Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 AC024619.2-201ENST00000581964 517 ntTSL 5 BASIC12.05□□□□□ -0.48
SDCBPO00560 CYP1B1-AS1-221ENST00000627172 995 ntTSL 5 BASIC12.05□□□□□ -0.48
SDCBPO00560 AL590644.3-201ENST00000635428 1228 ntTSL 5 BASIC12.05□□□□□ -0.48
SDCBPO00560 MKRN5P-201ENST00000445263 1467 ntBASIC12.05□□□□□ -0.48
SDCBPO00560 HOXC4-202ENST00000430889 1666 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
SDCBPO00560 AL355102.3-201ENST00000554299 1678 ntBASIC12.05□□□□□ -0.48
SDCBPO00560 FANCA-213ENST00000563673 1694 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
SDCBPO00560 UBE2A-202ENST00000371558 1874 ntAPPRIS P2 TSL 1 (best) BASIC12.05□□□□□ -0.48
SDCBPO00560 C11orf16-201ENST00000326053 1908 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
SDCBPO00560 PDIA3P1-201ENST00000471856 1510 ntBASIC12.05□□□□□ -0.48
SDCBPO00560 ZNF750-202ENST00000572562 1513 ntTSL 2 BASIC12.05□□□□□ -0.48
SDCBPO00560 CTSW-201ENST00000307886 1300 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
SDCBPO00560 AL109910.1-201ENST00000452071 1330 ntTSL 2 BASIC12.05□□□□□ -0.48
SDCBPO00560 LDB3-204ENST00000372066 1598 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
SDCBPO00560 RWDD4-205ENST00000510968 1551 ntTSL 4 BASIC12.05□□□□□ -0.48
SDCBPO00560 AC012531.2-201ENST00000512206 1389 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
SDCBPO00560 FAM120B-205ENST00000630384 3721 ntAPPRIS ALT2 TSL 2 BASIC12.04□□□□□ -0.48
SDCBPO00560 EPN2-205ENST00000395626 2863 ntTSL 2 BASIC12.04□□□□□ -0.48
SDCBPO00560 SEPT6-201ENST00000343984 2693 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
SDCBPO00560 TMOD1-201ENST00000259365 3343 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
SDCBPO00560 LGALS12-204ENST00000415491 1816 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
SDCBPO00560 TRAF6-202ENST00000526995 4627 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
SDCBPO00560 RCAN2-204ENST00000405162 2457 ntTSL 5 BASIC12.04□□□□□ -0.48
SDCBPO00560 GTPBP4-202ENST00000360803 5075 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
SDCBPO00560 AL359845.1-201ENST00000458202 1648 ntBASIC12.04□□□□□ -0.48
SDCBPO00560 SPOCK3-218ENST00000511531 2908 ntAPPRIS ALT2 TSL 5 BASIC12.04□□□□□ -0.48
SDCBPO00560 SERPINH1-205ENST00000525876 2283 ntTSL 2 BASIC12.04□□□□□ -0.48
SDCBPO00560 LINC00511-213ENST00000581549 2265 ntTSL 2 BASIC12.04□□□□□ -0.48
SDCBPO00560 OPLAH-204ENST00000618853 4031 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
SDCBPO00560 USP39-207ENST00000450066 2086 ntTSL 2 BASIC12.04□□□□□ -0.48
SDCBPO00560 CCNI-201ENST00000237654 2772 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
SDCBPO00560 CPT1C-202ENST00000323446 2783 ntAPPRIS P3 TSL 1 (best) BASIC12.04□□□□□ -0.48
SDCBPO00560 SEPT12-201ENST00000268231 1469 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
