Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 UVSSA-206ENST00000507531 2597 ntAPPRIS P2 TSL 1 (best) BASIC12.33□□□□□ -0.44
COL8A1P27658 ALDH8A1-204ENST00000367847 1587 ntTSL 2 BASIC12.33□□□□□ -0.44
COL8A1P27658 DKFZP434A062-201ENST00000573103 5021 ntBASIC12.33□□□□□ -0.44
COL8A1P27658 SYTL3-205ENST00000611299 2896 ntAPPRIS ALT1 TSL 5 BASIC12.33□□□□□ -0.44
COL8A1P27658 PSG4-203ENST00000433626 1887 ntTSL 2 BASIC12.33□□□□□ -0.44
COL8A1P27658 NRP2-201ENST00000272849 5909 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
COL8A1P27658 PTPRH-201ENST00000263434 3343 ntAPPRIS ALT2 TSL 1 (best) BASIC12.33□□□□□ -0.44
COL8A1P27658 FAM86B1-216ENST00000533852 2043 ntAPPRIS ALT2 TSL 5 BASIC12.33□□□□□ -0.44
COL8A1P27658 PEX26-205ENST00000610387 3924 ntTSL 5 BASIC12.33□□□□□ -0.44
COL8A1P27658 CREB3L3-201ENST00000078445 2618 ntAPPRIS P3 TSL 1 (best) BASIC12.33□□□□□ -0.44
COL8A1P27658 MED16-207ENST00000589119 2772 ntAPPRIS P2 TSL 1 (best) BASIC12.33□□□□□ -0.44
COL8A1P27658 SYBU-208ENST00000440310 3072 ntAPPRIS ALT2 TSL 5 BASIC12.33□□□□□ -0.44
COL8A1P27658 KLK4-201ENST00000324041 1347 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
COL8A1P27658 FLI1-205ENST00000527786 4127 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
COL8A1P27658 CFLAR-206ENST00000395148 4415 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
COL8A1P27658 AC007952.5-201ENST00000572818 1486 ntBASIC12.33□□□□□ -0.44
COL8A1P27658 TACC3-212ENST00000612220 1756 ntTSL 5 BASIC12.33□□□□□ -0.44
COL8A1P27658 RTP1-201ENST00000312295 2217 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
COL8A1P27658 RAI2-204ENST00000451717 2224 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
COL8A1P27658 HCK-209ENST00000538448 2215 ntAPPRIS ALT2 TSL 2 BASIC12.33□□□□□ -0.44
COL8A1P27658 DEPDC5-203ENST00000400242 2395 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
COL8A1P27658 CYP27B1-201ENST00000228606 2540 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
COL8A1P27658 GGACT-202ENST00000455100 2678 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
COL8A1P27658 ERRFI1-201ENST00000377482 3104 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
COL8A1P27658 MTRF1L-201ENST00000367230 3431 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
COL8A1P27658 CDH24-202ENST00000397359 3552 ntTSL 5 BASIC12.33□□□□□ -0.44
COL8A1P27658 INPPL1-213ENST00000541756 4649 ntTSL 5 BASIC12.33□□□□□ -0.44
COL8A1P27658 KRT77-201ENST00000341809 3305 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
COL8A1P27658 TRAF6-201ENST00000348124 2558 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
COL8A1P27658 PROSER3-202ENST00000396908 2149 ntAPPRIS P5 TSL 1 (best) BASIC12.32□□□□□ -0.44
COL8A1P27658 POLR3K-201ENST00000293860 1392 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
COL8A1P27658 SHANK2-202ENST00000357171 1373 ntTSL 5 BASIC12.32□□□□□ -0.44
