Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 PPT2-EGFL8-202ENST00000422437 4181 ntAPPRIS P5 TSL 5 BASIC12.07□□□□□ -0.48
SDCBPO00560 PRR12-201ENST00000418929 6955 ntAPPRIS P2 TSL 5 BASIC12.06□□□□□ -0.48
SDCBPO00560 CAMKK2-204ENST00000392473 2967 ntAPPRIS ALT2 TSL 1 (best) BASIC12.06□□□□□ -0.48
SDCBPO00560 TLR6-202ENST00000436693 5880 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
SDCBPO00560 SECISBP2-202ENST00000375807 3462 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
SDCBPO00560 COL9A1-204ENST00000370496 1372 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
SDCBPO00560 PTCHD3-201ENST00000438700 2529 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
SDCBPO00560 PDE2A-218ENST00000540345 3027 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
SDCBPO00560 CIART-201ENST00000290363 1746 ntAPPRIS P3 TSL 1 (best) BASIC12.06□□□□□ -0.48
SDCBPO00560 AC105345.1-202ENST00000382488 3204 ntTSL 2 BASIC12.06□□□□□ -0.48
SDCBPO00560 AL031719.1-201ENST00000623365 2587 ntBASIC12.06□□□□□ -0.48
SDCBPO00560 ADAM12-202ENST00000368679 7938 ntAPPRIS P4 TSL 1 (best) BASIC12.06□□□□□ -0.48
SDCBPO00560 LILRB2-202ENST00000391746 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC12.06□□□□□ -0.48
SDCBPO00560 FAM76A-203ENST00000373949 2273 ntTSL 2 BASIC12.06□□□□□ -0.48
SDCBPO00560 PAIP2-202ENST00000394795 2297 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
SDCBPO00560 LINC02048-201ENST00000440556 1771 ntTSL 5 BASIC12.06□□□□□ -0.48
SDCBPO00560 KAT7-204ENST00000454930 1774 ntTSL 2 BASIC12.06□□□□□ -0.48
SDCBPO00560 LRIF1-202ENST00000485275 1796 ntAPPRIS ALT2 TSL 2 BASIC12.06□□□□□ -0.48
SDCBPO00560 LST1-202ENST00000303757 604 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
SDCBPO00560 CDK2-202ENST00000354056 1260 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
SDCBPO00560 TPM2-202ENST00000360958 1189 ntAPPRIS P5 TSL 1 (best) BASIC12.06□□□□□ -0.48
SDCBPO00560 CMC4-201ENST00000369479 864 ntAPPRIS P1 TSL 3 BASIC12.06□□□□□ -0.48
SDCBPO00560 MTHFSD-202ENST00000381214 1210 ntAPPRIS ALT2 TSL 1 (best) BASIC12.06□□□□□ -0.48
SDCBPO00560 BOLA2P3-201ENST00000404566 256 ntBASIC12.06□□□□□ -0.48
SDCBPO00560 AL035633.1-201ENST00000406139 838 ntBASIC12.06□□□□□ -0.48
SDCBPO00560 PSORS1C3-201ENST00000412143 593 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
SDCBPO00560 NREP-204ENST00000419114 704 ntAPPRIS P1 TSL 2 BASIC12.06□□□□□ -0.48
SDCBPO00560 U82695.1-202ENST00000428676 700 ntTSL 2 BASIC12.06□□□□□ -0.48
SDCBPO00560 AC234783.1-201ENST00000441761 496 ntBASIC12.06□□□□□ -0.48
SDCBPO00560 GLIS3-AS1-201ENST00000451340 734 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
SDCBPO00560 CICP12-201ENST00000455801 843 ntBASIC12.06□□□□□ -0.48
SDCBPO00560 CEP57L1-208ENST00000519095 908 ntTSL 3 BASIC12.06□□□□□ -0.48
