Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 CDK7-201ENST00000256443 1439 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
CUX1P39880 FANK1-203ENST00000368693 1294 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
CUX1P39880 IL1RN-205ENST00000409930 848 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
CUX1P39880 AP000343.1-201ENST00000440602 385 ntBASIC22.66■■□□□ 1.22
CUX1P39880 RNASEH2CP1-201ENST00000454281 502 ntBASIC22.66■■□□□ 1.22
CUX1P39880 AC008021.1-201ENST00000474180 414 ntBASIC22.66■■□□□ 1.22
CUX1P39880 AC092656.1-202ENST00000515843 998 ntTSL 4 BASIC22.66■■□□□ 1.22
CUX1P39880 STMN4-203ENST00000519614 1273 ntTSL 1 (best) BASIC22.66■■□□□ 1.22
CUX1P39880 AL583722.3-201ENST00000553433 503 ntTSL 4 BASIC22.66■■□□□ 1.22
CUX1P39880 ANAPC11-214ENST00000578544 403 ntTSL 3 BASIC22.66■■□□□ 1.22
CUX1P39880 AL450487.2-201ENST00000615934 407 ntBASIC22.66■■□□□ 1.22
CUX1P39880 CDIPT-AS1-203ENST00000638164 713 ntBASIC22.66■■□□□ 1.22
CUX1P39880 LZTS3-202ENST00000337576 4238 ntAPPRIS P1 TSL 5 BASIC22.66■■□□□ 1.22
CUX1P39880 MEGF10-202ENST00000418761 2238 ntTSL 1 (best) BASIC22.66■■□□□ 1.22
CUX1P39880 MCRS1-203ENST00000546244 1686 ntTSL 1 (best) BASIC22.66■■□□□ 1.22
CUX1P39880 COL18A1-204ENST00000400337 5436 ntTSL 1 (best) BASIC22.66■■□□□ 1.22
CUX1P39880 PPFIBP1-216ENST00000545334 2805 ntTSL 2 BASIC22.66■■□□□ 1.22
CUX1P39880 ZNF324-201ENST00000196482 3000 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
CUX1P39880 HNF4G-201ENST00000354370 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC22.65■■□□□ 1.22
CUX1P39880 AP001258.1-201ENST00000501817 2110 ntTSL 5 BASIC22.65■■□□□ 1.22
CUX1P39880 SAP18-208ENST00000621421 2300 ntAPPRIS P2 TSL 1 (best) BASIC22.65■■□□□ 1.22
CUX1P39880 IGF2-205ENST00000416167 5585 ntAPPRIS P2 TSL 1 (best) BASIC22.65■■□□□ 1.22
CUX1P39880 AOC1-201ENST00000360937 2649 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
CUX1P39880 GGT1-203ENST00000400382 2628 ntAPPRIS P1 TSL 2 BASIC22.65■■□□□ 1.22
CUX1P39880 EP400-203ENST00000333577 3092 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
CUX1P39880 PPP1R21-201ENST00000281394 3137 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
CUX1P39880 UBE2E2-202ENST00000396703 2748 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
CUX1P39880 PODNL1-204ENST00000538517 2744 ntTSL 2 BASIC22.65■■□□□ 1.22
CUX1P39880 MAN1C1-203ENST00000374332 4641 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
CUX1P39880 MAN1C1-208ENST00000611903 4647 ntTSL 5 BASIC22.65■■□□□ 1.22
CUX1P39880 COQ4-202ENST00000372875 928 ntTSL 2 BASIC22.65■■□□□ 1.22
CUX1P39880 ASPDH-201ENST00000376916 848 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
