Protein–RNA interactions for Protein: Q8N3P4

VPS8, Vacuolar protein sorting-associated protein 8 homolog, humanhuman

Predictions only

Length 1,428 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS8Q8N3P4 AC019118.1-201ENST00000454530 435 ntTSL 3 BASIC21.53■■□□□ 1.04
VPS8Q8N3P4 AC003982.2-201ENST00000536933 365 ntTSL 3 BASIC21.53■■□□□ 1.04
VPS8Q8N3P4 AC073573.1-201ENST00000550908 481 ntTSL 3 BASIC21.53■■□□□ 1.04
VPS8Q8N3P4 MECP2-213ENST00000622433 1071 ntTSL 5 BASIC21.53■■□□□ 1.04
VPS8Q8N3P4 PSMC3IP-201ENST00000253789 1408 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
VPS8Q8N3P4 LIPE-AS1-204ENST00000594624 1448 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
VPS8Q8N3P4 RFESD-201ENST00000311364 2722 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
VPS8Q8N3P4 LTBP3-221ENST00000532932 3327 ntTSL 2 BASIC21.53■■□□□ 1.04
VPS8Q8N3P4 DPY19L2P2-201ENST00000312132 4078 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
VPS8Q8N3P4 MAN2A2-216ENST00000559717 6704 ntAPPRIS P1 TSL 2 BASIC21.52■■□□□ 1.04
VPS8Q8N3P4 RBL1-201ENST00000344359 3225 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
VPS8Q8N3P4 NT5DC4-201ENST00000327581 1767 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
VPS8Q8N3P4 CDYL2-203ENST00000562812 2086 ntAPPRIS ALT2 TSL 5 BASIC21.52■■□□□ 1.04
VPS8Q8N3P4 CDYL2-204ENST00000563890 2086 ntAPPRIS ALT2 TSL 5 BASIC21.52■■□□□ 1.04
VPS8Q8N3P4 CDYL2-205ENST00000566173 2086 ntAPPRIS ALT2 TSL 5 BASIC21.52■■□□□ 1.04
VPS8Q8N3P4 F2-205ENST00000530231 1849 ntTSL 5 BASIC21.52■■□□□ 1.04
VPS8Q8N3P4 CDC20B-202ENST00000322374 1679 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
VPS8Q8N3P4 PHF10-206ENST00000621772 1651 ntAPPRIS ALT2 TSL 1 (best) BASIC21.52■■□□□ 1.04
VPS8Q8N3P4 MAP2K7-203ENST00000397983 3396 ntAPPRIS ALT1 TSL 1 (best) BASIC21.52■■□□□ 1.04
VPS8Q8N3P4 RTN3-205ENST00000356000 2645 ntTSL 2 BASIC21.52■■□□□ 1.04
VPS8Q8N3P4 ACBD5-202ENST00000375897 4173 ntAPPRIS ALT2 TSL 2 BASIC21.52■■□□□ 1.04
VPS8Q8N3P4 CTNS-202ENST00000381870 2470 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
VPS8Q8N3P4 PPM1B-204ENST00000378551 3877 ntAPPRIS ALT1 TSL 1 (best) BASIC21.52■■□□□ 1.04
VPS8Q8N3P4 KRT36-202ENST00000393986 1707 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
VPS8Q8N3P4 TMTC2-201ENST00000321196 5681 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
VPS8Q8N3P4 LDHAL6A-201ENST00000280706 2526 ntAPPRIS P1 TSL 2 BASIC21.52■■□□□ 1.04
VPS8Q8N3P4 PPP3R1-201ENST00000234310 3023 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
VPS8Q8N3P4 UPK1A-201ENST00000222275 1223 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
VPS8Q8N3P4 SULT1A1-201ENST00000314752 1162 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
VPS8Q8N3P4 KRT18P4-201ENST00000422599 1288 ntBASIC21.52■■□□□ 1.04
VPS8Q8N3P4 RN7SL351P-201ENST00000469306 248 ntBASIC21.52■■□□□ 1.04
