Protein–RNA interactions for Protein: P06340

HLA-DOA, HLA class II histocompatibility antigen, DO alpha chain, humanhuman

Predictions only

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOAP06340 APBB3-201ENST00000354402 1810 ntTSL 5 BASIC16.49■□□□□ 0.23
HLA-DOAP06340 ANKRD42-201ENST00000260047 2514 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
HLA-DOAP06340 DMPK-202ENST00000343373 3227 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
HLA-DOAP06340 GOLGA8VP-201ENST00000559009 1798 ntBASIC16.49■□□□□ 0.23
HLA-DOAP06340 ARFIP1-203ENST00000405727 1601 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
HLA-DOAP06340 ZFPM2-201ENST00000407775 4700 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
HLA-DOAP06340 C1orf159-202ENST00000379320 2324 ntAPPRIS ALT2 TSL 2 BASIC16.48■□□□□ 0.23
HLA-DOAP06340 MAGEH1-201ENST00000342972 1462 ntAPPRIS P1 BASIC16.48■□□□□ 0.23
HLA-DOAP06340 SALL3-201ENST00000536229 3997 ntTSL 3 BASIC16.48■□□□□ 0.23
HLA-DOAP06340 C12orf76-207ENST00000549724 1302 ntTSL 5 BASIC16.48■□□□□ 0.23
HLA-DOAP06340 PAPOLA-201ENST00000216277 4519 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
HLA-DOAP06340 PPP1R21-201ENST00000281394 3137 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
HLA-DOAP06340 IL3RA-201ENST00000331035 1706 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
HLA-DOAP06340 RAB11FIP1-201ENST00000287263 6253 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
HLA-DOAP06340 GRSF1-201ENST00000254799 6666 ntAPPRIS P1 TSL 5 BASIC16.48■□□□□ 0.23
HLA-DOAP06340 GAS2L2-203ENST00000618498 2655 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
HLA-DOAP06340 AXL-201ENST00000301178 4737 ntAPPRIS P4 TSL 1 (best) BASIC16.48■□□□□ 0.23
HLA-DOAP06340 CNKSR2-203ENST00000425654 5668 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
HLA-DOAP06340 PODN-207ENST00000618387 3065 ntAPPRIS ALT2 TSL 2 BASIC16.48■□□□□ 0.23
HLA-DOAP06340 BORCS8-202ENST00000462790 1429 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
HLA-DOAP06340 SS18-201ENST00000269137 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC16.48■□□□□ 0.23
HLA-DOAP06340 PRAMEF25-202ENST00000619661 1840 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
HLA-DOAP06340 BCAR1-207ENST00000538440 3192 ntAPPRIS ALT2 TSL 2 BASIC16.48■□□□□ 0.23
HLA-DOAP06340 UBA1-201ENST00000335972 3559 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
HLA-DOAP06340 OBSCN-AS1-201ENST00000295012 889 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
HLA-DOAP06340 EPPIN-201ENST00000336443 1217 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
HLA-DOAP06340 UPK1A-202ENST00000379013 1016 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
HLA-DOAP06340 SEPT7-AS1-201ENST00000412856 587 ntTSL 4 BASIC16.48■□□□□ 0.23
HLA-DOAP06340 Z97652.1-201ENST00000415176 329 ntTSL 5 BASIC16.48■□□□□ 0.23
HLA-DOAP06340 Metazoa_SRP.100-201ENST00000447610 282 ntBASIC16.48■□□□□ 0.23
