Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 FKBP1B-205ENST00000452109 953 ntTSL 3 BASIC14.37□□□□□ -0.11
HMGA1P17096 AC063952.3-201ENST00000467756 308 ntBASIC14.37□□□□□ -0.11
HMGA1P17096 MUSTN1-202ENST00000486659 622 ntTSL 2 BASIC14.37□□□□□ -0.11
HMGA1P17096 AC106047.2-201ENST00000511723 743 ntBASIC14.37□□□□□ -0.11
HMGA1P17096 PRB3-202ENST00000538488 1283 ntAPPRIS P5 TSL 5 BASIC14.37□□□□□ -0.11
HMGA1P17096 AC092862.1-201ENST00000541534 533 ntBASIC14.37□□□□□ -0.11
HMGA1P17096 MYL6-218ENST00000550697 901 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
HMGA1P17096 RNASEK-204ENST00000552039 591 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
HMGA1P17096 AC134312.2-201ENST00000563521 608 ntTSL 2 BASIC14.37□□□□□ -0.11
HMGA1P17096 HIST2H4A-201ENST00000578186 583 ntAPPRIS P1 BASIC14.37□□□□□ -0.11
HMGA1P17096 C19orf70-203ENST00000587589 577 ntTSL 5 BASIC14.37□□□□□ -0.11
HMGA1P17096 ZNF586-204ENST00000598183 603 ntTSL 5 BASIC14.37□□□□□ -0.11
HMGA1P17096 AL160191.2-201ENST00000603975 601 ntBASIC14.37□□□□□ -0.11
HMGA1P17096 OSMR-AS1-204ENST00000636516 850 ntTSL 5 BASIC14.37□□□□□ -0.11
HMGA1P17096 MAST1-201ENST00000251472 4833 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
HMGA1P17096 ZBTB7B-202ENST00000368426 3594 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
HMGA1P17096 DRD3-203ENST00000460779 1557 ntAPPRIS P3 TSL 2 BASIC14.37□□□□□ -0.11
HMGA1P17096 TIFA-201ENST00000361717 4157 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
HMGA1P17096 CCT3-201ENST00000295688 2150 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
HMGA1P17096 OSBPL5-203ENST00000389989 3619 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
HMGA1P17096 TMEM254-213ENST00000613758 2154 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
HMGA1P17096 DAXX-201ENST00000266000 2606 ntAPPRIS P2 TSL 1 (best) BASIC14.37□□□□□ -0.11
HMGA1P17096 BRF1-211ENST00000547530 3358 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
HMGA1P17096 AL139423.1-201ENST00000606802 7923 ntTSL 5 BASIC14.37□□□□□ -0.11
HMGA1P17096 DHRS7-209ENST00000557185 1322 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
HMGA1P17096 C7orf49-214ENST00000620897 1349 ntTSL 3 BASIC14.37□□□□□ -0.11
HMGA1P17096 FAM213A-203ENST00000372187 1647 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
HMGA1P17096 DRD3-202ENST00000383673 1640 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
HMGA1P17096 NKX2-1-AS1-201ENST00000521292 1775 ntTSL 2 BASIC14.37□□□□□ -0.11
HMGA1P17096 ERCC4-207ENST00000575156 2073 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
HMGA1P17096 ATP6V0A1-206ENST00000585525 2679 ntTSL 2 BASIC14.37□□□□□ -0.11
HMGA1P17096 TRIM46-210ENST00000545012 2979 ntTSL 2 BASIC14.37□□□□□ -0.11
HMGA1P17096 MCM3AP-AS1-203ENST00000421927 2280 ntTSL 2 BASIC14.36□□□□□ -0.11
HMGA1P17096 TDP2-201ENST00000341060 2120 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
HMGA1P17096 FABP1-202ENST00000393750 1839 ntTSL 2 BASIC14.36□□□□□ -0.11
HMGA1P17096 SALL3-201ENST00000536229 3997 ntTSL 3 BASIC14.36□□□□□ -0.11
HMGA1P17096 TCAIM-201ENST00000342649 3687 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
HMGA1P17096 CLASRP-204ENST00000544944 2769 ntAPPRIS ALT2 TSL 2 BASIC14.36□□□□□ -0.11
HMGA1P17096 WIZ-207ENST00000599910 4609 ntAPPRIS ALT2 TSL 5 BASIC14.36□□□□□ -0.11
HMGA1P17096 PRAME-205ENST00000405655 2179 ntAPPRIS P2 TSL 1 (best) BASIC14.36□□□□□ -0.11
HMGA1P17096 HDAC11-201ENST00000295757 2960 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
HMGA1P17096 LINC01184-204ENST00000501702 2977 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
HMGA1P17096 MGEA5-203ENST00000370094 3314 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
HMGA1P17096 USP25-201ENST00000285679 3973 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
HMGA1P17096 MIR566-201ENST00000385187 94 ntBASIC14.36□□□□□ -0.11
HMGA1P17096 IGLJ3-201ENST00000390324 176 ntAPPRIS P1 BASIC14.36□□□□□ -0.11
HMGA1P17096 SNU13-204ENST00000402458 462 ntTSL 3 BASIC14.36□□□□□ -0.11
HMGA1P17096 SNORA50C-201ENST00000408535 133 ntBASIC14.36□□□□□ -0.11
HMGA1P17096 AL139008.1-201ENST00000437894 228 ntBASIC14.36□□□□□ -0.11
HMGA1P17096 FAM138B-202ENST00000446648 1130 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