SDCBPO00560 PER3-209ENST00000614998 6261 ntAPPRIS ALT2 TSL 1 (best) BASIC12.04□□□□□ -0.48
SDCBPO00560 NR4A2-209ENST00000426264 2642 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
SDCBPO00560 ASB3-202ENST00000394717 1734 ntTSL 2 BASIC12.04□□□□□ -0.48
SDCBPO00560 ITSN1-208ENST00000399349 5191 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
SDCBPO00560 SHC1P1-201ENST00000425230 1745 ntBASIC12.04□□□□□ -0.48
SDCBPO00560 ZNF263-202ENST00000538765 1721 ntTSL 2 BASIC12.04□□□□□ -0.48
SDCBPO00560 LINC00668-205ENST00000581571 1748 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
SDCBPO00560 KIF17-202ENST00000375044 3572 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
SDCBPO00560 GZMB-202ENST00000382540 816 ntTSL 5 BASIC12.04□□□□□ -0.48
SDCBPO00560 MXI1-205ENST00000393134 889 ntTSL 2 BASIC12.04□□□□□ -0.48
SDCBPO00560 BLCAP-202ENST00000397131 633 ntAPPRIS P1 TSL 3 BASIC12.04□□□□□ -0.48
SDCBPO00560 BLCAP-203ENST00000397134 566 ntAPPRIS P1 TSL 4 BASIC12.04□□□□□ -0.48
SDCBPO00560 MB-205ENST00000406324 582 ntAPPRIS P1 TSL 2 BASIC12.04□□□□□ -0.48
SDCBPO00560 HNRNPA1P27-201ENST00000412087 955 ntBASIC12.04□□□□□ -0.48
SDCBPO00560 LARGE-AS1-202ENST00000424291 1065 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
SDCBPO00560 SKA2-202ENST00000437036 625 ntTSL 2 BASIC12.04□□□□□ -0.48
SDCBPO00560 RPL7P3-201ENST00000441388 714 ntBASIC12.04□□□□□ -0.48
SDCBPO00560 AL162457.2-202ENST00000442888 679 ntTSL 5 BASIC12.04□□□□□ -0.48
SDCBPO00560 KLF2P4-201ENST00000451959 1225 ntBASIC12.04□□□□□ -0.48
SDCBPO00560 FKBP11-203ENST00000453172 959 ntAPPRIS ALT2 TSL 2 BASIC12.04□□□□□ -0.48
SDCBPO00560 PRSS30P-204ENST00000489864 650 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
SDCBPO00560 KLF3-AS1-204ENST00000505240 567 ntTSL 4 BASIC12.04□□□□□ -0.48
SDCBPO00560 AP000812.2-201ENST00000538934 718 ntBASIC12.04□□□□□ -0.48
SDCBPO00560 UEVLD-212ENST00000541984 755 ntTSL 3 BASIC12.04□□□□□ -0.48
SDCBPO00560 AC079316.1-201ENST00000548397 411 ntBASIC12.04□□□□□ -0.48
SDCBPO00560 AC023310.1-201ENST00000554836 735 ntBASIC12.04□□□□□ -0.48
SDCBPO00560 LINC02299-201ENST00000556669 430 ntTSL 5 BASIC12.04□□□□□ -0.48
SDCBPO00560 KLF3-AS1-207ENST00000620339 558 ntTSL 4 BASIC12.04□□□□□ -0.48
SDCBPO00560 LHFPL2-201ENST00000380345 5043 ntAPPRIS P1 TSL 5 BASIC12.04□□□□□ -0.48
SDCBPO00560 CD99L2-205ENST00000437787 3493 ntTSL 2 BASIC12.04□□□□□ -0.48
SDCBPO00560 CENPBD1P1-204ENST00000487264 1308 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
SDCBPO00560 TRPM5-202ENST00000528453 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC12.04□□□□□ -0.48
SDCBPO00560 PTPRVP-205ENST00000641549 5067 ntBASIC12.04□□□□□ -0.48
SDCBPO00560 RANBP1-208ENST00000430524 1389 ntTSL 3 BASIC12.04□□□□□ -0.48
SDCBPO00560 TRMT10B-207ENST00000537911 2108 ntTSL 2 BASIC12.04□□□□□ -0.48