CUX1P39880 AL356653.1-201ENST00000402743 360 ntBASIC22.65■■□□□ 1.22
CUX1P39880 POLR3H-204ENST00000407461 802 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
CUX1P39880 WDR54-202ENST00000409791 854 ntTSL 3 BASIC22.65■■□□□ 1.22
CUX1P39880 AP000346.2-202ENST00000425948 383 ntBASIC22.65■■□□□ 1.22
CUX1P39880 PRSS45-201ENST00000442359 687 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
CUX1P39880 PSMB8-AS1-206ENST00000458296 958 ntTSL 3 BASIC22.65■■□□□ 1.22
CUX1P39880 CHTF8-207ENST00000520529 475 ntTSL 2 BASIC22.65■■□□□ 1.22
CUX1P39880 THEG-204ENST00000530711 1162 ntAPPRIS ALT2 TSL 3 BASIC22.65■■□□□ 1.22
CUX1P39880 AP003108.1-201ENST00000534856 554 ntTSL 4 BASIC22.65■■□□□ 1.22
CUX1P39880 MST1L-204ENST00000545160 559 ntTSL 4 BASIC22.65■■□□□ 1.22
CUX1P39880 LAMTOR1-208ENST00000545249 965 ntTSL 3 BASIC22.65■■□□□ 1.22
CUX1P39880 AC012617.1-202ENST00000586488 509 ntTSL 2 BASIC22.65■■□□□ 1.22
CUX1P39880 MFSD12-215ENST00000615613 688 ntBASIC22.65■■□□□ 1.22
CUX1P39880 TARM1-202ENST00000616041 1218 ntAPPRIS ALT2 TSL 2 BASIC22.65■■□□□ 1.22
CUX1P39880 SUCLG2-203ENST00000492795 1512 ntTSL 2 BASIC22.65■■□□□ 1.22
CUX1P39880 MYCBPAP-201ENST00000323776 3186 ntAPPRIS P2 TSL 1 (best) BASIC22.65■■□□□ 1.22
CUX1P39880 ARID4B-203ENST00000366603 5946 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
CUX1P39880 MRRF-201ENST00000297908 1841 ntTSL 2 BASIC22.65■■□□□ 1.22
CUX1P39880 SLC25A34-201ENST00000294454 2986 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
CUX1P39880 AC097474.1-201ENST00000506481 1371 ntBASIC22.65■■□□□ 1.22
CUX1P39880 ZIK1-201ENST00000307468 2510 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
CUX1P39880 TTC13-201ENST00000366661 3253 ntAPPRIS P3 TSL 1 (best) BASIC22.64■■□□□ 1.22
CUX1P39880 ANKRD36BP2-202ENST00000421951 1899 ntTSL 3 BASIC22.64■■□□□ 1.22
CUX1P39880 FKBP5-201ENST00000357266 3772 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.22
CUX1P39880 TJP3-207ENST00000589378 3068 ntAPPRIS ALT2 TSL 2 BASIC22.64■■□□□ 1.22
CUX1P39880 DENND1A-203ENST00000373624 5010 ntAPPRIS P4 TSL 5 BASIC22.64■■□□□ 1.22
CUX1P39880 NPHP4-211ENST00000622020 3004 ntTSL 5 BASIC22.64■■□□□ 1.22
CUX1P39880 PAX5-203ENST00000377847 996 ntTSL 1 (best) BASIC22.64■■□□□ 1.21
CUX1P39880 AC015691.1-201ENST00000394793 535 ntTSL 3 BASIC22.64■■□□□ 1.21
CUX1P39880 CR769775.1-203ENST00000399894 579 ntTSL 3 BASIC22.64■■□□□ 1.21
CUX1P39880 ATP5J-204ENST00000400093 1179 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.21
CUX1P39880 CACYBPP3-201ENST00000406011 625 ntBASIC22.64■■□□□ 1.21
CUX1P39880 AL357558.2-201ENST00000431915 425 ntTSL 2 BASIC22.64■■□□□ 1.21
CUX1P39880 HTATIP2-203ENST00000443524 967 ntAPPRIS P1 TSL 2 BASIC22.64■■□□□ 1.21
CUX1P39880 RN7SL638P-201ENST00000494527 290 ntBASIC22.64■■□□□ 1.21
