Protein–RNA interactions for Protein: Q709C8

VPS13C, Vacuolar protein sorting-associated protein 13C, humanhuman

Predictions only

Length 3,753 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13CQ709C8 DSN1-204ENST00000426836 2441 ntAPPRIS P3 TSL 2 BASIC11.27□□□□□ -0.61
VPS13CQ709C8 CDC25B-205ENST00000439880 3096 ntAPPRIS ALT2 TSL 1 (best) BASIC11.27□□□□□ -0.61
VPS13CQ709C8 CAMKV-202ENST00000463537 2818 ntTSL 5 BASIC11.27□□□□□ -0.61
VPS13CQ709C8 IL11RA-208ENST00000555003 3008 ntAPPRIS P1 TSL 2 BASIC11.26□□□□□ -0.61
VPS13CQ709C8 UBC-205ENST00000536769 3745 ntAPPRIS P1 BASIC11.26□□□□□ -0.61
VPS13CQ709C8 NTM-202ENST00000374786 3190 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
VPS13CQ709C8 LINC02026-202ENST00000414309 772 ntTSL 3 BASIC11.26□□□□□ -0.61
VPS13CQ709C8 RPSAP16-201ENST00000447583 821 ntBASIC11.26□□□□□ -0.61
VPS13CQ709C8 TPT1P11-201ENST00000458482 498 ntBASIC11.26□□□□□ -0.61
VPS13CQ709C8 TRAPPC4-212ENST00000533058 1209 ntTSL 2 BASIC11.26□□□□□ -0.61
VPS13CQ709C8 AL807742.1-201ENST00000636678 1160 ntTSL 5 BASIC11.26□□□□□ -0.61
VPS13CQ709C8 TOP3B-202ENST00000398793 3107 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
VPS13CQ709C8 USP43-202ENST00000570475 3500 ntAPPRIS ALT2 TSL 1 (best) BASIC11.26□□□□□ -0.61
VPS13CQ709C8 MAFTRR-201ENST00000562921 1859 ntTSL 5 BASIC11.26□□□□□ -0.61
VPS13CQ709C8 PRKN-204ENST00000366896 2514 ntTSL 1 (best) BASIC11.26□□□□□ -0.61
VPS13CQ709C8 ZNF684-203ENST00000372699 2097 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
VPS13CQ709C8 DDC-213ENST00000617822 1809 ntTSL 3 BASIC11.26□□□□□ -0.61
VPS13CQ709C8 COL9A2-202ENST00000372748 2862 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
VPS13CQ709C8 HLA-DQA1-201ENST00000343139 1591 ntAPPRIS P1 BASIC11.26□□□□□ -0.61
VPS13CQ709C8 CNPY4-201ENST00000262932 1502 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
VPS13CQ709C8 EIF3J-AS1-201ENST00000313807 2863 ntTSL 1 (best) BASIC11.26□□□□□ -0.61
VPS13CQ709C8 KRTAP4-6-201ENST00000345847 1055 ntAPPRIS P1 BASIC11.26□□□□□ -0.61
VPS13CQ709C8 SLC2A11-208ENST00000405847 730 ntTSL 2 BASIC11.26□□□□□ -0.61
VPS13CQ709C8 AC007383.2-201ENST00000420509 752 ntTSL 2 BASIC11.26□□□□□ -0.61
VPS13CQ709C8 AC041040.1-201ENST00000425197 460 ntBASIC11.26□□□□□ -0.61
VPS13CQ709C8 AC005042.2-201ENST00000449526 510 ntTSL 4 BASIC11.26□□□□□ -0.61
VPS13CQ709C8 AC078878.2-201ENST00000543451 286 ntTSL 5 BASIC11.26□□□□□ -0.61
VPS13CQ709C8 TLE2-205ENST00000586422 389 ntTSL 5 BASIC11.26□□□□□ -0.61
VPS13CQ709C8 AC018695.2-201ENST00000602789 498 ntTSL 5 BASIC11.26□□□□□ -0.61
VPS13CQ709C8 LINC02498-201ENST00000635390 1065 ntTSL 5 BASIC11.26□□□□□ -0.61
VPS13CQ709C8 EXO5-201ENST00000296380 2217 ntAPPRIS P1 TSL 2 BASIC11.26□□□□□ -0.61
VPS13CQ709C8 NAP1L2-201ENST00000373517 2550 ntAPPRIS P1 BASIC11.26□□□□□ -0.61
VPS13CQ709C8 BIN3-205ENST00000519513 1431 ntTSL 2 BASIC11.26□□□□□ -0.61
