Protein–RNA interactions for Protein: P67936

TPM4, Tropomyosin alpha-4 chain, humanhuman

Predictions only

Length 248 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM4P67936 MIR4683-201ENST00000579659 81 ntBASIC15.89■□□□□ 0.13
TPM4P67936 CTBP2P3-201ENST00000585629 1255 ntBASIC15.89■□□□□ 0.13
TPM4P67936 ECM1P1-201ENST00000604092 1279 ntBASIC15.89■□□□□ 0.13
TPM4P67936 HEXA-201ENST00000268097 5252 ntAPPRIS P2 TSL 1 (best) BASIC15.89■□□□□ 0.13
TPM4P67936 TMEM45A-202ENST00000403410 1910 ntTSL 5 BASIC15.89■□□□□ 0.13
TPM4P67936 PML-210ENST00000563500 4502 ntAPPRIS ALT2 TSL 1 (best) BASIC15.89■□□□□ 0.13
TPM4P67936 ENDOV-207ENST00000518907 2418 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
TPM4P67936 SRD5A1-201ENST00000274192 7132 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
TPM4P67936 NCSTN-201ENST00000294785 2936 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
TPM4P67936 ATAT1-206ENST00000376485 1476 ntAPPRIS ALT1 TSL 5 BASIC15.89■□□□□ 0.13
TPM4P67936 DMAC2-204ENST00000438807 1454 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
TPM4P67936 POLM-201ENST00000242248 2631 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
TPM4P67936 AC005014.1-201ENST00000432006 2976 ntBASIC15.89■□□□□ 0.13
TPM4P67936 SHC1-202ENST00000368445 3472 ntAPPRIS ALT1 TSL 1 (best) BASIC15.89■□□□□ 0.13
TPM4P67936 SPO11-203ENST00000371263 1834 ntAPPRIS P4 TSL 1 (best) BASIC15.89■□□□□ 0.13
TPM4P67936 PPP1R8-202ENST00000311772 2344 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
TPM4P67936 GCOM1-214ENST00000587652 2329 ntAPPRIS ALT2 TSL 2 BASIC15.89■□□□□ 0.13
TPM4P67936 SEMA3F-201ENST00000002829 3802 ntAPPRIS P3 TSL 1 (best) BASIC15.89■□□□□ 0.13
TPM4P67936 PCGF2-202ENST00000611883 2179 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
TPM4P67936 PPFIA4-201ENST00000272198 5045 ntAPPRIS ALT2 TSL 1 (best) BASIC15.89■□□□□ 0.13
TPM4P67936 KANK2-205ENST00000589359 3048 ntAPPRIS ALT2 TSL 5 BASIC15.89■□□□□ 0.13
TPM4P67936 AC006001.3-201ENST00000449307 7092 ntTSL 3 BASIC15.89■□□□□ 0.13
TPM4P67936 SOGA3-207ENST00000481848 11464 ntAPPRIS P5 TSL 5 BASIC15.89■□□□□ 0.13
TPM4P67936 AC073862.5-201ENST00000624129 2027 ntBASIC15.89■□□□□ 0.13
TPM4P67936 SPECC1-206ENST00000395530 8133 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
TPM4P67936 Z98257.2-202ENST00000641138 1548 ntBASIC15.89■□□□□ 0.13
TPM4P67936 GOLGA8IP-201ENST00000340249 1899 ntTSL 2 BASIC15.88■□□□□ 0.13
TPM4P67936 SGCE-202ENST00000415788 1871 ntTSL 2 BASIC15.88■□□□□ 0.13
TPM4P67936 PSG4-203ENST00000433626 1887 ntTSL 2 BASIC15.88■□□□□ 0.13
TPM4P67936 SLC44A3-AS1-215ENST00000634870 5956 ntTSL 5 BASIC15.88■□□□□ 0.13
TPM4P67936 TMEM164-203ENST00000372072 4975 ntAPPRIS ALT2 TSL 5 BASIC15.88■□□□□ 0.13
TPM4P67936 MAGED4B-201ENST00000335504 2578 ntAPPRIS P3 TSL 1 (best) BASIC15.88■□□□□ 0.13
TPM4P67936 LYRM1-203ENST00000412082 1399 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
