Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 AC011247.2-201ENST00000457097 233 ntTSL 4 BASIC13.05□□□□□ -0.32
RNF4P78317 CHCHD2P9-201ENST00000461726 456 ntBASIC13.05□□□□□ -0.32
RNF4P78317 AC124301.1-201ENST00000524885 602 ntTSL 3 BASIC13.05□□□□□ -0.32
RNF4P78317 EIF2B1-205ENST00000539951 848 ntTSL 5 BASIC13.05□□□□□ -0.32
RNF4P78317 SIGLEC22P-201ENST00000599104 714 ntBASIC13.05□□□□□ -0.32
RNF4P78317 SIGLEC22P-202ENST00000602065 544 ntTSL 4 BASIC13.05□□□□□ -0.32
RNF4P78317 LINC01278-203ENST00000608788 820 ntTSL 5 BASIC13.05□□□□□ -0.32
RNF4P78317 LINC01278-207ENST00000610234 555 ntTSL 4 BASIC13.05□□□□□ -0.32
RNF4P78317 GHRHR-212ENST00000611037 923 ntTSL 5 BASIC13.05□□□□□ -0.32
RNF4P78317 Metazoa_SRP.65-201ENST00000615602 264 ntBASIC13.05□□□□□ -0.32
RNF4P78317 Metazoa_SRP.69-201ENST00000615730 281 ntBASIC13.05□□□□□ -0.32
RNF4P78317 PRSS45-202ENST00000620911 1041 ntAPPRIS P1 TSL 5 BASIC13.05□□□□□ -0.32
RNF4P78317 CMC2-224ENST00000630396 481 ntTSL 5 BASIC13.05□□□□□ -0.32
RNF4P78317 CHEK2-201ENST00000328354 1867 ntAPPRIS P3 TSL 1 (best) BASIC13.05□□□□□ -0.32
RNF4P78317 FGF12-207ENST00000454309 3058 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
RNF4P78317 GP6-202ENST00000333884 2210 ntAPPRIS ALT2 TSL 1 (best) BASIC13.05□□□□□ -0.32
RNF4P78317 HSD17B4-215ENST00000510025 2589 ntTSL 2 BASIC13.05□□□□□ -0.32
RNF4P78317 IRAK4-212ENST00000551736 1684 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
RNF4P78317 FGFR1-201ENST00000326324 3816 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
RNF4P78317 DUSP18-204ENST00000403268 2920 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
RNF4P78317 FAM86C1-201ENST00000346333 2010 ntAPPRIS P3 TSL 1 (best) BASIC13.05□□□□□ -0.32
RNF4P78317 MAP3K4-204ENST00000392142 5490 ntAPPRIS P4 TSL 1 (best) BASIC13.05□□□□□ -0.32
RNF4P78317 AC010096.1-201ENST00000443897 1709 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
RNF4P78317 SATB2-201ENST00000260926 5318 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
RNF4P78317 CEP131-208ENST00000575907 3444 ntAPPRIS ALT2 TSL 1 (best) BASIC13.04□□□□□ -0.32
RNF4P78317 AC004554.1-201ENST00000422830 1468 ntBASIC13.04□□□□□ -0.32
RNF4P78317 RBP1-205ENST00000492918 1487 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
RNF4P78317 AAMP-204ENST00000444053 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC13.04□□□□□ -0.32
RNF4P78317 VIPAS39-208ENST00000556412 1832 ntTSL 2 BASIC13.04□□□□□ -0.32
RNF4P78317 TMUB2-211ENST00000589184 1837 ntTSL 5 BASIC13.04□□□□□ -0.32
RNF4P78317 TRIO-202ENST00000344204 11100 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
RNF4P78317 SMOC2-201ENST00000354536 3150 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
RNF4P78317 AL928654.5-201ENST00000624831 2501 ntBASIC13.04□□□□□ -0.32
