Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 HCST-202ENST00000437550 445 ntAPPRIS ALT2 TSL 1 (best) BASIC13.28□□□□□ -0.28
DEPDC4Q8N2C3 AC245100.3-201ENST00000441281 285 ntBASIC13.28□□□□□ -0.28
DEPDC4Q8N2C3 FO681548.1-201ENST00000455617 1132 ntBASIC13.28□□□□□ -0.28
DEPDC4Q8N2C3 MAPK10-223ENST00000511167 1265 ntTSL 5 BASIC13.28□□□□□ -0.28
DEPDC4Q8N2C3 NME2-207ENST00000514264 850 ntAPPRIS P1 TSL 2 BASIC13.28□□□□□ -0.28
DEPDC4Q8N2C3 CACNA2D4-208ENST00000538027 952 ntTSL 5 BASIC13.28□□□□□ -0.28
DEPDC4Q8N2C3 AP000808.2-201ENST00000542410 569 ntTSL 4 BASIC13.28□□□□□ -0.28
DEPDC4Q8N2C3 TSPAN11-204ENST00000546076 1058 ntAPPRIS P1 TSL 2 BASIC13.28□□□□□ -0.28
DEPDC4Q8N2C3 IL32-232ENST00000552356 623 ntAPPRIS ALT2 TSL 3 BASIC13.28□□□□□ -0.28
DEPDC4Q8N2C3 AL163974.1-201ENST00000554540 466 ntTSL 5 BASIC13.28□□□□□ -0.28
DEPDC4Q8N2C3 AC023310.1-201ENST00000554836 735 ntBASIC13.28□□□□□ -0.28
DEPDC4Q8N2C3 AL118558.1-202ENST00000557242 451 ntTSL 3 BASIC13.28□□□□□ -0.28
DEPDC4Q8N2C3 AC013391.2-201ENST00000559041 501 ntTSL 5 BASIC13.28□□□□□ -0.28
DEPDC4Q8N2C3 AC066613.1-202ENST00000560727 630 ntTSL 5 BASIC13.28□□□□□ -0.28
DEPDC4Q8N2C3 CX3CL1-203ENST00000564948 563 ntTSL 3 BASIC13.28□□□□□ -0.28
DEPDC4Q8N2C3 AC010641.1-201ENST00000591757 529 ntTSL 3 BASIC13.28□□□□□ -0.28
DEPDC4Q8N2C3 AC026790.2-201ENST00000606282 430 ntBASIC13.28□□□□□ -0.28
DEPDC4Q8N2C3 LINC02351-201ENST00000614728 289 ntTSL 2 BASIC13.28□□□□□ -0.28
DEPDC4Q8N2C3 SGK2-203ENST00000373092 1906 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
DEPDC4Q8N2C3 XIRP1-203ENST00000421646 2596 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
DEPDC4Q8N2C3 OLFML3-203ENST00000393300 1961 ntTSL 3 BASIC13.28□□□□□ -0.28
DEPDC4Q8N2C3 TBX3-202ENST00000349155 4723 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
DEPDC4Q8N2C3 ADRA2B-201ENST00000620793 3371 ntAPPRIS P1 BASIC13.28□□□□□ -0.28
DEPDC4Q8N2C3 METAP1D-201ENST00000315796 3419 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
DEPDC4Q8N2C3 SLC25A3-217ENST00000552981 1351 ntAPPRIS ALT1 TSL 1 (best) BASIC13.28□□□□□ -0.28
DEPDC4Q8N2C3 ARNTL-202ENST00000401424 2788 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
DEPDC4Q8N2C3 SIX4-201ENST00000216513 6285 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
DEPDC4Q8N2C3 ENO2-205ENST00000535366 2827 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
DEPDC4Q8N2C3 GOLGA7B-203ENST00000596005 6378 ntTSL 2 BASIC13.28□□□□□ -0.28
DEPDC4Q8N2C3 ZDHHC4-203ENST00000396707 1461 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
DEPDC4Q8N2C3 F10-203ENST00000409306 1450 ntTSL 3 BASIC13.28□□□□□ -0.28
DEPDC4Q8N2C3 LIMS4-204ENST00000632897 1460 ntAPPRIS P1 TSL 5 BASIC13.28□□□□□ -0.28
DEPDC4Q8N2C3 FTO-214ENST00000636218 2227 ntTSL 5 BASIC13.28□□□□□ -0.28
DEPDC4Q8N2C3 MYO9B-204ENST00000594824 7595 ntAPPRIS P1 TSL 5 BASIC13.28□□□□□ -0.28
