Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 SPOCK3-218ENST00000511531 2908 ntAPPRIS ALT2 TSL 5 BASIC14.04□□□□□ -0.16
TRIM39Q9HCM9 POLD4-201ENST00000312419 918 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
TRIM39Q9HCM9 RPP40-201ENST00000319533 1088 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
TRIM39Q9HCM9 SLC25A26-201ENST00000336733 1023 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
TRIM39Q9HCM9 IGHV3-48-201ENST00000390624 432 ntAPPRIS P1 BASIC14.04□□□□□ -0.16
TRIM39Q9HCM9 AL583805.1-201ENST00000391389 531 ntBASIC14.04□□□□□ -0.16
TRIM39Q9HCM9 RPL3-202ENST00000401609 1289 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
TRIM39Q9HCM9 C1QA-202ENST00000402322 976 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
TRIM39Q9HCM9 Z82188.2-201ENST00000419128 630 ntTSL 5 BASIC14.04□□□□□ -0.16
TRIM39Q9HCM9 SLC5A4-AS1-201ENST00000434942 876 ntTSL 3 BASIC14.04□□□□□ -0.16
TRIM39Q9HCM9 SGO1-AS1-201ENST00000441442 499 ntTSL 4 BASIC14.04□□□□□ -0.16
TRIM39Q9HCM9 CDYL-205ENST00000449732 2139 ntTSL 2 BASIC14.04□□□□□ -0.16
TRIM39Q9HCM9 CEP164P1-201ENST00000455142 418 ntBASIC14.04□□□□□ -0.16
TRIM39Q9HCM9 LRRC75A-AS1-209ENST00000481027 1016 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
TRIM39Q9HCM9 PPFIBP1-204ENST00000535047 875 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
TRIM39Q9HCM9 ERH-203ENST00000557016 1124 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
TRIM39Q9HCM9 ERVK13-1-204ENST00000566343 567 ntTSL 4 BASIC14.04□□□□□ -0.16
TRIM39Q9HCM9 AC068152.1-201ENST00000575930 685 ntTSL 5 BASIC14.04□□□□□ -0.16
TRIM39Q9HCM9 MIR3677-201ENST00000578964 60 ntBASIC14.04□□□□□ -0.16
TRIM39Q9HCM9 LRRC75A-AS1-226ENST00000582911 879 ntTSL 5 BASIC14.04□□□□□ -0.16
TRIM39Q9HCM9 AL133499.1-201ENST00000596207 608 ntBASIC14.04□□□□□ -0.16
TRIM39Q9HCM9 SIGLEC18P-201ENST00000602271 909 ntBASIC14.04□□□□□ -0.16
TRIM39Q9HCM9 FXYD6-FXYD2-202ENST00000614497 634 ntAPPRIS P1 TSL 3 BASIC14.04□□□□□ -0.16
TRIM39Q9HCM9 AP001043.1-205ENST00000623098 1033 ntTSL 5 BASIC14.04□□□□□ -0.16
TRIM39Q9HCM9 PRMT7-202ENST00000441236 2204 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
TRIM39Q9HCM9 IQCE-216ENST00000611775 2289 ntAPPRIS ALT2 TSL 2 BASIC14.04□□□□□ -0.16
TRIM39Q9HCM9 CMBL-201ENST00000296658 2335 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
TRIM39Q9HCM9 NUDT16-202ENST00000521288 6108 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
TRIM39Q9HCM9 PIGC-201ENST00000344529 1447 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
TRIM39Q9HCM9 COL22A1-201ENST00000303045 6346 ntAPPRIS P2 TSL 1 (best) BASIC14.04□□□□□ -0.16
TRIM39Q9HCM9 SETD6-203ENST00000394266 3423 ntTSL 5 BASIC14.04□□□□□ -0.16
TRIM39Q9HCM9 ATAT1-206ENST00000376485 1476 ntAPPRIS ALT1 TSL 5 BASIC14.04□□□□□ -0.16
TRIM39Q9HCM9 FOSB-213ENST00000615753 1468 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