HLA-DOAP06340 RN7SL396P-201ENST00000471086 295 ntBASIC16.48■□□□□ 0.23
HLA-DOAP06340 AC026410.1-201ENST00000507366 1101 ntBASIC16.48■□□□□ 0.23
HLA-DOAP06340 ZNF268-210ENST00000541211 781 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
HLA-DOAP06340 AC016266.1-201ENST00000557558 729 ntTSL 3 BASIC16.48■□□□□ 0.23
HLA-DOAP06340 MT2A-202ENST00000561491 581 ntTSL 2 BASIC16.48■□□□□ 0.23
HLA-DOAP06340 CES1P2-201ENST00000566467 1242 ntBASIC16.48■□□□□ 0.23
HLA-DOAP06340 AC005323.2-202ENST00000581304 493 ntTSL 3 BASIC16.48■□□□□ 0.23
HLA-DOAP06340 GARS-210ENST00000627489 324 ntTSL 4 BASIC16.48■□□□□ 0.23
HLA-DOAP06340 ARID3B-206ENST00000622429 4243 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
HLA-DOAP06340 EPS8L2-223ENST00000533256 3266 ntAPPRIS P2 TSL 5 BASIC16.48■□□□□ 0.23
HLA-DOAP06340 ZNF618-201ENST00000288466 9109 ntAPPRIS P3 TSL 2 BASIC16.48■□□□□ 0.23
HLA-DOAP06340 SLC22A15-202ENST00000369503 4720 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
HLA-DOAP06340 HSPA7-201ENST00000445535 1927 ntBASIC16.48■□□□□ 0.23
HLA-DOAP06340 FHOD3-201ENST00000257209 4967 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
HLA-DOAP06340 GGACT-201ENST00000376250 2804 ntAPPRIS P1 TSL 3 BASIC16.48■□□□□ 0.23
HLA-DOAP06340 CAMKV-202ENST00000463537 2818 ntTSL 5 BASIC16.48■□□□□ 0.23
HLA-DOAP06340 AC152010.1-201ENST00000415779 2006 ntBASIC16.48■□□□□ 0.23
HLA-DOAP06340 KIR2DS4-201ENST00000339924 1608 ntAPPRIS P5 TSL 1 (best) BASIC16.48■□□□□ 0.23
HLA-DOAP06340 GFI1B-207ENST00000636137 1870 ntTSL 5 BASIC16.48■□□□□ 0.23
HLA-DOAP06340 SYNRG-222ENST00000614941 3406 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
HLA-DOAP06340 KCNT1-211ENST00000491806 3678 ntAPPRIS ALT2 TSL 5 BASIC16.48■□□□□ 0.23
HLA-DOAP06340 MLXIPL-201ENST00000313375 3278 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
HLA-DOAP06340 MLXIPL-206ENST00000434326 3252 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
HLA-DOAP06340 ARID3B-201ENST00000346246 4271 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
HLA-DOAP06340 AC016397.2-201ENST00000624848 1985 ntBASIC16.47■□□□□ 0.23
HLA-DOAP06340 KNDC1-201ENST00000304613 6793 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
HLA-DOAP06340 USP25-201ENST00000285679 3973 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
HLA-DOAP06340 CLEC18A-201ENST00000288040 2155 ntAPPRIS P2 TSL 1 (best) BASIC16.47■□□□□ 0.23
HLA-DOAP06340 TKT-201ENST00000296289 1931 ntTSL 5 BASIC16.47■□□□□ 0.23
HLA-DOAP06340 FTSJ1-203ENST00000396894 1669 ntTSL 2 BASIC16.47■□□□□ 0.23
HLA-DOAP06340 AC090643.2-201ENST00000623442 2029 ntBASIC16.47■□□□□ 0.23
HLA-DOAP06340 G0S2-201ENST00000367029 866 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
HLA-DOAP06340 POLR2H-203ENST00000430783 1159 ntTSL 2 BASIC16.47■□□□□ 0.23
HLA-DOAP06340 SPRY4-AS1-203ENST00000443800 566 ntTSL 3 BASIC16.47■□□□□ 0.23
HLA-DOAP06340 CYB561D1-207ENST00000527072 892 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
