Protein–RNA interactions for Protein: P49238

CX3CR1, CX3C chemokine receptor 1, humanhuman

Predictions only

Length 355 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CR1P49238 SYK-203ENST00000375751 4936 ntAPPRIS ALT2 TSL 1 (best) BASIC12.46□□□□□ -0.42
CX3CR1P49238 TMEM9-204ENST00000367334 1529 ntAPPRIS P3 TSL 1 (best) BASIC12.46□□□□□ -0.42
CX3CR1P49238 SVOPL-202ENST00000419765 1523 ntAPPRIS P1 TSL 5 BASIC12.46□□□□□ -0.42
CX3CR1P49238 PCGF2-203ENST00000616129 1534 ntTSL 5 BASIC12.46□□□□□ -0.42
CX3CR1P49238 USP39-220ENST00000613444 2161 ntTSL 2 BASIC12.46□□□□□ -0.42
CX3CR1P49238 CES3-201ENST00000303334 3834 ntAPPRIS P3 TSL 1 (best) BASIC12.46□□□□□ -0.42
CX3CR1P49238 CES3-202ENST00000394037 3817 ntAPPRIS ALT1 TSL 1 (best) BASIC12.46□□□□□ -0.42
CX3CR1P49238 EVA1A-202ENST00000393913 1802 ntAPPRIS P2 TSL 1 (best) BASIC12.46□□□□□ -0.42
CX3CR1P49238 ATP2B2-210ENST00000638646 3465 ntTSL 5 BASIC12.46□□□□□ -0.42
CX3CR1P49238 ZNF335-201ENST00000322927 4430 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.42
CX3CR1P49238 AC061965.1-201ENST00000560524 1465 ntBASIC12.46□□□□□ -0.42
CX3CR1P49238 CDK5RAP1-202ENST00000346416 2122 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.42
CX3CR1P49238 KRT17P5-203ENST00000445433 2333 ntTSL 2 BASIC12.45□□□□□ -0.42
CX3CR1P49238 TGFBR3-204ENST00000465892 2908 ntAPPRIS ALT1 TSL 1 (best) BASIC12.45□□□□□ -0.42
CX3CR1P49238 CSPG4P11-201ENST00000560634 4910 ntBASIC12.45□□□□□ -0.42
CX3CR1P49238 LRSAM1-203ENST00000373322 2849 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
CX3CR1P49238 B3GNT5-202ENST00000460419 3368 ntAPPRIS P1 TSL 2 BASIC12.45□□□□□ -0.42
CX3CR1P49238 TNNI1-202ENST00000361379 5413 ntAPPRIS P2 TSL 5 BASIC12.45□□□□□ -0.42
CX3CR1P49238 SLC29A1-201ENST00000371708 2159 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
CX3CR1P49238 MOG-221ENST00000376917 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC12.45□□□□□ -0.42
CX3CR1P49238 ERG-207ENST00000398919 1868 ntAPPRIS ALT1 TSL 1 (best) BASIC12.45□□□□□ -0.42
CX3CR1P49238 RERE-202ENST00000377464 6733 ntAPPRIS ALT2 TSL 5 BASIC12.45□□□□□ -0.42
CX3CR1P49238 ARHGAP10-201ENST00000336498 3299 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
CX3CR1P49238 CD164L2-203ENST00000374030 993 ntAPPRIS ALT1 TSL 5 BASIC12.45□□□□□ -0.42
CX3CR1P49238 PHACTR1-202ENST00000379329 707 ntTSL 2 BASIC12.45□□□□□ -0.42
CX3CR1P49238 LCMT1-202ENST00000380966 989 ntTSL 2 BASIC12.45□□□□□ -0.42
CX3CR1P49238 FOLR1-202ENST00000393676 996 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
CX3CR1P49238 AC103592.1-201ENST00000394513 664 ntBASIC12.45□□□□□ -0.42
CX3CR1P49238 MORN2-204ENST00000409665 648 ntAPPRIS P1 TSL 5 BASIC12.45□□□□□ -0.42
CX3CR1P49238 AL021707.3-201ENST00000418803 527 ntTSL 5 BASIC12.45□□□□□ -0.42
CX3CR1P49238 KRT223P-202ENST00000449164 1292 ntBASIC12.45□□□□□ -0.42
CX3CR1P49238 Z93015.1-201ENST00000451718 390 ntBASIC12.45□□□□□ -0.42
