Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 TSFM-201ENST00000323833 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC11.83□□□□□ -0.52
PDLIM3Q53GG5 PFDN5-202ENST00000334478 586 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
PDLIM3Q53GG5 NCR3-201ENST00000340027 1042 ntAPPRIS P3 TSL 1 (best) BASIC11.83□□□□□ -0.52
PDLIM3Q53GG5 RN7SKP230-201ENST00000365642 335 ntBASIC11.83□□□□□ -0.52
PDLIM3Q53GG5 PSMB5-203ENST00000425762 900 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
PDLIM3Q53GG5 FOXP4-AS1-203ENST00000439386 404 ntTSL 3 BASIC11.83□□□□□ -0.52
PDLIM3Q53GG5 AL049698.1-202ENST00000441716 757 ntTSL 5 BASIC11.83□□□□□ -0.52
PDLIM3Q53GG5 HOMER2P2-201ENST00000451621 847 ntBASIC11.83□□□□□ -0.52
PDLIM3Q53GG5 HYAL1-208ENST00000457214 1084 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
PDLIM3Q53GG5 RPSAP36-202ENST00000494591 1261 ntBASIC11.83□□□□□ -0.52
PDLIM3Q53GG5 AC126915.1-201ENST00000522847 1038 ntBASIC11.83□□□□□ -0.52
PDLIM3Q53GG5 AL355310.3-201ENST00000526411 582 ntTSL 3 BASIC11.83□□□□□ -0.52
PDLIM3Q53GG5 ACR-203ENST00000529621 708 ntTSL 5 BASIC11.83□□□□□ -0.52
PDLIM3Q53GG5 AP003419.2-201ENST00000543494 711 ntAPPRIS P1 TSL 3 BASIC11.83□□□□□ -0.52
PDLIM3Q53GG5 LINC01475-201ENST00000548010 766 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
PDLIM3Q53GG5 AC138696.2-201ENST00000607376 223 ntBASIC11.83□□□□□ -0.52
PDLIM3Q53GG5 AL160412.1-202ENST00000616819 663 ntTSL 4 BASIC11.83□□□□□ -0.52
PDLIM3Q53GG5 WHRN-202ENST00000362057 3566 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
PDLIM3Q53GG5 NCBP2-204ENST00000427641 1946 ntTSL 2 BASIC11.83□□□□□ -0.52
PDLIM3Q53GG5 SYNCRIP-201ENST00000355238 6449 ntAPPRIS ALT1 TSL 1 (best) BASIC11.83□□□□□ -0.52
PDLIM3Q53GG5 STK33-203ENST00000396672 2558 ntAPPRIS P1 TSL 2 BASIC11.83□□□□□ -0.52
PDLIM3Q53GG5 LRP5L-202ENST00000402859 1661 ntAPPRIS P2 TSL 5 BASIC11.83□□□□□ -0.52
PDLIM3Q53GG5 ZNF71-201ENST00000328070 5428 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
PDLIM3Q53GG5 DCAF10-202ENST00000377724 3862 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
PDLIM3Q53GG5 SLC25A2-201ENST00000239451 1417 ntAPPRIS P1 BASIC11.83□□□□□ -0.52
PDLIM3Q53GG5 HDLBP-214ENST00000427183 6238 ntTSL 2 BASIC11.83□□□□□ -0.52
PDLIM3Q53GG5 CLIC5-208ENST00000544153 2051 ntTSL 2 BASIC11.83□□□□□ -0.52
PDLIM3Q53GG5 TMC8-201ENST00000318430 4411 ntAPPRIS P2 TSL 1 (best) BASIC11.83□□□□□ -0.52
PDLIM3Q53GG5 MPZ-204ENST00000491222 1824 ntTSL 2 BASIC11.83□□□□□ -0.52
PDLIM3Q53GG5 POTEM-201ENST00000547889 1817 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
PDLIM3Q53GG5 PRKCSH-212ENST00000591462 2209 ntAPPRIS ALT2 TSL 5 BASIC11.83□□□□□ -0.52
PDLIM3Q53GG5 LINC00863-201ENST00000439559 3287 ntTSL 5 BASIC11.83□□□□□ -0.52
PDLIM3Q53GG5 TMEM87A-201ENST00000307216 1598 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