VPS8Q8N3P4 LRRC75A-AS1-214ENST00000487066 763 ntTSL 3 BASIC21.52■■□□□ 1.04
VPS8Q8N3P4 LINC02063-201ENST00000503415 566 ntTSL 4 BASIC21.52■■□□□ 1.04
VPS8Q8N3P4 TMEM126A-203ENST00000528105 656 ntTSL 2 BASIC21.52■■□□□ 1.04
VPS8Q8N3P4 BID-209ENST00000551952 700 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
VPS8Q8N3P4 RMDN1-201ENST00000406452 3063 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
VPS8Q8N3P4 ARMC7-201ENST00000245543 2126 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
VPS8Q8N3P4 KRT37-201ENST00000225550 1475 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.03
VPS8Q8N3P4 PPP1R3G-201ENST00000405617 4907 ntAPPRIS P1 BASIC21.52■■□□□ 1.03
VPS8Q8N3P4 SDK1-202ENST00000404826 10397 ntAPPRIS P2 TSL 1 (best) BASIC21.52■■□□□ 1.03
VPS8Q8N3P4 SHISA5-206ENST00000426002 1839 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.03
VPS8Q8N3P4 NXF1-201ENST00000294172 2346 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.03
VPS8Q8N3P4 GPSM1-202ENST00000354753 3533 ntAPPRIS ALT2 TSL 5 BASIC21.51■■□□□ 1.03
VPS8Q8N3P4 GABRB3-215ENST00000622697 5876 ntTSL 5 BASIC21.51■■□□□ 1.03
VPS8Q8N3P4 ATF3-202ENST00000341491 2033 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
VPS8Q8N3P4 CCDC86-201ENST00000227520 1893 ntAPPRIS P2 TSL 1 (best) BASIC21.51■■□□□ 1.03
VPS8Q8N3P4 TAF5-201ENST00000369839 3268 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
VPS8Q8N3P4 NIT1-202ENST00000368008 2081 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
VPS8Q8N3P4 ZSCAN5B-202ENST00000586855 2059 ntAPPRIS P1 TSL 5 BASIC21.51■■□□□ 1.03
VPS8Q8N3P4 LINC01285-204ENST00000634601 1947 ntTSL 5 BASIC21.51■■□□□ 1.03
VPS8Q8N3P4 CCNC-210ENST00000520429 2473 ntAPPRIS P2 TSL 1 (best) BASIC21.51■■□□□ 1.03
VPS8Q8N3P4 GFI1B-202ENST00000372122 1797 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
VPS8Q8N3P4 FOXM1-203ENST00000361953 3370 ntAPPRIS ALT1 TSL 1 (best) BASIC21.51■■□□□ 1.03
VPS8Q8N3P4 MEIS2-215ENST00000559561 1442 ntAPPRIS ALT1 TSL 5 BASIC21.51■■□□□ 1.03
VPS8Q8N3P4 NTRK2-207ENST00000376214 5608 ntAPPRIS P3 TSL 5 BASIC21.51■■□□□ 1.03
VPS8Q8N3P4 KRTAP1-3-201ENST00000344363 972 ntAPPRIS P1 BASIC21.51■■□□□ 1.03
VPS8Q8N3P4 NALT1-202ENST00000450304 437 ntTSL 3 BASIC21.51■■□□□ 1.03
VPS8Q8N3P4 AC107463.1-201ENST00000508605 667 ntTSL 3 BASIC21.51■■□□□ 1.03
VPS8Q8N3P4 EIF3K-202ENST00000538434 966 ntTSL 2 BASIC21.51■■□□□ 1.03
VPS8Q8N3P4 RN7SL134P-201ENST00000579756 303 ntBASIC21.51■■□□□ 1.03
VPS8Q8N3P4 AC007998.2-201ENST00000589258 455 ntAPPRIS P1 TSL 3 BASIC21.51■■□□□ 1.03
VPS8Q8N3P4 AC006483.2-201ENST00000609813 515 ntBASIC21.51■■□□□ 1.03
VPS8Q8N3P4 AC006158.1-201ENST00000610661 249 ntBASIC21.51■■□□□ 1.03
VPS8Q8N3P4 AC104333.4-201ENST00000632866 554 ntTSL 3 BASIC21.51■■□□□ 1.03
VPS8Q8N3P4 LINC01744-201ENST00000457698 2042 ntTSL 2 BASIC21.51■■□□□ 1.03
VPS8Q8N3P4 RNASE7-201ENST00000298690 1498 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