CX3CR1P49238 SCARNA21-201ENST00000517026 139 ntBASIC12.45□□□□□ -0.42
CX3CR1P49238 CACNA2D4-208ENST00000538027 952 ntTSL 5 BASIC12.45□□□□□ -0.42
CX3CR1P49238 AC021054.1-202ENST00000543884 599 ntTSL 3 BASIC12.45□□□□□ -0.42
CX3CR1P49238 AC005730.2-201ENST00000564549 1184 ntBASIC12.45□□□□□ -0.42
CX3CR1P49238 TECR-220ENST00000600083 1204 ntTSL 2 BASIC12.45□□□□□ -0.42
CX3CR1P49238 KLK11-210ENST00000600362 759 ntTSL 3 BASIC12.45□□□□□ -0.42
CX3CR1P49238 DDX5-235ENST00000630471 473 ntTSL 4 BASIC12.45□□□□□ -0.42
CX3CR1P49238 AC092299.1-201ENST00000632679 757 ntBASIC12.45□□□□□ -0.42
CX3CR1P49238 ADPRH-205ENST00000478927 1501 ntAPPRIS P1 TSL 2 BASIC12.45□□□□□ -0.42
CX3CR1P49238 UGP2-207ENST00000467648 2057 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
CX3CR1P49238 RCAN3-207ENST00000538532 2640 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
CX3CR1P49238 TMEM173-201ENST00000330794 1771 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
CX3CR1P49238 STK25-235ENST00000543554 2556 ntTSL 2 BASIC12.45□□□□□ -0.42
CX3CR1P49238 CNTNAP1-201ENST00000264638 5276 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
CX3CR1P49238 PROM2-201ENST00000317620 4728 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
CX3CR1P49238 TAF9-202ENST00000328663 1461 ntAPPRIS P2 TSL 2 BASIC12.45□□□□□ -0.42
CX3CR1P49238 RPS6KA2-204ENST00000481261 2297 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
CX3CR1P49238 DNMT3B-202ENST00000328111 4336 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
CX3CR1P49238 SLC4A1-206ENST00000631130 1433 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
CX3CR1P49238 INVS-201ENST00000262456 2968 ntTSL 5 BASIC12.45□□□□□ -0.42
CX3CR1P49238 REC8-213ENST00000620473 2405 ntAPPRIS P1 TSL 2 BASIC12.45□□□□□ -0.42
CX3CR1P49238 CNP-202ENST00000393892 5217 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
CX3CR1P49238 GBF1-201ENST00000369983 6403 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
CX3CR1P49238 CPPED1-201ENST00000261660 1898 ntTSL 2 BASIC12.44□□□□□ -0.42
CX3CR1P49238 KRT8P29-201ENST00000420409 1371 ntBASIC12.44□□□□□ -0.42
CX3CR1P49238 AATBC-203ENST00000448247 1889 ntTSL 2 BASIC12.44□□□□□ -0.42
CX3CR1P49238 PRPSAP2-216ENST00000536323 1872 ntTSL 2 BASIC12.44□□□□□ -0.42
CX3CR1P49238 PDCD6IPP2-206ENST00000566178 3351 ntTSL 5 BASIC12.44□□□□□ -0.42
CX3CR1P49238 SAMD4A-201ENST00000251091 6565 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
CX3CR1P49238 MAP2K4-201ENST00000353533 3826 ntAPPRIS P3 TSL 1 (best) BASIC12.44□□□□□ -0.42
CX3CR1P49238 INMT-201ENST00000013222 2559 ntAPPRIS P3 TSL 1 (best) BASIC12.44□□□□□ -0.42
CX3CR1P49238 RPP30-202ENST00000371703 2589 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
CX3CR1P49238 PROKR1-201ENST00000303786 4273 ntAPPRIS P1 TSL 5 BASIC12.44□□□□□ -0.42
CX3CR1P49238 RGS22-201ENST00000360863 4296 ntAPPRIS P3 TSL 1 (best) BASIC12.44□□□□□ -0.42