PDLIM3Q53GG5 PUF60-209ENST00000527197 1559 ntTSL 5 BASIC11.83□□□□□ -0.52
PDLIM3Q53GG5 SEZ6L-206ENST00000404234 3444 ntAPPRIS ALT2 TSL 1 (best) BASIC11.83□□□□□ -0.52
PDLIM3Q53GG5 DENND1C-202ENST00000543576 2395 ntAPPRIS ALT2 TSL 2 BASIC11.83□□□□□ -0.52
PDLIM3Q53GG5 ACSL4-202ENST00000348502 5032 ntAPPRIS ALT1 TSL 1 (best) BASIC11.83□□□□□ -0.52
PDLIM3Q53GG5 PRMT3-202ENST00000331079 2653 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
PDLIM3Q53GG5 PATL2-208ENST00000560780 1863 ntAPPRIS ALT2 TSL 2 BASIC11.83□□□□□ -0.52
PDLIM3Q53GG5 FFAR4-201ENST00000371481 3605 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
PDLIM3Q53GG5 GPR161-209ENST00000539777 7655 ntTSL 2 BASIC11.82□□□□□ -0.52
PDLIM3Q53GG5 CLCN7-203ENST00000448525 4151 ntTSL 2 BASIC11.82□□□□□ -0.52
PDLIM3Q53GG5 FAM189A2-201ENST00000257515 2423 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
PDLIM3Q53GG5 PCDHB3-201ENST00000231130 3355 ntAPPRIS P1 BASIC11.82□□□□□ -0.52
PDLIM3Q53GG5 HHEX-202ENST00000472590 1605 ntTSL 2 BASIC11.82□□□□□ -0.52
PDLIM3Q53GG5 SPICE1-201ENST00000295872 5417 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
PDLIM3Q53GG5 ISLR-202ENST00000395118 2175 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
PDLIM3Q53GG5 PRMT7-201ENST00000339507 4238 ntAPPRIS P1 TSL 2 BASIC11.82□□□□□ -0.52
PDLIM3Q53GG5 BCAS4-201ENST00000358791 1378 ntAPPRIS ALT2 TSL 1 (best) BASIC11.82□□□□□ -0.52
PDLIM3Q53GG5 LIG1-202ENST00000427526 3027 ntAPPRIS ALT2 TSL 2 BASIC11.82□□□□□ -0.52
PDLIM3Q53GG5 CLDND1-215ENST00000507874 1380 ntTSL 3 BASIC11.82□□□□□ -0.52
PDLIM3Q53GG5 HSFX2-201ENST00000598963 1365 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
PDLIM3Q53GG5 DDX49-214ENST00000629999 1912 ntTSL 5 BASIC11.82□□□□□ -0.52
PDLIM3Q53GG5 AC006001.3-201ENST00000449307 7092 ntTSL 3 BASIC11.82□□□□□ -0.52
PDLIM3Q53GG5 BRAP-202ENST00000419234 4026 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
PDLIM3Q53GG5 ASB3-201ENST00000263634 2214 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
PDLIM3Q53GG5 AC105206.1-202ENST00000314927 2368 ntBASIC11.82□□□□□ -0.52
PDLIM3Q53GG5 PSIP1-203ENST00000380733 3391 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
PDLIM3Q53GG5 GDPD5-201ENST00000336898 3523 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
PDLIM3Q53GG5 SCN8A-209ENST00000627620 5943 ntAPPRIS ALT1 TSL 5 BASIC11.82□□□□□ -0.52
PDLIM3Q53GG5 UNC13D-201ENST00000207549 4393 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
PDLIM3Q53GG5 MST1R-201ENST00000296474 4536 ntAPPRIS P3 TSL 1 (best) BASIC11.82□□□□□ -0.52
PDLIM3Q53GG5 FIS1-201ENST00000223136 734 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
PDLIM3Q53GG5 ATP6V1F-201ENST00000249289 704 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
PDLIM3Q53GG5 C1QB-201ENST00000314933 1044 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
PDLIM3Q53GG5 FCRLB-201ENST00000336830 1193 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