SDCBPO00560 RMDN1-212ENST00000519966 1164 ntTSL 2 BASIC12.06□□□□□ -0.48
SDCBPO00560 AP001007.1-201ENST00000526796 645 ntTSL 2 BASIC12.06□□□□□ -0.48
SDCBPO00560 CR383656.12-201ENST00000549567 513 ntBASIC12.06□□□□□ -0.48
SDCBPO00560 AC090502.1-201ENST00000549905 748 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
SDCBPO00560 AC090502.1-204ENST00000551210 469 ntTSL 2 BASIC12.06□□□□□ -0.48
SDCBPO00560 AC108134.4-201ENST00000570700 302 ntTSL 3 BASIC12.06□□□□□ -0.48
SDCBPO00560 APOC4-201ENST00000591600 348 ntTSL 3 BASIC12.06□□□□□ -0.48
SDCBPO00560 AL358472.3-201ENST00000608147 415 ntBASIC12.06□□□□□ -0.48
SDCBPO00560 AC012645.4-201ENST00000610691 1061 ntBASIC12.06□□□□□ -0.48
SDCBPO00560 LINC01002-220ENST00000632790 449 ntTSL 5 BASIC12.06□□□□□ -0.48
SDCBPO00560 CPLX2-201ENST00000359546 5023 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
SDCBPO00560 HERC5-201ENST00000264350 3513 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
SDCBPO00560 RPL13-204ENST00000452368 1455 ntTSL 2 BASIC12.06□□□□□ -0.48
SDCBPO00560 PGAP2-203ENST00000396986 1837 ntTSL 2 BASIC12.06□□□□□ -0.48
SDCBPO00560 DDC-214ENST00000622873 1839 ntTSL 3 BASIC12.06□□□□□ -0.48
SDCBPO00560 PRAME-202ENST00000398743 2196 ntAPPRIS P2 TSL 1 (best) BASIC12.06□□□□□ -0.48
SDCBPO00560 KIFC3-211ENST00000562903 3221 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
SDCBPO00560 NCOR2-208ENST00000429285 8475 ntAPPRIS ALT2 TSL 1 (best) BASIC12.06□□□□□ -0.48
SDCBPO00560 ACIN1-204ENST00000397341 2738 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
SDCBPO00560 PLXNB1-201ENST00000296440 7143 ntAPPRIS P2 TSL 1 (best) BASIC12.06□□□□□ -0.48
SDCBPO00560 ADAMTS5-201ENST00000284987 9056 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
SDCBPO00560 OGFOD1-209ENST00000568397 1681 ntTSL 5 BASIC12.06□□□□□ -0.48
SDCBPO00560 TRAK1-210ENST00000613405 4672 ntTSL 2 BASIC12.06□□□□□ -0.48
SDCBPO00560 RC3H2-205ENST00000423239 3623 ntTSL 5 BASIC12.06□□□□□ -0.48
SDCBPO00560 AMDHD2-202ENST00000302956 3273 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
SDCBPO00560 KIF3A-201ENST00000378735 3266 ntAPPRIS ALT1 TSL 1 (best) BASIC12.06□□□□□ -0.48
SDCBPO00560 CDC20B-203ENST00000381375 2591 ntAPPRIS ALT1 TSL 1 (best) BASIC12.06□□□□□ -0.48
SDCBPO00560 CD48-203ENST00000613788 1500 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
SDCBPO00560 AAR2-201ENST00000320849 2430 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
SDCBPO00560 AP000437.1-201ENST00000624057 2085 ntBASIC12.06□□□□□ -0.48
SDCBPO00560 TMEM164-203ENST00000372072 4975 ntAPPRIS ALT2 TSL 5 BASIC12.06□□□□□ -0.48
SDCBPO00560 AP1M2-201ENST00000250244 1749 ntAPPRIS P3 TSL 1 (best) BASIC12.06□□□□□ -0.48
SDCBPO00560 ADM2-202ENST00000395738 4276 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
SDCBPO00560 SLC7A7-201ENST00000285850 2263 ntAPPRIS P1 TSL 5 BASIC12.06□□□□□ -0.48