CUX1P39880 RPL10P8-201ENST00000522888 313 ntBASIC22.64■■□□□ 1.21
CUX1P39880 PAX5-213ENST00000523145 830 ntTSL 1 (best) BASIC22.64■■□□□ 1.21
CUX1P39880 RPL26-209ENST00000584164 873 ntAPPRIS P1 TSL 2 BASIC22.64■■□□□ 1.21
CUX1P39880 ZNF251-201ENST00000292562 2807 ntAPPRIS P1 TSL 2 BASIC22.64■■□□□ 1.21
CUX1P39880 OXGR1-204ENST00000543457 1305 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.21
CUX1P39880 TLN2-202ENST00000472902 2116 ntTSL 1 (best) BASIC22.64■■□□□ 1.21
CUX1P39880 BAG5-201ENST00000299204 4848 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.21
CUX1P39880 MED15-202ENST00000292733 3252 ntAPPRIS P3 TSL 1 (best) BASIC22.64■■□□□ 1.21
CUX1P39880 CLP1-202ENST00000525602 1392 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.21
CUX1P39880 PRSS30P-201ENST00000390681 2881 ntTSL 1 (best) BASIC22.64■■□□□ 1.21
CUX1P39880 SV2A-201ENST00000369145 2903 ntTSL 2 BASIC22.64■■□□□ 1.21
CUX1P39880 ZNF793-205ENST00000587143 1488 ntAPPRIS P1 TSL 4 BASIC22.64■■□□□ 1.21
CUX1P39880 FMR1-203ENST00000370470 1774 ntTSL 5 BASIC22.63■■□□□ 1.21
CUX1P39880 HTR3E-202ENST00000415389 2139 ntAPPRIS ALT2 TSL 1 (best) BASIC22.63■■□□□ 1.21
CUX1P39880 ATP6V0D1-218ENST00000602876 1554 ntTSL 5 BASIC22.63■■□□□ 1.21
CUX1P39880 TAMM41-201ENST00000273037 1297 ntTSL 1 (best) BASIC22.63■■□□□ 1.21
CUX1P39880 ZMAT5-201ENST00000344318 899 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
CUX1P39880 KLK8-203ENST00000347619 555 ntTSL 2 BASIC22.63■■□□□ 1.21
CUX1P39880 TRBV20OR9-2-201ENST00000379435 416 ntAPPRIS P1 BASIC22.63■■□□□ 1.21
CUX1P39880 IGHV3-11-201ENST00000390601 473 ntAPPRIS P1 BASIC22.63■■□□□ 1.21
CUX1P39880 NR1I3-210ENST00000437437 973 ntTSL 1 (best) BASIC22.63■■□□□ 1.21
CUX1P39880 Z69733.1-201ENST00000445990 632 ntTSL 3 BASIC22.63■■□□□ 1.21
CUX1P39880 IQSEC2-205ENST00000498281 673 ntTSL 3 BASIC22.63■■□□□ 1.21
CUX1P39880 ATP5L2-201ENST00000505920 799 ntAPPRIS P1 BASIC22.63■■□□□ 1.21
CUX1P39880 HNRNPA1P4-201ENST00000509706 756 ntBASIC22.63■■□□□ 1.21
CUX1P39880 FAR1-IT1-201ENST00000525233 368 ntTSL 3 BASIC22.63■■□□□ 1.21
CUX1P39880 Z92544.2-202ENST00000566927 407 ntTSL 3 BASIC22.63■■□□□ 1.21
CUX1P39880 AL031768.1-201ENST00000606542 701 ntBASIC22.63■■□□□ 1.21
CUX1P39880 SMYD5-209ENST00000629411 246 ntTSL 5 BASIC22.63■■□□□ 1.21
CUX1P39880 CDC42EP4-202ENST00000439510 2879 ntTSL 2 BASIC22.63■■□□□ 1.21
CUX1P39880 C18orf63-201ENST00000579455 5127 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
CUX1P39880 LRRC41-201ENST00000343304 2947 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
CUX1P39880 TMC5-203ENST00000396229 4917 ntAPPRIS ALT2 TSL 5 BASIC22.63■■□□□ 1.21
Retrieved 100 of 98,524 protein–RNA pairs in 52.4 ms