PDLIM3Q53GG5 C6orf136-202ENST00000376471 614 ntTSL 3 BASIC11.82□□□□□ -0.52
PDLIM3Q53GG5 NDUFC1-203ENST00000394228 761 ntAPPRIS P1 TSL 2 BASIC11.82□□□□□ -0.52
PDLIM3Q53GG5 GPER1-203ENST00000397092 2971 ntAPPRIS P1 TSL 2 BASIC11.82□□□□□ -0.52
PDLIM3Q53GG5 PGGT1BP2-201ENST00000398621 1028 ntBASIC11.82□□□□□ -0.52
PDLIM3Q53GG5 PIK3IP1-202ENST00000402249 999 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
PDLIM3Q53GG5 CDRT15-201ENST00000420162 766 ntAPPRIS P2 TSL 1 (best) BASIC11.82□□□□□ -0.52
PDLIM3Q53GG5 AL451065.1-201ENST00000428958 238 ntTSL 5 BASIC11.82□□□□□ -0.52
PDLIM3Q53GG5 CDRT15-202ENST00000431716 655 ntAPPRIS ALT2 TSL 1 (best) BASIC11.82□□□□□ -0.52
PDLIM3Q53GG5 AGTRAP-206ENST00000452018 809 ntTSL 2 BASIC11.82□□□□□ -0.52
PDLIM3Q53GG5 FAM104B-207ENST00000489298 712 ntAPPRIS ALT2 TSL 2 BASIC11.82□□□□□ -0.52
PDLIM3Q53GG5 TIMM8B-201ENST00000504148 819 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
PDLIM3Q53GG5 AC093879.1-201ENST00000508959 1176 ntTSL 2 BASIC11.82□□□□□ -0.52
PDLIM3Q53GG5 AC246817.2-203ENST00000517357 569 ntTSL 4 BASIC11.82□□□□□ -0.52
PDLIM3Q53GG5 AC246817.2-202ENST00000519393 564 ntTSL 4 BASIC11.82□□□□□ -0.52
PDLIM3Q53GG5 LY6E-208ENST00000520531 490 ntTSL 2 BASIC11.82□□□□□ -0.52
PDLIM3Q53GG5 AP001582.1-201ENST00000525856 295 ntBASIC11.82□□□□□ -0.52
PDLIM3Q53GG5 AP001360.1-202ENST00000526934 479 ntTSL 3 BASIC11.82□□□□□ -0.52
PDLIM3Q53GG5 CLNS1A-211ENST00000532069 898 ntTSL 3 BASIC11.82□□□□□ -0.52
PDLIM3Q53GG5 HNRNPA1P48-202ENST00000565308 961 ntBASIC11.82□□□□□ -0.52
PDLIM3Q53GG5 AP001063.1-201ENST00000568332 529 ntBASIC11.82□□□□□ -0.52
PDLIM3Q53GG5 ANGPTL8-203ENST00000591200 504 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
PDLIM3Q53GG5 AC011510.1-201ENST00000598541 286 ntTSL 3 BASIC11.82□□□□□ -0.52
PDLIM3Q53GG5 PAX4-207ENST00000611453 1235 ntTSL 5 BASIC11.82□□□□□ -0.52
PDLIM3Q53GG5 AC138649.2-201ENST00000615886 705 ntBASIC11.82□□□□□ -0.52
PDLIM3Q53GG5 COX6A1P2-201ENST00000620597 330 ntBASIC11.82□□□□□ -0.52
PDLIM3Q53GG5 AC009084.3-201ENST00000623356 437 ntBASIC11.82□□□□□ -0.52
PDLIM3Q53GG5 HNRNPH1-203ENST00000393432 2279 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
PDLIM3Q53GG5 RAPGEF6-207ENST00000507093 5742 ntAPPRIS ALT1 TSL 1 (best) BASIC11.82□□□□□ -0.52
PDLIM3Q53GG5 P2RY4-201ENST00000374519 1595 ntAPPRIS P1 BASIC11.82□□□□□ -0.52
PDLIM3Q53GG5 CLCN7-201ENST00000262318 3717 ntTSL 5 BASIC11.82□□□□□ -0.52
PDLIM3Q53GG5 AC073548.1-201ENST00000624088 1882 ntBASIC11.82□□□□□ -0.52
PDLIM3Q53GG5 HPSE-201ENST00000311412 4615 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
PDLIM3Q53GG5 ARRB1-202ENST00000420843 3336 ntAPPRIS ALT1 TSL 1 (best) BASIC11.82□□□□□ -0.52
PDLIM3Q53GG5 DIS3L2-205ENST00000409401 2048 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
Retrieved 100 of 98,524 protein–RNA pairs in 56.5 ms