIS ALT2 TSL 5 BASIC12.95□□□□□ -0.34
RFC3P40938 TNNT2-209ENST00000421663 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC12.95□□□□□ -0.34
RFC3P40938 AC013448.2-201ENST00000440341 787 ntTSL 5 BASIC12.95□□□□□ -0.34
RFC3P40938 AC253536.4-201ENST00000440539 267 ntBASIC12.95□□□□□ -0.34
RFC3P40938 AC011247.2-201ENST00000457097 233 ntTSL 4 BASIC12.95□□□□□ -0.34
RFC3P40938 RPL18AP8-201ENST00000486071 528 ntBASIC12.95□□□□□ -0.34
RFC3P40938 AC112487.1-201ENST00000498032 1097 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
RFC3P40938 ORAOV1P1-201ENST00000503108 395 ntBASIC12.95□□□□□ -0.34
RFC3P40938 AC136601.1-201ENST00000521803 666 ntTSL 3 BASIC12.95□□□□□ -0.34
RFC3P40938 ALG1L13P-204ENST00000523017 765 ntTSL 5 BASIC12.95□□□□□ -0.34
RFC3P40938 PLEKHA8P1-203ENST00000545609 277 ntTSL 3 BASIC12.95□□□□□ -0.34
RFC3P40938 LINC01154-201ENST00000548617 454 ntTSL 3 BASIC12.95□□□□□ -0.34
RFC3P40938 AC138701.2-201ENST00000553634 226 ntBASIC12.95□□□□□ -0.34
RFC3P40938 RPL19-207ENST00000582193 792 ntAPPRIS ALT1 TSL 5 BASIC12.95□□□□□ -0.34
RFC3P40938 BCL2L12-204ENST00000594157 620 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
RFC3P40938 ZNF530-203ENST00000597864 634 ntTSL 2 BASIC12.95□□□□□ -0.34
RFC3P40938 AC242426.4-201ENST00000606856 573 ntTSL 5 BASIC12.95□□□□□ -0.34
RFC3P40938 AL021707.6-201ENST00000609212 491 ntBASIC12.95□□□□□ -0.34
RFC3P40938 MIR6074-201ENST00000612054 107 ntBASIC12.95□□□□□ -0.34
RFC3P40938 HIST1H3C-201ENST00000612966 411 ntAPPRIS P1 BASIC12.95□□□□□ -0.34
RFC3P40938 AC005618.3-201ENST00000624928 458 ntBASIC12.95□□□□□ -0.34
RFC3P40938 PSMD5-208ENST00000625444 219 ntTSL 5 BASIC12.95□□□□□ -0.34
RFC3P40938 PPP1R13L-202ENST00000418234 3118 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
RFC3P40938 WWC2-201ENST00000403733 8826 ntAPPRIS P1 TSL 5 BASIC12.95□□□□□ -0.34
RFC3P40938 CDKL3-206ENST00000521118 2160 ntAPPRIS ALT2 TSL 5 BASIC12.95□□□□□ -0.34
RFC3P40938 RPS6KC1-207ENST00000543470 4227 ntTSL 2 BASIC12.95□□□□□ -0.34
RFC3P40938 GPT2-201ENST00000340124 3984 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
RFC3P40938 MANEAL-201ENST00000329006 1930 ntTSL 2 BASIC12.95□□□□□ -0.34
RFC3P40938 NBAT1-201ENST00000566912 1940 ntTSL 2 BASIC12.95□□□□□ -0.34
RFC3P40938 TBC1D8B-203ENST00000357242 5717 ntAPPRIS P2 TSL 1 (best) BASIC12.95□□□□□ -0.34
RFC3P40938 METTL13-202ENST00000362019 3022 ntTSL 2 BASIC12.95□□□□□ -0.34
RFC3P40938 PAK3-208ENST00000446737 2550 ntAPPRIS P3 TSL 1 (best) BASIC12.95□□□□□ -0.34
RFC3P40938 CACNA2D4-220ENST00000585732 2566 ntTSL 5 BASIC12.95□□□□□ -0.34
RFC3P40938 BCKDHA-201ENST00000269980 2103 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
RFC3P40938 KIAA1161-201ENST00000297625 6398 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
RFC3P40938 DLGAP1-204ENST00000400149 5203 ntTSL 5 BASIC12.95□□□□□ -0.34
RFC3P40938 MYLIP-201ENST00000349606 2796 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
RFC3P40938 SLC6A9-207ENST00000475075 1881 ntTSL 2 BASIC12.95□□□□□ -0.34
RFC3P40938 ATF4-202ENST00000396680 1419 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
RFC3P40938 SLC4A1-206ENST00000631130 1433 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
RFC3P40938 FRZB-201ENST00000295113 3162 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
RFC3P40938 ARHGAP4-203ENST00000370028 3372 ntAPPRIS ALT2 TSL 1 (best) BASIC12.95□□□□□ -0.34
RFC3P40938 RNF14-201ENST00000347642 4213 ntAPPRIS P1 TSL 2 BASIC12.95□□□□□ -0.34
RFC3P40938 SPOCD1-201ENST00000257100 2472 ntAPPRIS ALT2 TSL 2 BASIC12.95□□□□□ -0.34