SDCBPO00560 ZMYND15-206ENST00000592813 2274 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
SDCBPO00560 PTPN5-205ENST00000477854 2826 ntTSL 5 BASIC12.06□□□□□ -0.48
SDCBPO00560 CARHSP1-220ENST00000619881 2849 ntAPPRIS P1 TSL 3 BASIC12.06□□□□□ -0.48
SDCBPO00560 STAG3-206ENST00000426455 4450 ntAPPRIS P3 TSL 1 (best) BASIC12.05□□□□□ -0.48
SDCBPO00560 ERAL1-201ENST00000254928 1925 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
SDCBPO00560 SGK2-203ENST00000373092 1906 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
SDCBPO00560 GUCY1B3-205ENST00000505764 2456 ntTSL 2 BASIC12.05□□□□□ -0.48
SDCBPO00560 FCHSD1-209ENST00000522783 2477 ntTSL 5 BASIC12.05□□□□□ -0.48
SDCBPO00560 NFATC1-203ENST00000329101 4595 ntAPPRIS ALT2 TSL 1 (best) BASIC12.05□□□□□ -0.48
SDCBPO00560 NFATC1-204ENST00000397790 3453 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
SDCBPO00560 CAP2-206ENST00000489374 1430 ntTSL 2 BASIC12.05□□□□□ -0.48
SDCBPO00560 NEK9-201ENST00000238616 8310 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
SDCBPO00560 AC141928.1-201ENST00000511928 4525 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
SDCBPO00560 OPRL1-202ENST00000349451 3369 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
SDCBPO00560 SEC14L5-201ENST00000251170 6459 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
SDCBPO00560 RNF220-203ENST00000361799 3009 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
SDCBPO00560 RNF220-204ENST00000372247 3010 ntAPPRIS P1 TSL 5 BASIC12.05□□□□□ -0.48
SDCBPO00560 ATE1-208ENST00000540606 5165 ntTSL 2 BASIC12.05□□□□□ -0.48
SDCBPO00560 RPF1-202ENST00000370656 724 ntTSL 2 BASIC12.05□□□□□ -0.48
SDCBPO00560 MAPK15-203ENST00000395108 765 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
SDCBPO00560 USB1-202ENST00000423271 1217 ntTSL 2 BASIC12.05□□□□□ -0.48
SDCBPO00560 AC136604.1-202ENST00000425471 771 ntBASIC12.05□□□□□ -0.48
SDCBPO00560 RGS5-214ENST00000429865 754 ntTSL 3 BASIC12.05□□□□□ -0.48
SDCBPO00560 AK2P2-201ENST00000439142 405 ntBASIC12.05□□□□□ -0.48
SDCBPO00560 AC017116.1-201ENST00000445938 708 ntTSL 3 BASIC12.05□□□□□ -0.48
SDCBPO00560 HOMER2P2-201ENST00000451621 847 ntBASIC12.05□□□□□ -0.48
SDCBPO00560 CROCCP4-201ENST00000457096 498 ntBASIC12.05□□□□□ -0.48
SDCBPO00560 HOXC-AS3-201ENST00000509870 544 ntTSL 4 BASIC12.05□□□□□ -0.48
SDCBPO00560 IGHVIII-5-2-201ENST00000522505 261 ntBASIC12.05□□□□□ -0.48
SDCBPO00560 PAFAH1B3-202ENST00000538771 1098 ntAPPRIS P1 TSL 2 BASIC12.05□□□□□ -0.48
SDCBPO00560 ORAOV1-211ENST00000542341 775 ntTSL 2 BASIC12.05□□□□□ -0.48
SDCBPO00560 MRPL52-216ENST00000557221 922 ntTSL 2 BASIC12.05□□□□□ -0.48
SDCBPO00560 ORC6-206ENST00000568364 888 ntTSL 5 BASIC12.05□□□□□ -0.48
SDCBPO00560 MIR22HG-212ENST00000577164 931 ntTSL 4 BASIC12.05□□□□□ -0.48
Retrieved 100 of 98,524 protein–RNA pairs in 40.5 ms