RNF4P78317 AC006372.4-201ENST00000624122 1543 ntBASIC13.04□□□□□ -0.32
RNF4P78317 IL6R-201ENST00000344086 3217 ntAPPRIS ALT2 TSL 1 (best) BASIC13.04□□□□□ -0.32
RNF4P78317 SMARCA4-204ENST00000444061 4938 ntAPPRIS ALT1 TSL 5 BASIC13.04□□□□□ -0.32
RNF4P78317 ADAT1-201ENST00000307921 1869 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
RNF4P78317 NDFIP2-205ENST00000612570 4648 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
RNF4P78317 ARFGAP1-203ENST00000370283 3281 ntAPPRIS ALT2 TSL 1 (best) BASIC13.04□□□□□ -0.32
RNF4P78317 B3GNT7-201ENST00000287590 3706 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
RNF4P78317 ZNF75A-205ENST00000574298 2347 ntAPPRIS P1 TSL 2 BASIC13.04□□□□□ -0.32
RNF4P78317 COASY-211ENST00000590958 1976 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
RNF4P78317 FAM163B-201ENST00000356873 1131 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
RNF4P78317 TSPO2-201ENST00000373158 718 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
RNF4P78317 CIDEC-202ENST00000383817 1199 ntAPPRIS ALT1 TSL 1 (best) BASIC13.04□□□□□ -0.32
RNF4P78317 AL512430.1-201ENST00000392575 860 ntBASIC13.04□□□□□ -0.32
RNF4P78317 AC098934.1-203ENST00000442868 1262 ntBASIC13.04□□□□□ -0.32
RNF4P78317 LINC02028-203ENST00000443776 453 ntTSL 3 BASIC13.04□□□□□ -0.32
RNF4P78317 FTLP1-201ENST00000449155 526 ntBASIC13.04□□□□□ -0.32
RNF4P78317 AL355376.1-201ENST00000456082 517 ntTSL 3 BASIC13.04□□□□□ -0.32
RNF4P78317 AC108462.1-201ENST00000457467 850 ntTSL 3 BASIC13.04□□□□□ -0.32
RNF4P78317 RN7SL81P-201ENST00000493781 261 ntBASIC13.04□□□□□ -0.32
RNF4P78317 KLF17P1-201ENST00000547105 1126 ntBASIC13.04□□□□□ -0.32
RNF4P78317 FOS-206ENST00000555347 1280 ntTSL 2 BASIC13.04□□□□□ -0.32
RNF4P78317 IGHV3OR16-12-201ENST00000570121 353 ntAPPRIS P1 BASIC13.04□□□□□ -0.32
RNF4P78317 PGPEP1-203ENST00000595066 762 ntTSL 2 BASIC13.04□□□□□ -0.32
RNF4P78317 AC128714.1-201ENST00000637035 887 ntBASIC13.04□□□□□ -0.32
RNF4P78317 ATXN10-202ENST00000381061 3135 ntTSL 2 BASIC13.04□□□□□ -0.32
RNF4P78317 MYLK-208ENST00000475616 5745 ntAPPRIS ALT2 TSL 1 (best) BASIC13.04□□□□□ -0.32
RNF4P78317 FGGY-204ENST00000371218 2052 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
RNF4P78317 HNRNPH1-201ENST00000329433 2114 ntTSL 2 BASIC13.04□□□□□ -0.32
RNF4P78317 RPL18A-205ENST00000600147 1391 ntTSL 5 BASIC13.04□□□□□ -0.32
RNF4P78317 POM121-201ENST00000358357 5320 ntAPPRIS P3 TSL 1 (best) BASIC13.04□□□□□ -0.32
RNF4P78317 AC093797.1-201ENST00000411847 1789 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
RNF4P78317 PRPF8-205ENST00000572621 7445 ntAPPRIS P1 TSL 5 BASIC13.04□□□□□ -0.32
RNF4P78317 PARVB-201ENST00000338758 5429 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
RNF4P78317 GPR37-201ENST00000303921 3021 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