HMGA1P17096 FAM138C-202ENST00000449442 1126 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
HMGA1P17096 UBR5-AS1-202ENST00000520820 800 ntTSL 2 BASIC14.36□□□□□ -0.11
HMGA1P17096 F11R-204ENST00000537746 1245 ntTSL 2 BASIC14.36□□□□□ -0.11
HMGA1P17096 HNRNPA1P5-201ENST00000558213 966 ntBASIC14.36□□□□□ -0.11
HMGA1P17096 AC012174.1-201ENST00000562349 714 ntTSL 3 BASIC14.36□□□□□ -0.11
HMGA1P17096 AC132812.1-201ENST00000583145 892 ntBASIC14.36□□□□□ -0.11
HMGA1P17096 AC095350.1-204ENST00000585405 616 ntTSL 5 BASIC14.36□□□□□ -0.11
HMGA1P17096 ZFP36-201ENST00000594045 690 ntTSL 3 BASIC14.36□□□□□ -0.11
HMGA1P17096 AL356740.1-201ENST00000602192 1297 ntBASIC14.36□□□□□ -0.11
HMGA1P17096 CSTP2-201ENST00000610599 398 ntBASIC14.36□□□□□ -0.11
HMGA1P17096 HMGB1P24-201ENST00000611897 328 ntBASIC14.36□□□□□ -0.11
HMGA1P17096 Metazoa_SRP.200-201ENST00000622073 282 ntBASIC14.36□□□□□ -0.11
HMGA1P17096 AC005274.1-201ENST00000623460 802 ntBASIC14.36□□□□□ -0.11
HMGA1P17096 SNORA50.1-201ENST00000628590 135 ntBASIC14.36□□□□□ -0.11
HMGA1P17096 FAM138F-201ENST00000631376 1183 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
HMGA1P17096 AP000769.1-203ENST00000637245 208 ntBASIC14.36□□□□□ -0.11
HMGA1P17096 ESR1-214ENST00000638569 132 ntTSL 5 BASIC14.36□□□□□ -0.11
HMGA1P17096 LINC00637-201ENST00000556586 2056 ntTSL 2 BASIC14.36□□□□□ -0.11
HMGA1P17096 VRK3-201ENST00000316763 1938 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
HMGA1P17096 TNN-203ENST00000622870 3719 ntTSL 5 BASIC14.36□□□□□ -0.11
HMGA1P17096 PGLYRP4-202ENST00000368739 2116 ntAPPRIS ALT1 TSL 5 BASIC14.36□□□□□ -0.11
HMGA1P17096 PSEN2-202ENST00000366783 2306 ntAPPRIS P3 TSL 5 BASIC14.36□□□□□ -0.11
HMGA1P17096 TRIM24-201ENST00000343526 8410 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
HMGA1P17096 NOP58-201ENST00000264279 2046 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
HMGA1P17096 TJP3-202ENST00000541714 3350 ntAPPRIS P3 TSL 2 BASIC14.36□□□□□ -0.11
HMGA1P17096 KIAA2026-202ENST00000399933 6988 ntAPPRIS P1 TSL 5 BASIC14.35□□□□□ -0.11
HMGA1P17096 ARMCX3-203ENST00000471229 2051 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
HMGA1P17096 GNAI2-203ENST00000422163 2407 ntTSL 2 BASIC14.35□□□□□ -0.11
HMGA1P17096 CDKN2AIP-201ENST00000302350 2646 ntTSL 2 BASIC14.35□□□□□ -0.11
HMGA1P17096 GP6-201ENST00000310373 2268 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.11
HMGA1P17096 CCDC138-203ENST00000412964 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
HMGA1P17096 PALLD-215ENST00000512127 2958 ntTSL 2 BASIC14.35□□□□□ -0.11
HMGA1P17096 ARHGEF1-201ENST00000337665 3171 ntAPPRIS P4 TSL 1 (best) BASIC14.35□□□□□ -0.11
HMGA1P17096 MIB1-201ENST00000261537 9576 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
HMGA1P17096 XRRA1-202ENST00000340360 5681 ntAPPRIS P1 TSL 5 BASIC14.35□□□□□ -0.11
HMGA1P17096 KAT7-204ENST00000454930 1774 ntTSL 2 BASIC14.35□□□□□ -0.11
HMGA1P17096 ATP5A1-215ENST00000590665 1793 ntTSL 2 BASIC14.35□□□□□ -0.11
HMGA1P17096 GAS2L1-209ENST00000618518 3382 ntAPPRIS P1 TSL 2 BASIC14.35□□□□□ -0.11
HMGA1P17096 ECI2-202ENST00000380118 1407 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
HMGA1P17096 TDRD12-202ENST00000444215 3934 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
HMGA1P17096 EVPL-201ENST00000301607 6614 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
HMGA1P17096 ARHGAP4-201ENST00000350060 3235 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.11
HMGA1P17096 ANKRD13B-201ENST00000394859 3214 ntAPPRIS P1 TSL 2 BASIC14.35□□□□□ -0.11
HMGA1P17096 AC117489.1-201ENST00000625169 3217 ntBASIC14.35□□□□□ -0.11
HMGA1P17096 ARL5B-201ENST00000377275 7196 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
HMGA1P17096 AL139082.1-201ENST00000613982 3433 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
HMGA1P17096 MDM1-205ENST00000430606 2170 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
HMGA1P17096 MRPL33-201ENST00000296102 518 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
HMGA1P17096 NDUFB6-202ENST00000366466 761 ntTSL 2 BASIC14.35□□□□□ -0.11
HMGA1P17096 MRPL33-202ENST00000379666 404 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 60.5 ms