Protein–RNA interactions for Protein: P09341

CXCL1, Growth-regulated alpha protein, humanhuman

Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1P09341 BX539320.1-201ENST00000623759 877 ntBASIC10.93□□□□□ -0.66
CXCL1P09341 MCCC2-209ENST00000629193 1128 ntTSL 1 (best) BASIC10.93□□□□□ -0.66
CXCL1P09341 PPP2R1A-205ENST00000462990 2730 ntTSL 2 BASIC10.93□□□□□ -0.66
CXCL1P09341 SRPRA-201ENST00000332118 3069 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
CXCL1P09341 PPP6R2-209ENST00000612753 4104 ntAPPRIS ALT2 TSL 2 BASIC10.93□□□□□ -0.66
CXCL1P09341 HECTD1-203ENST00000553700 9080 ntAPPRIS P1 TSL 5 BASIC10.93□□□□□ -0.66
CXCL1P09341 AL845472.1-202ENST00000624675 4080 ntBASIC10.93□□□□□ -0.66
CXCL1P09341 MYO9B-204ENST00000594824 7595 ntAPPRIS P1 TSL 5 BASIC10.93□□□□□ -0.66
CXCL1P09341 SLC27A6-203ENST00000506176 2294 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
CXCL1P09341 TBC1D26-206ENST00000579428 1583 ntTSL 2 BASIC10.93□□□□□ -0.66
CXCL1P09341 MCM2-201ENST00000265056 3622 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
CXCL1P09341 LINC00908-202ENST00000578613 2242 ntTSL 2 BASIC10.93□□□□□ -0.66
CXCL1P09341 AC006037.2-201ENST00000622975 2232 ntBASIC10.93□□□□□ -0.66
CXCL1P09341 ADM2-202ENST00000395738 4276 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
CXCL1P09341 GPR12-202ENST00000405846 4850 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
CXCL1P09341 USP11-204ENST00000377107 3515 ntAPPRIS ALT2 TSL 1 (best) BASIC10.93□□□□□ -0.66
CXCL1P09341 AP001046.1-201ENST00000435702 2816 ntTSL 2 BASIC10.93□□□□□ -0.66
CXCL1P09341 RPS24-204ENST00000440692 2814 ntTSL 3 BASIC10.93□□□□□ -0.66
CXCL1P09341 PLA2G4E-AS1-201ENST00000499478 2499 ntTSL 1 (best) BASIC10.93□□□□□ -0.66
CXCL1P09341 BTBD7P1-201ENST00000447253 1453 ntBASIC10.93□□□□□ -0.66
CXCL1P09341 PSMD11-201ENST00000261712 4098 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
CXCL1P09341 POM121L7P-201ENST00000329949 2404 ntBASIC10.93□□□□□ -0.66
CXCL1P09341 SALL4P5-201ENST00000419001 1760 ntBASIC10.93□□□□□ -0.66
CXCL1P09341 GRIN2A-206ENST00000562109 4338 ntTSL 1 (best) BASIC10.93□□□□□ -0.66
CXCL1P09341 FAM161A-203ENST00000405894 3684 ntAPPRIS P3 TSL 1 (best) BASIC10.93□□□□□ -0.66
CXCL1P09341 AC020741.1-201ENST00000381217 2079 ntTSL 2 BASIC10.93□□□□□ -0.66
CXCL1P09341 PCDHGA4-202ENST00000612927 2691 ntAPPRIS ALT2 BASIC10.92□□□□□ -0.66
CXCL1P09341 EML5-207ENST00000554922 9570 ntAPPRIS P1 TSL 5 BASIC10.92□□□□□ -0.66
CXCL1P09341 APOF-201ENST00000398189 1715 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
CXCL1P09341 SPIN3-245ENST00000640768 1722 ntTSL 5 BASIC10.92□□□□□ -0.66
CXCL1P09341 OR2A25-202ENST00000641441 1733 ntAPPRIS P1 BASIC10.92□□□□□ -0.66
CXCL1P09341 FAM95B1-201ENST00000455995 4236 ntTSL 2 BASIC10.92□□□□□ -0.66
CXCL1P09341 AL355336.1-201ENST00000451355 1676 ntTSL 2 BASIC10.92□□□□□ -0.66