COL8A1P27658 KCNT1-208ENST00000488444 3696 ntAPPRIS ALT2 TSL 5 BASIC12.32□□□□□ -0.44
COL8A1P27658 CPSF7-205ENST00000439958 3524 ntAPPRIS ALT1 TSL 1 (best) BASIC12.32□□□□□ -0.44
COL8A1P27658 SLC20A1-201ENST00000272542 3381 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
COL8A1P27658 DIAPH2-204ENST00000373054 3376 ntAPPRIS ALT2 TSL 5 BASIC12.32□□□□□ -0.44
COL8A1P27658 DLGAP2-215ENST00000637795 3380 ntTSL 5 BASIC12.32□□□□□ -0.44
COL8A1P27658 SIPA1-203ENST00000527525 3235 ntTSL 2 BASIC12.32□□□□□ -0.44
COL8A1P27658 ZNF664-204ENST00000538932 4321 ntAPPRIS P1 TSL 3 BASIC12.32□□□□□ -0.44
COL8A1P27658 ZNF385A-201ENST00000338010 2331 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
COL8A1P27658 PKD2L2-205ENST00000508638 2333 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
COL8A1P27658 GOLGA8DP-202ENST00000341390 2184 ntBASIC12.32□□□□□ -0.44
COL8A1P27658 AP000704.1-201ENST00000637940 2182 ntTSL 5 BASIC12.32□□□□□ -0.44
COL8A1P27658 MAP3K10-201ENST00000253055 3436 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
COL8A1P27658 SLC36A1-207ENST00000520701 2005 ntAPPRIS P1 TSL 5 BASIC12.32□□□□□ -0.44
COL8A1P27658 CFAP46-202ENST00000368586 8278 ntAPPRIS P2 TSL 5 BASIC12.32□□□□□ -0.44
COL8A1P27658 AC019109.1-201ENST00000401725 1874 ntBASIC12.32□□□□□ -0.44
COL8A1P27658 TBC1D24-207ENST00000627285 4382 ntAPPRIS P3 TSL 5 BASIC12.32□□□□□ -0.44
COL8A1P27658 FHDC1-202ENST00000511601 6583 ntAPPRIS P1 TSL 5 BASIC12.32□□□□□ -0.44
COL8A1P27658 PUS1-202ENST00000376649 4094 ntAPPRIS P3 TSL 1 (best) BASIC12.32□□□□□ -0.44
COL8A1P27658 DPEP1-202ENST00000393092 1734 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
COL8A1P27658 THEMIS2-202ENST00000373921 2687 ntAPPRIS P1 TSL 5 BASIC12.32□□□□□ -0.44
COL8A1P27658 RALGDS-202ENST00000372050 3634 ntAPPRIS P3 TSL 1 (best) BASIC12.32□□□□□ -0.44
COL8A1P27658 COL22A1-201ENST00000303045 6346 ntAPPRIS P2 TSL 1 (best) BASIC12.32□□□□□ -0.44
COL8A1P27658 CYB561D1-204ENST00000420578 3326 ntAPPRIS P3 TSL 1 (best) BASIC12.32□□□□□ -0.44
COL8A1P27658 MLF1-201ENST00000355893 2203 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
COL8A1P27658 TOB1-202ENST00000499247 2229 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
COL8A1P27658 CBLN4-201ENST00000064571 3024 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
COL8A1P27658 PMCHL1-203ENST00000423301 697 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
COL8A1P27658 HNRNPA1P21-201ENST00000424115 961 ntBASIC12.32□□□□□ -0.44
COL8A1P27658 KRT19P4-201ENST00000443208 943 ntBASIC12.32□□□□□ -0.44
COL8A1P27658 HNRNPA1P56-201ENST00000505767 954 ntBASIC12.32□□□□□ -0.44
COL8A1P27658 AC122694.1-201ENST00000510987 563 ntTSL 4 BASIC12.32□□□□□ -0.44
COL8A1P27658 BMF-206ENST00000558774 671 ntTSL 3 BASIC12.32□□□□□ -0.44
COL8A1P27658 CES1P2-201ENST00000566467 1242 ntBASIC12.32□□□□□ -0.44
COL8A1P27658 AC079414.2-201ENST00000567157 1104 ntBASIC12.32□□□□□ -0.44