TRIM39Q9HCM9 ZBED1-203ENST00000381223 4510 ntAPPRIS P1 TSL 2 BASIC14.04□□□□□ -0.16
TRIM39Q9HCM9 RTFDC1-203ENST00000395881 1572 ntTSL 2 BASIC14.04□□□□□ -0.16
TRIM39Q9HCM9 MRM2-201ENST00000242257 1601 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
TRIM39Q9HCM9 ILDR1-205ENST00000462014 1612 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
TRIM39Q9HCM9 PDE4C-204ENST00000539010 1699 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
TRIM39Q9HCM9 FUK-202ENST00000378912 3925 ntTSL 2 BASIC14.04□□□□□ -0.16
TRIM39Q9HCM9 ATP8B3-201ENST00000310127 5095 ntAPPRIS P3 TSL 1 (best) BASIC14.04□□□□□ -0.16
TRIM39Q9HCM9 WNT3A-201ENST00000284523 2932 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
TRIM39Q9HCM9 NUMB-216ENST00000555394 3037 ntAPPRIS ALT1 TSL 1 (best) BASIC14.04□□□□□ -0.16
TRIM39Q9HCM9 TMEM245-201ENST00000374586 7980 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
TRIM39Q9HCM9 USP40-208ENST00000450966 5616 ntAPPRIS P2 TSL 1 (best) BASIC14.04□□□□□ -0.16
TRIM39Q9HCM9 MLXIPL-201ENST00000313375 3278 ntAPPRIS P3 TSL 1 (best) BASIC14.03□□□□□ -0.16
TRIM39Q9HCM9 MLXIPL-206ENST00000434326 3252 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
TRIM39Q9HCM9 CPNE2-204ENST00000565874 1976 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
TRIM39Q9HCM9 VRK3-217ENST00000599538 2126 ntAPPRIS P3 TSL 1 (best) BASIC14.03□□□□□ -0.16
TRIM39Q9HCM9 SUSD5-201ENST00000309558 5008 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
TRIM39Q9HCM9 APP-205ENST00000358918 2366 ntTSL 5 BASIC14.03□□□□□ -0.16
TRIM39Q9HCM9 SGK2-201ENST00000341458 2498 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
TRIM39Q9HCM9 TRMT1-217ENST00000592062 2579 ntAPPRIS P3 TSL 5 BASIC14.03□□□□□ -0.16
TRIM39Q9HCM9 Z99774.1-201ENST00000382641 2613 ntTSL 2 BASIC14.03□□□□□ -0.16
TRIM39Q9HCM9 TIGD1-201ENST00000408957 2625 ntAPPRIS P1 BASIC14.03□□□□□ -0.16
TRIM39Q9HCM9 SLC4A5-201ENST00000346834 6233 ntAPPRIS P4 TSL 5 BASIC14.03□□□□□ -0.16
TRIM39Q9HCM9 NUCB1-201ENST00000405315 2668 ntAPPRIS P2 TSL 1 (best) BASIC14.03□□□□□ -0.16
TRIM39Q9HCM9 ACIN1-201ENST00000262710 4935 ntAPPRIS P3 TSL 1 (best) BASIC14.03□□□□□ -0.16
TRIM39Q9HCM9 MPZL1-203ENST00000392121 3421 ntTSL 2 BASIC14.03□□□□□ -0.16
TRIM39Q9HCM9 TMSB10-201ENST00000233143 496 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
TRIM39Q9HCM9 U2AF1L4-201ENST00000292879 729 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
TRIM39Q9HCM9 COX14-201ENST00000317943 708 ntAPPRIS P1 TSL 2 BASIC14.03□□□□□ -0.16
TRIM39Q9HCM9 MIR557-201ENST00000385239 98 ntBASIC14.03□□□□□ -0.16
TRIM39Q9HCM9 RPL13A-201ENST00000391857 1181 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
TRIM39Q9HCM9 AC012506.3-201ENST00000415245 892 ntTSL 3 BASIC14.03□□□□□ -0.16
TRIM39Q9HCM9 MIR4435-2HG-204ENST00000419736 777 ntTSL 3 BASIC14.03□□□□□ -0.16
TRIM39Q9HCM9 AL590617.2-201ENST00000432673 917 ntTSL 3 BASIC14.03□□□□□ -0.16
TRIM39Q9HCM9 RPS27L-203ENST00000439025 970 ntTSL 2 BASIC14.03□□□□□ -0.16