CXCL1P09341 POFUT2-203ENST00000349485 2871 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
CXCL1P09341 RRBP1-203ENST00000377807 3792 ntAPPRIS P2 TSL 5 BASIC10.92□□□□□ -0.66
CXCL1P09341 MEF2D-204ENST00000464356 5598 ntAPPRIS ALT2 TSL 5 BASIC10.92□□□□□ -0.66
CXCL1P09341 RAB27A-201ENST00000336787 3446 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
CXCL1P09341 RGR-201ENST00000358110 1349 ntTSL 1 (best) BASIC10.92□□□□□ -0.66
CXCL1P09341 SPACA6P-AS-201ENST00000602324 3962 ntTSL 2 BASIC10.92□□□□□ -0.66
CXCL1P09341 ACOT11-201ENST00000343744 3082 ntAPPRIS ALT2 TSL 1 (best) BASIC10.92□□□□□ -0.66
CXCL1P09341 SOGA1-201ENST00000237536 14371 ntAPPRIS ALT2 TSL 5 BASIC10.92□□□□□ -0.66
CXCL1P09341 TPX2-202ENST00000340513 3605 ntTSL 1 (best) BASIC10.92□□□□□ -0.66
CXCL1P09341 DHRS7B-202ENST00000395511 2175 ntAPPRIS P3 TSL 1 (best) BASIC10.92□□□□□ -0.66
CXCL1P09341 GSN-205ENST00000373823 3341 ntAPPRIS P1 TSL 5 BASIC10.92□□□□□ -0.66
CXCL1P09341 ANKRD27-204ENST00000587352 3301 ntTSL 1 (best) BASIC10.92□□□□□ -0.66
CXCL1P09341 NFATC4-209ENST00000553879 2707 ntAPPRIS ALT2 TSL 2 BASIC10.92□□□□□ -0.66
CXCL1P09341 OCIAD1-202ENST00000381473 1594 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
CXCL1P09341 SLC8B1-213ENST00000552014 3289 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
CXCL1P09341 C2orf40-201ENST00000238044 789 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
CXCL1P09341 ROPN1L-201ENST00000274134 1066 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
CXCL1P09341 CTRB2-201ENST00000303037 901 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
CXCL1P09341 CRIP1-202ENST00000392531 485 ntAPPRIS P1 TSL 2 BASIC10.92□□□□□ -0.66
CXCL1P09341 MIR940-201ENST00000401276 94 ntBASIC10.92□□□□□ -0.66
CXCL1P09341 PSMA8-203ENST00000415576 1280 ntAPPRIS ALT2 TSL 1 (best) BASIC10.92□□□□□ -0.66
CXCL1P09341 LINC01264-201ENST00000431395 500 ntTSL 3 BASIC10.92□□□□□ -0.66
CXCL1P09341 DARS-AS1-203ENST00000438432 768 ntTSL 3 BASIC10.92□□□□□ -0.66
CXCL1P09341 LINC01160-201ENST00000441004 768 ntTSL 3 BASIC10.92□□□□□ -0.66
CXCL1P09341 APOA1-AS-201ENST00000444200 563 ntTSL 4 BASIC10.92□□□□□ -0.66
CXCL1P09341 PPP6R2P1-201ENST00000450880 1275 ntBASIC10.92□□□□□ -0.66
CXCL1P09341 KRBOX4-206ENST00000478600 730 ntAPPRIS ALT2 TSL 2 BASIC10.92□□□□□ -0.66
CXCL1P09341 KRBOX4-207ENST00000487081 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC10.92□□□□□ -0.66
CXCL1P09341 AP001007.1-201ENST00000526796 645 ntTSL 2 BASIC10.92□□□□□ -0.66
CXCL1P09341 AC008750.1-201ENST00000532473 492 ntTSL 3 BASIC10.92□□□□□ -0.66
CXCL1P09341 AC131206.1-201ENST00000538078 1211 ntBASIC10.92□□□□□ -0.66
CXCL1P09341 LINC02285-201ENST00000557121 943 ntTSL 2 BASIC10.92□□□□□ -0.66
CXCL1P09341 AC129507.1-201ENST00000570711 1013 ntTSL 2 BASIC10.92□□□□□ -0.66
CXCL1P09341 SMCO4-206ENST00000596676 180 ntAPPRIS P1 BASIC10.92□□□□□ -0.66