DEPDC4Q8N2C3 SEMA3F-201ENST00000002829 3802 ntAPPRIS P3 TSL 1 (best) BASIC13.28□□□□□ -0.28
DEPDC4Q8N2C3 P2RY4-201ENST00000374519 1595 ntAPPRIS P1 BASIC13.28□□□□□ -0.28
DEPDC4Q8N2C3 TLE3-203ENST00000451782 2356 ntAPPRIS ALT1 TSL 5 BASIC13.28□□□□□ -0.28
DEPDC4Q8N2C3 C20orf202-201ENST00000400633 1604 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
DEPDC4Q8N2C3 ATG7-201ENST00000354449 4959 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
DEPDC4Q8N2C3 PLXNB1-201ENST00000296440 7143 ntAPPRIS P2 TSL 1 (best) BASIC13.27□□□□□ -0.28
DEPDC4Q8N2C3 METAP1-201ENST00000296411 2791 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
DEPDC4Q8N2C3 TLK1-202ENST00000360843 5726 ntTSL 1 (best) BASIC13.27□□□□□ -0.28
DEPDC4Q8N2C3 MED6-201ENST00000256379 1995 ntAPPRIS P2 TSL 1 (best) BASIC13.27□□□□□ -0.28
DEPDC4Q8N2C3 C7orf57-202ENST00000420324 1957 ntTSL 5 BASIC13.27□□□□□ -0.28
DEPDC4Q8N2C3 HLCS-201ENST00000336648 6010 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
DEPDC4Q8N2C3 AL022313.4-201ENST00000562756 2046 ntBASIC13.27□□□□□ -0.28
DEPDC4Q8N2C3 TBCE-207ENST00000543662 2117 ntAPPRIS ALT2 TSL 2 BASIC13.27□□□□□ -0.28
DEPDC4Q8N2C3 MYO7A-202ENST00000409709 7462 ntTSL 1 (best) BASIC13.27□□□□□ -0.28
DEPDC4Q8N2C3 MED15-204ENST00000406969 3210 ntTSL 1 (best) BASIC13.27□□□□□ -0.28
DEPDC4Q8N2C3 CYTH1-201ENST00000361101 3311 ntAPPRIS ALT1 TSL 1 (best) BASIC13.27□□□□□ -0.28
DEPDC4Q8N2C3 CYTH1-202ENST00000446868 3311 ntAPPRIS ALT1 TSL 5 BASIC13.27□□□□□ -0.28
DEPDC4Q8N2C3 DEK-202ENST00000397239 3427 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
DEPDC4Q8N2C3 BHLHE40-AS1-204ENST00000620618 2355 ntTSL 2 BASIC13.27□□□□□ -0.29
DEPDC4Q8N2C3 ENO2-201ENST00000229277 2423 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
DEPDC4Q8N2C3 DYNLRB2-201ENST00000305904 497 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
DEPDC4Q8N2C3 GNG5-201ENST00000370641 920 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
DEPDC4Q8N2C3 RPF1-202ENST00000370656 724 ntTSL 2 BASIC13.27□□□□□ -0.29
DEPDC4Q8N2C3 AC092933.1-201ENST00000393644 945 ntBASIC13.27□□□□□ -0.29
DEPDC4Q8N2C3 HSPC324-201ENST00000411904 557 ntTSL 2 BASIC13.27□□□□□ -0.29
DEPDC4Q8N2C3 KLF2P2-201ENST00000416807 1039 ntBASIC13.27□□□□□ -0.29
DEPDC4Q8N2C3 LINC00116-202ENST00000426713 461 ntAPPRIS ALT2 TSL 3 BASIC13.27□□□□□ -0.29
DEPDC4Q8N2C3 GEMIN4-202ENST00000437269 1182 ntTSL 2 BASIC13.27□□□□□ -0.29
DEPDC4Q8N2C3 AK2P2-201ENST00000439142 405 ntBASIC13.27□□□□□ -0.29
DEPDC4Q8N2C3 YBX1P6-201ENST00000442962 1002 ntBASIC13.27□□□□□ -0.29
DEPDC4Q8N2C3 MPZL1-209ENST00000474859 630 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
DEPDC4Q8N2C3 ASF1B-202ENST00000474890 765 ntTSL 2 BASIC13.27□□□□□ -0.29
DEPDC4Q8N2C3 CLRN2-201ENST00000511148 823 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