VPS8Q8N3P4 ATP6V1C1-205ENST00000521514 1484 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
VPS8Q8N3P4 CRMP1-205ENST00000512574 2764 ntTSL 2 BASIC21.51■■□□□ 1.03
VPS8Q8N3P4 HS3ST3B1-201ENST00000360954 5367 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
VPS8Q8N3P4 IFT172-202ENST00000359466 2207 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
VPS8Q8N3P4 SMIM13-202ENST00000416247 4688 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
VPS8Q8N3P4 KDM4B-211ENST00000611640 5703 ntTSL 5 BASIC21.51■■□□□ 1.03
VPS8Q8N3P4 SIGLEC6-201ENST00000343300 1746 ntAPPRIS ALT2 TSL 1 (best) BASIC21.51■■□□□ 1.03
VPS8Q8N3P4 ASH2L-201ENST00000343823 3090 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
VPS8Q8N3P4 PCDHA1-203ENST00000504120 5263 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
VPS8Q8N3P4 ARID1B-203ENST00000350026 7962 ntAPPRIS P3 TSL 1 (best) BASIC21.5■■□□□ 1.03
VPS8Q8N3P4 PKM-220ENST00000568459 1806 ntAPPRIS ALT1 TSL 1 (best) BASIC21.5■■□□□ 1.03
VPS8Q8N3P4 PER1-201ENST00000317276 4707 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
VPS8Q8N3P4 NKIRAS2-201ENST00000307641 2948 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
VPS8Q8N3P4 NDRG4-217ENST00000562999 2931 ntTSL 5 BASIC21.5■■□□□ 1.03
VPS8Q8N3P4 SRP9-201ENST00000304786 1480 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
VPS8Q8N3P4 EFHD1-207ENST00000611312 1490 ntTSL 5 BASIC21.5■■□□□ 1.03
VPS8Q8N3P4 C20orf141-201ENST00000380589 730 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
VPS8Q8N3P4 CASP8-206ENST00000392258 1060 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
VPS8Q8N3P4 Z97652.1-201ENST00000415176 329 ntTSL 5 BASIC21.5■■□□□ 1.03
VPS8Q8N3P4 AP002856.2-201ENST00000416553 584 ntTSL 3 BASIC21.5■■□□□ 1.03
VPS8Q8N3P4 AL355334.1-201ENST00000417713 215 ntBASIC21.5■■□□□ 1.03
VPS8Q8N3P4 AL008733.1-201ENST00000440516 469 ntTSL 3 BASIC21.5■■□□□ 1.03
VPS8Q8N3P4 LINC00892-203ENST00000454385 686 ntTSL 3 BASIC21.5■■□□□ 1.03
VPS8Q8N3P4 TRPC7-AS1-201ENST00000514459 460 ntTSL 3 BASIC21.5■■□□□ 1.03
VPS8Q8N3P4 CHTF8-204ENST00000518041 567 ntTSL 2 BASIC21.5■■□□□ 1.03
VPS8Q8N3P4 AC103736.1-201ENST00000524410 605 ntTSL 3 BASIC21.5■■□□□ 1.03
VPS8Q8N3P4 PIGCP1-201ENST00000527583 895 ntBASIC21.5■■□□□ 1.03
VPS8Q8N3P4 AC008736.2-201ENST00000587554 516 ntTSL 2 BASIC21.5■■□□□ 1.03
VPS8Q8N3P4 ZNF528-AS1-202ENST00000596746 929 ntTSL 5 BASIC21.5■■□□□ 1.03
VPS8Q8N3P4 AC011451.3-201ENST00000634951 582 ntTSL 3 BASIC21.5■■□□□ 1.03
VPS8Q8N3P4 TTC23L-209ENST00000638320 1185 ntAPPRIS ALT2 TSL 5 BASIC21.5■■□□□ 1.03
VPS8Q8N3P4 PGLYRP2-201ENST00000292609 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC21.5■■□□□ 1.03
VPS8Q8N3P4 ANKLE1-201ENST00000394458 3218 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
VPS8Q8N3P4 ZNF713-202ENST00000429591 4339 ntAPPRIS P2 TSL 5 BASIC21.5■■□□□ 1.03
Retrieved 100 of 98,524 protein–RNA pairs in 52.6 ms