TPM4P67936 WSB2-202ENST00000441406 1353 ntTSL 2 BASIC15.88■□□□□ 0.13
TPM4P67936 AC010547.4-201ENST00000561754 1378 ntAPPRIS P1 TSL 5 BASIC15.88■□□□□ 0.13
TPM4P67936 RGL4-202ENST00000401461 2420 ntAPPRIS ALT2 TSL 5 BASIC15.88■□□□□ 0.13
TPM4P67936 FOXM1-210ENST00000627656 3487 ntAPPRIS ALT1 TSL 1 (best) BASIC15.88■□□□□ 0.13
TPM4P67936 ZIK1-204ENST00000597850 4181 ntAPPRIS P3 TSL 1 (best) BASIC15.88■□□□□ 0.13
TPM4P67936 CTCFL-208ENST00000432255 2955 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
TPM4P67936 TRIM50-202ENST00000453152 1599 ntAPPRIS P1 TSL 2 BASIC15.88■□□□□ 0.13
TPM4P67936 RNF43-205ENST00000581868 2610 ntTSL 2 BASIC15.88■□□□□ 0.13
TPM4P67936 BRSK1-206ENST00000590333 2977 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
TPM4P67936 EPM2AIP1-201ENST00000322716 8126 ntAPPRIS P1 BASIC15.88■□□□□ 0.13
TPM4P67936 MEAF6-204ENST00000373075 2147 ntAPPRIS P3 TSL 1 (best) BASIC15.88■□□□□ 0.13
TPM4P67936 ATG10-203ENST00000458350 1795 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
TPM4P67936 IL11RA-208ENST00000555003 3008 ntAPPRIS P1 TSL 2 BASIC15.88■□□□□ 0.13
TPM4P67936 LINC00905-203ENST00000588838 1414 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
TPM4P67936 SNRK-201ENST00000296088 5183 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
TPM4P67936 NLRP7-207ENST00000590030 3209 ntAPPRIS ALT2 TSL 1 (best) BASIC15.88■□□□□ 0.13
TPM4P67936 NTSR1-201ENST00000370501 4132 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
TPM4P67936 AC046130.1-201ENST00000501954 2179 ntTSL 5 BASIC15.88■□□□□ 0.13
TPM4P67936 ALOX15B-202ENST00000380183 2739 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
TPM4P67936 NFATC2-207ENST00000610033 2740 ntAPPRIS ALT2 TSL 1 (best) BASIC15.88■□□□□ 0.13
TPM4P67936 NDUFA2-201ENST00000252102 804 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
TPM4P67936 NAT8-201ENST00000272425 947 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
TPM4P67936 FAM169B-201ENST00000332908 579 ntAPPRIS P1 TSL 5 BASIC15.88■□□□□ 0.13
TPM4P67936 MYMK-201ENST00000339996 818 ntAPPRIS P1 TSL 2 BASIC15.88■□□□□ 0.13
TPM4P67936 MBP-203ENST00000359645 1255 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
TPM4P67936 CKS1B-202ENST00000368436 820 ntTSL 2 BASIC15.88■□□□□ 0.13
TPM4P67936 EIF1AX-201ENST00000379593 765 ntTSL 3 BASIC15.88■□□□□ 0.13
TPM4P67936 DBI-203ENST00000393103 599 ntAPPRIS P4 TSL 1 (best) BASIC15.88■□□□□ 0.13
TPM4P67936 AC114730.3-201ENST00000435195 584 ntTSL 5 BASIC15.88■□□□□ 0.13
TPM4P67936 LINC01818-201ENST00000437118 368 ntTSL 2 BASIC15.88■□□□□ 0.13
TPM4P67936 AP002387.1-201ENST00000529369 680 ntTSL 2 BASIC15.88■□□□□ 0.13
TPM4P67936 TDH-203ENST00000531764 1110 ntBASIC15.88■□□□□ 0.13
TPM4P67936 PLEKHB1-206ENST00000535129 1049 ntAPPRIS ALT1 TSL 2 BASIC15.88■□□□□ 0.13
TPM4P67936 AIPL1-204ENST00000570466 1196 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