DEPDC4Q8N2C3 IL32-222ENST00000533097 814 ntAPPRIS P4 TSL 2 BASIC13.27□□□□□ -0.29
DEPDC4Q8N2C3 C1RL-212ENST00000545337 813 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
DEPDC4Q8N2C3 MIR22HG-212ENST00000577164 931 ntTSL 4 BASIC13.27□□□□□ -0.29
DEPDC4Q8N2C3 ANAPC11-215ENST00000578550 599 ntAPPRIS P1 TSL 2 BASIC13.27□□□□□ -0.29
DEPDC4Q8N2C3 PRCD-204ENST00000586148 630 ntAPPRIS P1 TSL 5 BASIC13.27□□□□□ -0.29
DEPDC4Q8N2C3 AC132938.4-201ENST00000623835 848 ntBASIC13.27□□□□□ -0.29
DEPDC4Q8N2C3 RHOXF1P1-202ENST00000635473 501 ntBASIC13.27□□□□□ -0.29
DEPDC4Q8N2C3 IL32-201ENST00000008180 1056 ntAPPRIS ALT2 TSL 2 BASIC13.27□□□□□ -0.29
DEPDC4Q8N2C3 SMC6-201ENST00000351948 5173 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
DEPDC4Q8N2C3 FBLN7-203ENST00000409450 1394 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
DEPDC4Q8N2C3 B9D1-209ENST00000477478 1353 ntTSL 3 BASIC13.27□□□□□ -0.29
DEPDC4Q8N2C3 POM121L14P-201ENST00000406100 1558 ntBASIC13.27□□□□□ -0.29
DEPDC4Q8N2C3 C12orf76-209ENST00000615315 1580 ntTSL 5 BASIC13.27□□□□□ -0.29
DEPDC4Q8N2C3 AL590440.2-201ENST00000641973 1595 ntBASIC13.27□□□□□ -0.29
DEPDC4Q8N2C3 KIFC3-211ENST00000562903 3221 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
DEPDC4Q8N2C3 MSH6-214ENST00000616033 3429 ntTSL 5 BASIC13.27□□□□□ -0.29
DEPDC4Q8N2C3 AP1M2-201ENST00000250244 1749 ntAPPRIS P3 TSL 1 (best) BASIC13.27□□□□□ -0.29
DEPDC4Q8N2C3 TSPAN31-201ENST00000257910 1849 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
DEPDC4Q8N2C3 PGAP2-203ENST00000396986 1837 ntTSL 2 BASIC13.27□□□□□ -0.29
DEPDC4Q8N2C3 F2-205ENST00000530231 1849 ntTSL 5 BASIC13.27□□□□□ -0.29
DEPDC4Q8N2C3 UQCRB-201ENST00000287022 5575 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
DEPDC4Q8N2C3 AC022007.1-201ENST00000383808 1897 ntTSL 2 BASIC13.27□□□□□ -0.29
DEPDC4Q8N2C3 LDB3-207ENST00000542786 1889 ntTSL 2 BASIC13.27□□□□□ -0.29
DEPDC4Q8N2C3 AC093899.2-201ENST00000513963 1935 ntAPPRIS P1 TSL 2 BASIC13.27□□□□□ -0.29
DEPDC4Q8N2C3 ABAT-215ENST00000569156 1911 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
DEPDC4Q8N2C3 GCNT7-201ENST00000243913 2064 ntTSL 2 BASIC13.27□□□□□ -0.29
DEPDC4Q8N2C3 GEM-201ENST00000297596 2208 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
DEPDC4Q8N2C3 ZNF7-202ENST00000446747 2242 ntAPPRIS ALT2 TSL 1 (best) BASIC13.27□□□□□ -0.29
DEPDC4Q8N2C3 RUFY4-201ENST00000344321 2352 ntAPPRIS P1 TSL 5 BASIC13.27□□□□□ -0.29
DEPDC4Q8N2C3 TGM2-201ENST00000361475 5070 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
DEPDC4Q8N2C3 LIMD1-202ENST00000440097 2773 ntTSL 5 BASIC13.26□□□□□ -0.29
DEPDC4Q8N2C3 GATAD2A-203ENST00000404158 5776 ntAPPRIS ALT1 TSL 2 BASIC13.26□□□□□ -0.29
DEPDC4Q8N2C3 ALPP-201ENST00000392027 2971 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Retrieved 100 of 98,524 protein–RNA pairs in 53.3 ms