VPS13CQ709C8 GAS6-AS2-201ENST00000608651 1952 ntTSL 2 BASIC11.26□□□□□ -0.61
VPS13CQ709C8 MAGEA4-202ENST00000360243 1773 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
VPS13CQ709C8 MAGEA4-203ENST00000370335 1773 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
VPS13CQ709C8 MAGEA4-204ENST00000370340 1773 ntAPPRIS P1 TSL 5 BASIC11.26□□□□□ -0.61
VPS13CQ709C8 HSDL1-201ENST00000219439 3519 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
VPS13CQ709C8 GIT2-201ENST00000320063 2094 ntTSL 5 BASIC11.26□□□□□ -0.61
VPS13CQ709C8 GPR132-203ENST00000539291 2779 ntAPPRIS P3 TSL 2 BASIC11.26□□□□□ -0.61
VPS13CQ709C8 ADORA1-201ENST00000309502 2896 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
VPS13CQ709C8 FMR1-218ENST00000621447 1832 ntTSL 3 BASIC11.26□□□□□ -0.61
VPS13CQ709C8 SGK1-205ENST00000413996 2686 ntTSL 1 (best) BASIC11.26□□□□□ -0.61
VPS13CQ709C8 CNBP-203ENST00000446936 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC11.26□□□□□ -0.61
VPS13CQ709C8 CNBP-204ENST00000451728 1641 ntTSL 1 (best) BASIC11.26□□□□□ -0.61
VPS13CQ709C8 MRPL55-209ENST00000366735 1212 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
VPS13CQ709C8 MIR193A-201ENST00000384882 88 ntBASIC11.26□□□□□ -0.61
VPS13CQ709C8 LRRC75A-AS1-208ENST00000480811 968 ntTSL 2 BASIC11.26□□□□□ -0.61
VPS13CQ709C8 AC104759.1-201ENST00000559109 939 ntBASIC11.26□□□□□ -0.61
VPS13CQ709C8 LINC01002-223ENST00000633179 407 ntTSL 5 BASIC11.26□□□□□ -0.61
VPS13CQ709C8 ZNF114-201ENST00000315849 2206 ntAPPRIS P1 TSL 2 BASIC11.26□□□□□ -0.61
VPS13CQ709C8 TBCD-202ENST00000539345 3975 ntTSL 5 BASIC11.26□□□□□ -0.61
VPS13CQ709C8 PTPA-205ENST00000357197 2653 ntTSL 2 BASIC11.26□□□□□ -0.61
VPS13CQ709C8 ZNF576-203ENST00000525771 2327 ntAPPRIS P1 TSL 2 BASIC11.26□□□□□ -0.61
VPS13CQ709C8 CDK5RAP1-202ENST00000346416 2122 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
VPS13CQ709C8 ANP32B-201ENST00000339399 1463 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
VPS13CQ709C8 GNAO1-201ENST00000262493 3337 ntAPPRIS P5 TSL 1 (best) BASIC11.25□□□□□ -0.61
VPS13CQ709C8 ULK4-203ENST00000420927 1904 ntTSL 1 (best) BASIC11.25□□□□□ -0.61
VPS13CQ709C8 RASGEF1C-206ENST00000522500 2055 ntTSL 2 BASIC11.25□□□□□ -0.61
VPS13CQ709C8 SMAGP-203ENST00000603798 2350 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
VPS13CQ709C8 CHSY3-201ENST00000305031 3850 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
VPS13CQ709C8 NRP2-203ENST00000357785 2926 ntAPPRIS P4 TSL 1 (best) BASIC11.25□□□□□ -0.61
VPS13CQ709C8 NEK11-202ENST00000383366 2914 ntAPPRIS P3 TSL 1 (best) BASIC11.25□□□□□ -0.61
VPS13CQ709C8 IGLJ1-201ENST00000390320 127 ntAPPRIS P1 BASIC11.25□□□□□ -0.61
VPS13CQ709C8 TXLNGY-202ENST00000407724 1000 ntTSL 3 BASIC11.25□□□□□ -0.61
VPS13CQ709C8 HDHD5-AS1-202ENST00000431923 616 ntTSL 1 (best) BASIC11.25□□□□□ -0.61