HLA-DOAP06340 PIGT-208ENST00000545755 1158 ntTSL 5 BASIC16.47■□□□□ 0.23
HLA-DOAP06340 DUXAP9-201ENST00000547220 665 ntTSL 3 BASIC16.47■□□□□ 0.23
HLA-DOAP06340 ORMDL2-205ENST00000552672 760 ntTSL 2 BASIC16.47■□□□□ 0.23
HLA-DOAP06340 FOXN3-AS2-201ENST00000554071 1262 ntBASIC16.47■□□□□ 0.23
HLA-DOAP06340 AC012379.2-201ENST00000560237 765 ntTSL 2 BASIC16.47■□□□□ 0.23
HLA-DOAP06340 RN7SL556P-201ENST00000582856 298 ntBASIC16.47■□□□□ 0.23
HLA-DOAP06340 ATF7-212ENST00000591397 860 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
HLA-DOAP06340 COQ4-204ENST00000608951 781 ntTSL 2 BASIC16.47■□□□□ 0.23
HLA-DOAP06340 SLC12A5-209ENST00000616201 2955 ntTSL 5 BASIC16.47■□□□□ 0.23
HLA-DOAP06340 FO393412.1-201ENST00000619841 382 ntBASIC16.47■□□□□ 0.23
HLA-DOAP06340 PFDN5-220ENST00000628881 231 ntTSL 3 BASIC16.47■□□□□ 0.23
HLA-DOAP06340 SPTLC2-201ENST00000216484 8170 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
HLA-DOAP06340 NAA60-202ENST00000407558 2735 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
HLA-DOAP06340 CNBP-203ENST00000446936 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC16.47■□□□□ 0.23
HLA-DOAP06340 CNBP-204ENST00000451728 1641 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
HLA-DOAP06340 ELOA2-202ENST00000620522 1641 ntAPPRIS ALT2 TSL 5 BASIC16.47■□□□□ 0.23
HLA-DOAP06340 SH3D21-205ENST00000505871 2205 ntTSL 2 BASIC16.47■□□□□ 0.23
HLA-DOAP06340 C9orf3-202ENST00000297979 2820 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
HLA-DOAP06340 HTR3E-205ENST00000436361 1371 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
HLA-DOAP06340 FAM90A21P-201ENST00000510875 1396 ntBASIC16.47■□□□□ 0.23
HLA-DOAP06340 FAM90A15P-201ENST00000514465 1395 ntBASIC16.47■□□□□ 0.23
HLA-DOAP06340 FAM90A6P-201ENST00000515148 1394 ntBASIC16.47■□□□□ 0.23
HLA-DOAP06340 FAM90A16P-201ENST00000526662 1395 ntBASIC16.47■□□□□ 0.23
HLA-DOAP06340 FAM90A9P-201ENST00000527940 1395 ntBASIC16.47■□□□□ 0.23
HLA-DOAP06340 FAM90A5P-201ENST00000528738 1395 ntBASIC16.47■□□□□ 0.23
HLA-DOAP06340 FAM90A14P-201ENST00000530386 1395 ntBASIC16.47■□□□□ 0.23
HLA-DOAP06340 FAM90A13P-201ENST00000534703 1395 ntBASIC16.47■□□□□ 0.23
HLA-DOAP06340 DTNB-228ENST00000496972 2328 ntTSL 2 BASIC16.47■□□□□ 0.23
HLA-DOAP06340 TBCD-202ENST00000539345 3975 ntTSL 5 BASIC16.47■□□□□ 0.23
HLA-DOAP06340 TNN-203ENST00000622870 3719 ntTSL 5 BASIC16.47■□□□□ 0.23
HLA-DOAP06340 FARP2-201ENST00000264042 4051 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
HLA-DOAP06340 SLC26A8-201ENST00000355574 3463 ntAPPRIS P1 TSL 2 BASIC16.47■□□□□ 0.23
HLA-DOAP06340 RASA3-201ENST00000334062 4191 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
HLA-DOAP06340 PRSS30P-201ENST00000390681 2881 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
HLA-DOAP06340 RTEL1-203ENST00000360203 4623 ntAPPRIS P1 TSL 5 BASIC16.47■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 63.1 ms