COL8A1P27658 AC087741.1-204ENST00000573935 646 ntTSL 3 BASIC12.32□□□□□ -0.44
COL8A1P27658 SHBG-217ENST00000576478 639 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
COL8A1P27658 RN7SL524P-201ENST00000581152 300 ntBASIC12.32□□□□□ -0.44
COL8A1P27658 ACTBP9-201ENST00000587663 1099 ntBASIC12.32□□□□□ -0.44
COL8A1P27658 HAMP-203ENST00000598398 652 ntAPPRIS P1 TSL 2 BASIC12.32□□□□□ -0.44
COL8A1P27658 URAHP-205ENST00000610227 398 ntBASIC12.32□□□□□ -0.44
COL8A1P27658 AC091769.1-201ENST00000619576 568 ntBASIC12.32□□□□□ -0.44
COL8A1P27658 LINC01398-202ENST00000634819 1292 ntTSL 5 BASIC12.32□□□□□ -0.44
COL8A1P27658 FBLN2-203ENST00000404922 4318 ntAPPRIS P4 TSL 5 BASIC12.32□□□□□ -0.44
COL8A1P27658 AC009242.1-201ENST00000634300 2706 ntTSL 5 BASIC12.32□□□□□ -0.44
COL8A1P27658 SLC34A1-201ENST00000324417 2573 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
COL8A1P27658 ANKRD18A-201ENST00000399703 4041 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
COL8A1P27658 AC021683.1-201ENST00000585798 1767 ntTSL 5 BASIC12.32□□□□□ -0.44
COL8A1P27658 AC007743.1-201ENST00000596663 3075 ntTSL 2 BASIC12.32□□□□□ -0.44
COL8A1P27658 RGPD5-202ENST00000272454 2907 ntTSL 2 BASIC12.32□□□□□ -0.44
COL8A1P27658 AC005324.3-201ENST00000455584 5514 ntAPPRIS P1 TSL 2 BASIC12.32□□□□□ -0.44
COL8A1P27658 ODCP-201ENST00000459650 1639 ntBASIC12.32□□□□□ -0.44
COL8A1P27658 PWP2-201ENST00000291576 3297 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
COL8A1P27658 ISCA2-204ENST00000556816 2626 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
COL8A1P27658 SMYD1-203ENST00000444564 1816 ntTSL 5 BASIC12.32□□□□□ -0.44
COL8A1P27658 DNAJC2-203ENST00000379263 2167 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
COL8A1P27658 ELL-201ENST00000262809 4027 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
COL8A1P27658 TFAP2A-201ENST00000319516 2035 ntTSL 5 BASIC12.32□□□□□ -0.44
COL8A1P27658 RCOR3-203ENST00000419091 2041 ntAPPRIS P1 TSL 2 BASIC12.32□□□□□ -0.44
COL8A1P27658 ARHGEF3-212ENST00000495373 2024 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
COL8A1P27658 MAGEA2-209ENST00000623806 2025 ntAPPRIS P1 TSL 2 BASIC12.32□□□□□ -0.44
COL8A1P27658 SUOX-204ENST00000394115 2394 ntAPPRIS P1 TSL 2 BASIC12.32□□□□□ -0.44
COL8A1P27658 CREB3L2-204ENST00000456390 2360 ntTSL 2 BASIC12.32□□□□□ -0.44
COL8A1P27658 PDK2-201ENST00000007708 2384 ntTSL 2 BASIC12.32□□□□□ -0.44
COL8A1P27658 SLC12A7-201ENST00000264930 5280 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
COL8A1P27658 AC087481.3-201ENST00000602886 1894 ntBASIC12.31□□□□□ -0.44
COL8A1P27658 MAP3K8-201ENST00000263056 3096 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
COL8A1P27658 ACP2-212ENST00000533929 1366 ntTSL 2 BASIC12.31□□□□□ -0.44
COL8A1P27658 ATP6V0A1-204ENST00000537728 2774 ntTSL 2 BASIC12.31□□□□□ -0.44
Retrieved 100 of 98,524 protein–RNA pairs in 49.3 ms