VPS13CQ709C8 AC004771.1-201ENST00000438266 583 ntTSL 2 BASIC11.25□□□□□ -0.61
VPS13CQ709C8 AC126177.4-201ENST00000547452 731 ntTSL 5 BASIC11.25□□□□□ -0.61
VPS13CQ709C8 SC5D-202ENST00000392789 2258 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
VPS13CQ709C8 DNM3-201ENST00000355305 3280 ntTSL 5 BASIC11.25□□□□□ -0.61
VPS13CQ709C8 SLC7A8-214ENST00000621729 1371 ntTSL 5 BASIC11.25□□□□□ -0.61
VPS13CQ709C8 SNHG28-201ENST00000368102 2501 ntAPPRIS P1 TSL 2 BASIC11.25□□□□□ -0.61
VPS13CQ709C8 TNIP1-214ENST00000522226 2238 ntAPPRIS P3 TSL 2 BASIC11.25□□□□□ -0.61
VPS13CQ709C8 SCAP-206ENST00000428413 3749 ntTSL 5 BASIC11.25□□□□□ -0.61
VPS13CQ709C8 CLIC6-202ENST00000360731 3860 ntAPPRIS ALT2 TSL 1 (best) BASIC11.25□□□□□ -0.61
VPS13CQ709C8 AC116347.1-201ENST00000442824 720 ntBASIC11.25□□□□□ -0.61
VPS13CQ709C8 AL583804.1-201ENST00000448643 810 ntTSL 3 BASIC11.25□□□□□ -0.61
VPS13CQ709C8 AC114812.4-201ENST00000506676 757 ntBASIC11.25□□□□□ -0.61
VPS13CQ709C8 AC009118.3-201ENST00000622896 873 ntBASIC11.25□□□□□ -0.61
VPS13CQ709C8 TPRX1-202ENST00000535759 2059 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
VPS13CQ709C8 KMT5A-202ENST00000402868 3140 ntAPPRIS P2 TSL 1 (best) BASIC11.25□□□□□ -0.61
VPS13CQ709C8 IMPDH1P5-201ENST00000439688 1540 ntBASIC11.25□□□□□ -0.61
VPS13CQ709C8 AC005519.2-201ENST00000554532 1367 ntTSL 4 BASIC11.25□□□□□ -0.61
VPS13CQ709C8 YTHDF2-201ENST00000373812 2925 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
VPS13CQ709C8 CYP1A1-210ENST00000617691 2521 ntTSL 5 BASIC11.25□□□□□ -0.61
VPS13CQ709C8 CCDC142-202ENST00000393965 3406 ntAPPRIS ALT2 TSL 1 (best) BASIC11.25□□□□□ -0.61
VPS13CQ709C8 ALPL-206ENST00000539907 2241 ntTSL 2 BASIC11.25□□□□□ -0.61
VPS13CQ709C8 EFHC2-202ENST00000420999 2464 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
VPS13CQ709C8 CD1A-201ENST00000289429 2096 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
VPS13CQ709C8 GALNT10-203ENST00000425427 4344 ntTSL 2 BASIC11.25□□□□□ -0.61
VPS13CQ709C8 POMT1-204ENST00000402686 3038 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
VPS13CQ709C8 CETP-201ENST00000200676 1791 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
VPS13CQ709C8 PML-203ENST00000354026 2885 ntAPPRIS ALT2 TSL 1 (best) BASIC11.25□□□□□ -0.61
VPS13CQ709C8 DCAF5-209ENST00000557386 2883 ntAPPRIS ALT1 TSL 1 (best) BASIC11.25□□□□□ -0.61
VPS13CQ709C8 SPHK2-206ENST00000598088 2866 ntAPPRIS P3 TSL 1 (best) BASIC11.25□□□□□ -0.61
VPS13CQ709C8 RNF181-201ENST00000306368 569 ntAPPRIS P2 TSL 1 (best) BASIC11.25□□□□□ -0.61
VPS13CQ709C8 IGHV3-11-201ENST00000390601 473 ntAPPRIS P1 BASIC11.25□□□□□ -0.61
VPS13CQ709C8 LINC00544-201ENST00000400540 1031 ntTSL 5 BASIC11.25□□□□□ -0.61
VPS13CQ709C8 RN7SL2-201ENST00000490232 300 ntBASIC11.25□□□□□ -0.61
VPS13CQ709C8 RN7SL4P-201ENST00000584058 295 ntBASIC11.25□□□□□ -0.61
Retrieved 100 of 98,524 protein–RNA pairs in 51.8 ms