CX3CR1P49238 IRF6-204ENST00000542854 4256 ntTSL 2 BASIC12.44□□□□□ -0.42
CX3CR1P49238 PELP1-202ENST00000436683 3524 ntTSL 2 BASIC12.44□□□□□ -0.42
CX3CR1P49238 TRIM10-204ENST00000449742 3546 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
CX3CR1P49238 SMC6-201ENST00000351948 5173 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
CX3CR1P49238 SPPL2B-209ENST00000613503 3456 ntAPPRIS P4 TSL 1 (best) BASIC12.44□□□□□ -0.42
CX3CR1P49238 AC125611.4-201ENST00000553259 4166 ntTSL 2 BASIC12.44□□□□□ -0.42
CX3CR1P49238 FH-201ENST00000366560 1797 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
CX3CR1P49238 DLGAP1-205ENST00000400150 5332 ntTSL 5 BASIC12.44□□□□□ -0.42
CX3CR1P49238 TAS1R3-201ENST00000339381 3433 ntAPPRIS P1 TSL 2 BASIC12.44□□□□□ -0.42
CX3CR1P49238 WASF3-202ENST00000361042 4823 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
CX3CR1P49238 CCDC187-203ENST00000569961 3158 ntAPPRIS P2 TSL 1 (best) BASIC12.44□□□□□ -0.42
CX3CR1P49238 GSDMA-203ENST00000635792 1546 ntAPPRIS P1 TSL 5 BASIC12.44□□□□□ -0.42
CX3CR1P49238 AC007663.2-201ENST00000506039 2228 ntTSL 2 BASIC12.44□□□□□ -0.42
CX3CR1P49238 FFAR4-201ENST00000371481 3605 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
CX3CR1P49238 ZC2HC1A-201ENST00000263849 3352 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
CX3CR1P49238 HOXA3-207ENST00000612286 3396 ntAPPRIS P1 TSL 2 BASIC12.44□□□□□ -0.42
CX3CR1P49238 USP47-202ENST00000339865 7775 ntTSL 2 BASIC12.44□□□□□ -0.42
CX3CR1P49238 HEBP1-201ENST00000014930 1173 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
CX3CR1P49238 MRPL34-201ENST00000252602 968 ntAPPRIS P2 TSL 1 (best) BASIC12.44□□□□□ -0.42
CX3CR1P49238 SST-201ENST00000287641 618 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
CX3CR1P49238 SF3B5-201ENST00000367569 693 ntAPPRIS P1 BASIC12.44□□□□□ -0.42
CX3CR1P49238 UBE4B-203ENST00000377153 1273 ntTSL 3 BASIC12.44□□□□□ -0.42
CX3CR1P49238 AC092580.1-201ENST00000433998 658 ntBASIC12.44□□□□□ -0.42
CX3CR1P49238 AC022210.1-201ENST00000449856 793 ntBASIC12.44□□□□□ -0.42
CX3CR1P49238 RNMTL1P1-201ENST00000454103 560 ntBASIC12.44□□□□□ -0.42
CX3CR1P49238 AL354710.2-201ENST00000468244 550 ntTSL 4 BASIC12.44□□□□□ -0.42
CX3CR1P49238 ATP6V0CP2-201ENST00000469409 207 ntBASIC12.44□□□□□ -0.42
CX3CR1P49238 LCN10-203ENST00000474369 564 ntAPPRIS ALT2 TSL 1 (best) BASIC12.44□□□□□ -0.42
CX3CR1P49238 RPL18P13-201ENST00000478088 569 ntBASIC12.44□□□□□ -0.42
CX3CR1P49238 DNAJC19-209ENST00000491873 769 ntTSL 2 BASIC12.44□□□□□ -0.42
CX3CR1P49238 MAX-218ENST00000557746 571 ntTSL 4 BASIC12.44□□□□□ -0.42
CX3CR1P49238 TMEM208-207ENST00000563953 887 ntTSL 2 BASIC12.44□□□□□ -0.42
CX3CR1P49238 AC007861.2-201ENST00000573819 571 ntTSL 4 BASIC12.44□□□□□ -0.42
CX3CR1P49238 AC129510.1-201ENST00000579979 555 ntTSL 3 BASIC12.44□□□□□ -0.42
Retrieved 100 of 98,524 protein–RNA pairs in 54.1 ms