TPM4P67936 BCAP29-201ENST00000005259 4572 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
TPM4P67936 SEPT12-201ENST00000268231 1469 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
TPM4P67936 SMPDL3A-201ENST00000368440 1851 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
TPM4P67936 HDAC7-209ENST00000427332 3016 ntAPPRIS ALT2 TSL 5 BASIC15.88■□□□□ 0.13
TPM4P67936 CASP6-202ENST00000352981 1347 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
TPM4P67936 CYB5R2-204ENST00000524790 1338 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
TPM4P67936 IDH3G-212ENST00000619865 1339 ntTSL 5 BASIC15.88■□□□□ 0.13
TPM4P67936 ASB3-202ENST00000394717 1734 ntTSL 2 BASIC15.88■□□□□ 0.13
TPM4P67936 SLC4A5-206ENST00000423644 6185 ntAPPRIS ALT2 TSL 5 BASIC15.88■□□□□ 0.13
TPM4P67936 CALCR-203ENST00000394441 1774 ntAPPRIS P3 TSL 1 (best) BASIC15.87■□□□□ 0.13
TPM4P67936 SLC7A8-205ENST00000453702 1752 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
TPM4P67936 TRIM4-201ENST00000349062 3374 ntAPPRIS ALT2 TSL 1 (best) BASIC15.87■□□□□ 0.13
TPM4P67936 POTEE-201ENST00000356920 4159 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
TPM4P67936 FBLN2-207ENST00000492059 4193 ntAPPRIS P4 TSL 2 BASIC15.87■□□□□ 0.13
TPM4P67936 GOLGA6L10-209ENST00000621197 4160 ntAPPRIS ALT2 TSL 5 BASIC15.87■□□□□ 0.13
TPM4P67936 DYSF-203ENST00000409366 6606 ntAPPRIS ALT2 TSL 1 (best) BASIC15.87■□□□□ 0.13
TPM4P67936 DYSF-205ENST00000409651 6636 ntAPPRIS ALT2 TSL 1 (best) BASIC15.87■□□□□ 0.13
TPM4P67936 CYB561-202ENST00000392975 3007 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
TPM4P67936 CEP131-201ENST00000269392 3673 ntAPPRIS ALT2 TSL 1 (best) BASIC15.87■□□□□ 0.13
TPM4P67936 KCNJ10-201ENST00000368089 5528 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
TPM4P67936 CDK20-209ENST00000605159 1860 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
TPM4P67936 OSBPL9-201ENST00000361556 2721 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
TPM4P67936 FOSB-213ENST00000615753 1468 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
TPM4P67936 PDE6D-201ENST00000287600 1175 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
TPM4P67936 AL354893.2-201ENST00000423075 529 ntTSL 5 BASIC15.87■□□□□ 0.13
TPM4P67936 ACTG1P3-201ENST00000431775 1114 ntBASIC15.87■□□□□ 0.13
TPM4P67936 GNB3-202ENST00000435982 1110 ntAPPRIS ALT1 TSL 1 (best) BASIC15.87■□□□□ 0.13
TPM4P67936 ZNF707-203ENST00000442058 562 ntTSL 4 BASIC15.87■□□□□ 0.13
TPM4P67936 AL355864.2-201ENST00000447420 863 ntBASIC15.87■□□□□ 0.13
TPM4P67936 RPL23A-206ENST00000496182 636 ntTSL 3 BASIC15.87■□□□□ 0.13
TPM4P67936 LINC01336-201ENST00000503568 534 ntTSL 4 BASIC15.87■□□□□ 0.13
TPM4P67936 LINC01336-202ENST00000506086 479 ntTSL 5 BASIC15.87■□□□□ 0.13
TPM4P67936 ORAOV1-211ENST00000542341 775 ntTSL 2 BASIC15.87■□□□□ 0.13
Retrieved 100 of 98,524 protein–RNA pairs in 55.9 ms