RFC3P40938 AC009690.1-201ENST00000379915 4374 ntAPPRIS P1 TSL 2 BASIC12.95□□□□□ -0.34
RFC3P40938 HDAC2-206ENST00000519108 2000 ntTSL 2 BASIC12.95□□□□□ -0.34
RFC3P40938 AL022313.4-201ENST00000562756 2046 ntBASIC12.95□□□□□ -0.34
RFC3P40938 RARG-202ENST00000394426 2640 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
RFC3P40938 DLX3-201ENST00000434704 2602 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
RFC3P40938 CNOT10-201ENST00000328834 2815 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
RFC3P40938 TTC39A-216ENST00000530004 1780 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
RFC3P40938 KCTD18-202ENST00000409157 2556 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
RFC3P40938 DCHS1-201ENST00000299441 10765 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
RFC3P40938 BBS2-201ENST00000245157 2963 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
RFC3P40938 AC093668.2-201ENST00000481893 3569 ntTSL 2 BASIC12.94□□□□□ -0.34
RFC3P40938 AC105052.1-201ENST00000519541 3569 ntAPPRIS P1 TSL 2 BASIC12.94□□□□□ -0.34
RFC3P40938 ARV1-201ENST00000310256 1335 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
RFC3P40938 CES1P1-201ENST00000421606 1704 ntBASIC12.94□□□□□ -0.34
RFC3P40938 DNAAF5-202ENST00000403952 1907 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
RFC3P40938 NLRX1-201ENST00000292199 3744 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
RFC3P40938 RIMS1-214ENST00000518273 4116 ntTSL 5 BASIC12.94□□□□□ -0.34
RFC3P40938 PSME4-202ENST00000404125 7099 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
RFC3P40938 MYO16-202ENST00000356711 6874 ntAPPRIS P3 TSL 1 (best) BASIC12.94□□□□□ -0.34
RFC3P40938 APLP2-203ENST00000338167 3270 ntAPPRIS ALT2 TSL 1 (best) BASIC12.94□□□□□ -0.34
RFC3P40938 WARS-203ENST00000358655 2466 ntTSL 2 BASIC12.94□□□□□ -0.34
RFC3P40938 CDYL2-203ENST00000562812 2086 ntAPPRIS ALT2 TSL 5 BASIC12.94□□□□□ -0.34
RFC3P40938 CDYL2-204ENST00000563890 2086 ntAPPRIS ALT2 TSL 5 BASIC12.94□□□□□ -0.34
RFC3P40938 CDYL2-205ENST00000566173 2086 ntAPPRIS ALT2 TSL 5 BASIC12.94□□□□□ -0.34
RFC3P40938 RBPJ-206ENST00000361572 1697 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
RFC3P40938 LRP5L-202ENST00000402859 1661 ntAPPRIS P2 TSL 5 BASIC12.94□□□□□ -0.34
RFC3P40938 ZNF576-202ENST00000391965 1468 ntAPPRIS P1 TSL 2 BASIC12.94□□□□□ -0.34
RFC3P40938 VAMP2-202ENST00000404970 1479 ntTSL 2 BASIC12.94□□□□□ -0.34
RFC3P40938 AKR1C2-202ENST00000421196 1481 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
RFC3P40938 VPS29-201ENST00000360579 1091 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
RFC3P40938 FAM3B-203ENST00000398647 864 ntAPPRIS ALT2 TSL 1 (best) BASIC12.94□□□□□ -0.34
RFC3P40938 FAM3B-204ENST00000398652 1125 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
RFC3P40938 PIK3IP1-202ENST00000402249 999 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
RFC3P40938 AC005392.1-201ENST00000419624 500 ntTSL 5 BASIC12.94□□□□□ -0.34
RFC3P40938 RLN3-201ENST00000431365 580 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
RFC3P40938 RPL7P35-201ENST00000446943 740 ntBASIC12.94□□□□□ -0.34
RFC3P40938 TIMP1-205ENST00000456754 1095 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
RFC3P40938 AC108462.1-201ENST00000457467 850 ntTSL 3 BASIC12.94□□□□□ -0.34
RFC3P40938 RPL18AP3-201ENST00000462885 528 ntBASIC12.94□□□□□ -0.34
RFC3P40938 RPP40-203ENST00000464646 1042 ntTSL 5 BASIC12.94□□□□□ -0.34
RFC3P40938 RN7SL81P-201ENST00000493781 261 ntBASIC12.94□□□□□ -0.34
Retrieved 100 of 98,524 protein–RNA pairs in 47.2 ms