CXCL1P09341 AC011495.2-201ENST00000600665 360 ntTSL 5 BASIC10.92□□□□□ -0.66
CXCL1P09341 NOS3-201ENST00000297494 4388 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
CXCL1P09341 GAS6-AS1-201ENST00000458001 7169 ntTSL 5 BASIC10.92□□□□□ -0.66
CXCL1P09341 TM6SF2-201ENST00000389363 1505 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
CXCL1P09341 TEX26-AS1-205ENST00000585870 2053 ntTSL 2 BASIC10.92□□□□□ -0.66
CXCL1P09341 CPEB1-213ENST00000617462 2068 ntTSL 1 (best) BASIC10.92□□□□□ -0.66
CXCL1P09341 WDR81-205ENST00000437219 3184 ntTSL 2 BASIC10.92□□□□□ -0.66
CXCL1P09341 GPC6-201ENST00000377047 6467 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
CXCL1P09341 PARP3-201ENST00000398755 2336 ntAPPRIS ALT2 TSL 1 (best) BASIC10.92□□□□□ -0.66
CXCL1P09341 TMEM246-202ENST00000374848 4244 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
CXCL1P09341 ZNF341-201ENST00000342427 3661 ntAPPRIS P3 TSL 1 (best) BASIC10.92□□□□□ -0.66
CXCL1P09341 PIGG-217ENST00000509768 3121 ntTSL 1 (best) BASIC10.92□□□□□ -0.66
CXCL1P09341 CEP83-208ENST00000547575 3122 ntTSL 2 BASIC10.92□□□□□ -0.66
CXCL1P09341 RPP40-202ENST00000380051 1483 ntAPPRIS P1 TSL 5 BASIC10.92□□□□□ -0.66
CXCL1P09341 CKMT2-203ENST00000437669 1479 ntAPPRIS P1 TSL 5 BASIC10.92□□□□□ -0.66
CXCL1P09341 ELP2-221ENST00000542824 2288 ntTSL 1 (best) BASIC10.92□□□□□ -0.66
CXCL1P09341 GPR55-205ENST00000622008 2526 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
CXCL1P09341 DLEU2-201ENST00000235290 1739 ntTSL 5 BASIC10.92□□□□□ -0.66
CXCL1P09341 TXNRD1-201ENST00000354940 4082 ntAPPRIS ALT1 TSL 5 BASIC10.92□□□□□ -0.66
CXCL1P09341 MAN2C1-201ENST00000267978 3284 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
CXCL1P09341 BTBD3-203ENST00000399006 4826 ntAPPRIS ALT1 TSL 5 BASIC10.92□□□□□ -0.66
CXCL1P09341 BORA-202ENST00000377815 1673 ntAPPRIS ALT2 TSL 2 BASIC10.92□□□□□ -0.66
CXCL1P09341 TMEM131L-203ENST00000409959 5017 ntAPPRIS ALT2 TSL 5 BASIC10.92□□□□□ -0.66
CXCL1P09341 RUBCNL-212ENST00000631139 1948 ntAPPRIS ALT2 TSL 2 BASIC10.92□□□□□ -0.66
CXCL1P09341 RGL1-202ENST00000360851 4724 ntAPPRIS ALT2 TSL 1 (best) BASIC10.92□□□□□ -0.66
CXCL1P09341 MAN2B1-201ENST00000221363 3170 ntAPPRIS ALT2 TSL 1 (best) BASIC10.91□□□□□ -0.66
CXCL1P09341 C5orf15-201ENST00000231512 2358 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
CXCL1P09341 ZNF461-201ENST00000360357 2361 ntAPPRIS ALT2 TSL 2 BASIC10.91□□□□□ -0.66
CXCL1P09341 LDLR-207ENST00000558013 3144 ntAPPRIS ALT2 TSL 1 (best) BASIC10.91□□□□□ -0.66
CXCL1P09341 GOLGA6L7P-201ENST00000567390 2397 ntAPPRIS P1 TSL 5 BASIC10.91□□□□□ -0.66
CXCL1P09341 AC018645.3-201ENST00000628855 2646 ntBASIC10.91□□□□□ -0.66
CXCL1P09341 STX3-207ENST00000633708 3111 ntTSL 5 BASIC10.91□□□□□ -0.66
CXCL1P09341 PCBP2-202ENST00000359462 1814 ntAPPRIS ALT1 TSL 1 (best) BASIC10.91□□□□□ -0.66
Retrieved 100 of 98,524 protein–RNA pairs in 55 ms