TRIM39Q9HCM9 RCAN1-212ENST00000492600 935 ntTSL 2 BASIC14.03□□□□□ -0.16
TRIM39Q9HCM9 AC074194.1-201ENST00000505025 622 ntTSL 4 BASIC14.03□□□□□ -0.16
TRIM39Q9HCM9 NDRG1-209ENST00000518176 888 ntTSL 2 BASIC14.03□□□□□ -0.16
TRIM39Q9HCM9 IGLV3-15-201ENST00000518356 244 ntBASIC14.03□□□□□ -0.16
TRIM39Q9HCM9 ALG1L13P-204ENST00000523017 765 ntTSL 5 BASIC14.03□□□□□ -0.16
TRIM39Q9HCM9 MESP2-203ENST00000560219 859 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
TRIM39Q9HCM9 AC016044.1-201ENST00000560818 572 ntTSL 4 BASIC14.03□□□□□ -0.16
TRIM39Q9HCM9 SNHG25-202ENST00000582965 278 ntTSL 2 BASIC14.03□□□□□ -0.16
TRIM39Q9HCM9 TMEM205-210ENST00000588560 840 ntAPPRIS P1 TSL 2 BASIC14.03□□□□□ -0.16
TRIM39Q9HCM9 IMPA2-207ENST00000588927 787 ntTSL 5 BASIC14.03□□□□□ -0.16
TRIM39Q9HCM9 CUTA-215ENST00000611509 1199 ntAPPRIS P3 TSL 1 (best) BASIC14.03□□□□□ -0.16
TRIM39Q9HCM9 AC009560.1-201ENST00000620208 434 ntBASIC14.03□□□□□ -0.16
TRIM39Q9HCM9 KRTAP10-4-203ENST00000622352 1244 ntAPPRIS ALT2 TSL 5 BASIC14.03□□□□□ -0.16
TRIM39Q9HCM9 AC068587.10-201ENST00000641210 219 ntBASIC14.03□□□□□ -0.16
TRIM39Q9HCM9 MOGAT2-201ENST00000198801 1404 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
TRIM39Q9HCM9 RHD-209ENST00000568195 1467 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
TRIM39Q9HCM9 IRAK4-212ENST00000551736 1684 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
TRIM39Q9HCM9 NAA15-201ENST00000296543 6222 ntAPPRIS P2 TSL 1 (best) BASIC14.03□□□□□ -0.16
TRIM39Q9HCM9 AC099548.2-204ENST00000481651 2106 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
TRIM39Q9HCM9 SC5D-202ENST00000392789 2258 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
TRIM39Q9HCM9 TGOLN2-204ENST00000409015 2276 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
TRIM39Q9HCM9 HAL-202ENST00000538703 2637 ntTSL 2 BASIC14.03□□□□□ -0.16
TRIM39Q9HCM9 PLA2G3-201ENST00000215885 2697 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
TRIM39Q9HCM9 AC099521.3-201ENST00000624251 2938 ntBASIC14.03□□□□□ -0.16
TRIM39Q9HCM9 RILPL1-202ENST00000376874 3932 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
TRIM39Q9HCM9 ADCY3-202ENST00000405392 4397 ntAPPRIS ALT1 TSL 1 (best) BASIC14.03□□□□□ -0.16
TRIM39Q9HCM9 SHPK-201ENST00000225519 3838 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
TRIM39Q9HCM9 INF2-209ENST00000617571 2956 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
TRIM39Q9HCM9 PKD1P6-NPIPP1-202ENST00000605794 2902 ntTSL 2 BASIC14.02□□□□□ -0.16
TRIM39Q9HCM9 RFX2-222ENST00000592546 2578 ntAPPRIS ALT1 TSL 2 BASIC14.02□□□□□ -0.16
TRIM39Q9HCM9 EDEM3-201ENST00000318130 6898 ntAPPRIS P2 TSL 1 (best) BASIC14.02□□□□□ -0.16
TRIM39Q9HCM9 UMODL1-AS1-201ENST00000329015 2141 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
TRIM39Q9HCM9 CDH1-213ENST00000612417 2068 ntTSL 5 BASIC14.02□□□□□ -0.16
Retrieved 100 of 98,524 protein–RNA pairs in 65.4 ms