RNF4P78317 KRT8P18-201ENST00000413425 1445 ntBASIC13.04□□□□□ -0.32
RNF4P78317 CTSS-202ENST00000448301 1421 ntTSL 2 BASIC13.04□□□□□ -0.32
RNF4P78317 NUP210-201ENST00000254508 7193 ntAPPRIS P1 TSL 2 BASIC13.04□□□□□ -0.32
RNF4P78317 RAB37-206ENST00000392615 2655 ntTSL 3 BASIC13.04□□□□□ -0.32
RNF4P78317 RCSD1-202ENST00000367854 3135 ntAPPRIS P3 TSL 1 (best) BASIC13.04□□□□□ -0.32
RNF4P78317 SARS-202ENST00000369923 1882 ntTSL 5 BASIC13.04□□□□□ -0.32
RNF4P78317 LIMS4-204ENST00000632897 1460 ntAPPRIS P1 TSL 5 BASIC13.04□□□□□ -0.32
RNF4P78317 GORASP2-201ENST00000234160 3173 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
RNF4P78317 NXF1-213ENST00000532297 2795 ntAPPRIS P1 TSL 5 BASIC13.03□□□□□ -0.32
RNF4P78317 GPRASP1-203ENST00000444152 5809 ntAPPRIS P1 TSL 3 BASIC13.03□□□□□ -0.32
RNF4P78317 FSIP1-201ENST00000350221 2805 ntAPPRIS P2 TSL 1 (best) BASIC13.03□□□□□ -0.32
RNF4P78317 AC003986.1-201ENST00000452700 1526 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
RNF4P78317 SLC2A11-223ENST00000611880 3264 ntTSL 2 BASIC13.03□□□□□ -0.32
RNF4P78317 RPS6KC1-201ENST00000366959 5454 ntAPPRIS ALT1 TSL 2 BASIC13.03□□□□□ -0.32
RNF4P78317 RPS6KC1-202ENST00000366960 5490 ntAPPRIS P3 TSL 1 (best) BASIC13.03□□□□□ -0.32
RNF4P78317 ATXN7L1-207ENST00000477775 2426 ntTSL 2 BASIC13.03□□□□□ -0.32
RNF4P78317 STX18-AS1-207ENST00000610009 2406 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
RNF4P78317 PRDM10-204ENST00000423662 5998 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
RNF4P78317 MEGF8-201ENST00000251268 9549 ntAPPRIS ALT2 TSL 5 BASIC13.03□□□□□ -0.32
RNF4P78317 CILP2-202ENST00000586018 4234 ntAPPRIS ALT1 TSL 2 BASIC13.03□□□□□ -0.32
RNF4P78317 RNF41-202ENST00000394013 2452 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
RNF4P78317 MAP2K7-203ENST00000397983 3396 ntAPPRIS ALT1 TSL 1 (best) BASIC13.03□□□□□ -0.32
RNF4P78317 WNT7B-201ENST00000339464 3919 ntAPPRIS P2 TSL 1 (best) BASIC13.03□□□□□ -0.32
RNF4P78317 KCNIP1-210ENST00000636734 1613 ntTSL 5 BASIC13.03□□□□□ -0.32
RNF4P78317 NTNG1-208ENST00000370074 3048 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
RNF4P78317 COL8A2-201ENST00000303143 4447 ntAPPRIS P1 TSL 2 BASIC13.03□□□□□ -0.32
RNF4P78317 KCTD18-202ENST00000409157 2556 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
RNF4P78317 COQ7-209ENST00000569127 2575 ntTSL 2 BASIC13.03□□□□□ -0.32
RNF4P78317 CSRP1-202ENST00000367306 2129 ntAPPRIS P1 TSL 5 BASIC13.03□□□□□ -0.32
RNF4P78317 PGLYRP4-202ENST00000368739 2116 ntAPPRIS ALT1 TSL 5 BASIC13.03□□□□□ -0.32
RNF4P78317 GOLGA8IP-202ENST00000611635 2100 ntBASIC13.03□□□□□ -0.32
RNF4P78317 ZBTB7B-202ENST00000368426 3594 ntAPPRIS P3 TSL 1 (best) BASIC13.03□□□□□ -0.32
RNF4P78317 ANO6-202ENST00000423947 5504 ntAPPRIS ALT2 TSL 1 (best) BASIC13.03□□□□□ -0.32
Retrieved 100 of 98,524 protein–RNA pairs in 66.4 ms