SDCBPO00560 ZIK1-204ENST00000597850 4181 ntAPPRIS P3 TSL 1 (best) BASIC12.04□□□□□ -0.48
SDCBPO00560 SAP30BP-202ENST00000355423 2439 ntTSL 2 BASIC12.03□□□□□ -0.48
SDCBPO00560 TBX3-202ENST00000349155 4723 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
SDCBPO00560 LRRC41-208ENST00000617760 2158 ntTSL 5 BASIC12.03□□□□□ -0.48
SDCBPO00560 FAM78A-203ENST00000372271 3966 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
SDCBPO00560 MRPS7-201ENST00000245539 1406 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
SDCBPO00560 STYXL1-201ENST00000248600 1415 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
SDCBPO00560 PLAT-201ENST00000220809 2706 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
SDCBPO00560 AL121827.1-201ENST00000370257 3264 ntTSL 2 BASIC12.03□□□□□ -0.48
SDCBPO00560 AL365199.1-201ENST00000421320 1714 ntTSL 2 BASIC12.03□□□□□ -0.48
SDCBPO00560 EIF4G1-207ENST00000411531 4683 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
SDCBPO00560 CKMT2-203ENST00000437669 1479 ntAPPRIS P1 TSL 5 BASIC12.03□□□□□ -0.48
SDCBPO00560 PLA1A-204ENST00000488919 1456 ntTSL 2 BASIC12.03□□□□□ -0.48
SDCBPO00560 RHD-209ENST00000568195 1467 ntAPPRIS ALT2 TSL 1 (best) BASIC12.03□□□□□ -0.48
SDCBPO00560 NFATC2-202ENST00000396009 7437 ntAPPRIS P3 TSL 1 (best) BASIC12.03□□□□□ -0.48
SDCBPO00560 ARHGAP33-204ENST00000378944 4219 ntAPPRIS ALT2 TSL 2 BASIC12.03□□□□□ -0.48
SDCBPO00560 WASF3-202ENST00000361042 4823 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
SDCBPO00560 HSPA6-201ENST00000309758 2371 ntAPPRIS P1 BASIC12.03□□□□□ -0.48
SDCBPO00560 ZNF568-206ENST00000455427 2378 ntTSL 2 BASIC12.03□□□□□ -0.48
SDCBPO00560 RASA4-203ENST00000461209 3244 ntTSL 2 BASIC12.03□□□□□ -0.48
SDCBPO00560 COG5-201ENST00000297135 4060 ntAPPRIS P4 TSL 1 (best) BASIC12.03□□□□□ -0.48
SDCBPO00560 ACTR2-202ENST00000377982 2685 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
SDCBPO00560 DDX54-201ENST00000306014 4377 ntAPPRIS P3 TSL 1 (best) BASIC12.03□□□□□ -0.48
SDCBPO00560 LRRC8A-203ENST00000372600 4355 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
SDCBPO00560 VILL-201ENST00000283713 2970 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
SDCBPO00560 NOL4L-202ENST00000326071 701 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
SDCBPO00560 COPE-202ENST00000349893 948 ntTSL 2 BASIC12.03□□□□□ -0.48
SDCBPO00560 PKIG-201ENST00000349959 1153 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
SDCBPO00560 MIR326-201ENST00000362220 95 ntBASIC12.03□□□□□ -0.48
SDCBPO00560 BEX3-203ENST00000372635 805 ntAPPRIS P1 TSL 2 BASIC12.03□□□□□ -0.48
SDCBPO00560 FAM27C-201ENST00000377542 616 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
SDCBPO00560 ZG16B-201ENST00000382280 831 ntAPPRIS P2 TSL 1 (best) BASIC12.03□□□□□ -0.48
Retrieved 100 of 98,524 protein–RNA pairs in 39.5 ms