Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 PIGT-246ENST00000639499 2021 ntTSL 5 BASIC14.04□□□□□ -0.16
VCANP13611 CTDSP1-201ENST00000273062 2638 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
VCANP13611 IL18BP-205ENST00000393705 1549 ntAPPRIS P2 TSL 1 (best) BASIC14.04□□□□□ -0.16
VCANP13611 TMEM64-203ENST00000458549 4997 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
VCANP13611 MAGED4B-201ENST00000335504 2578 ntAPPRIS P3 TSL 1 (best) BASIC14.04□□□□□ -0.16
VCANP13611 TMEM45A-202ENST00000403410 1910 ntTSL 5 BASIC14.04□□□□□ -0.16
VCANP13611 BX322557.2-201ENST00000445242 379 ntTSL 3 BASIC14.04□□□□□ -0.16
VCANP13611 AL583824.1-203ENST00000457948 761 ntTSL 2 BASIC14.04□□□□□ -0.16
VCANP13611 DIS3L2P1-201ENST00000509197 559 ntBASIC14.04□□□□□ -0.16
VCANP13611 AL109983.1-201ENST00000603234 646 ntBASIC14.04□□□□□ -0.16
VCANP13611 AC007378.1-201ENST00000609765 478 ntBASIC14.04□□□□□ -0.16
VCANP13611 Metazoa_SRP.97-201ENST00000618280 304 ntBASIC14.04□□□□□ -0.16
VCANP13611 SLC7A4-201ENST00000382932 2313 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
VCANP13611 SLC7A4-202ENST00000403586 2307 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
VCANP13611 GP6-201ENST00000310373 2268 ntAPPRIS P3 TSL 1 (best) BASIC14.04□□□□□ -0.16
VCANP13611 CDIP1-205ENST00000563332 2774 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
VCANP13611 CTBP1-AS2-205ENST00000578730 2757 ntTSL 2 BASIC14.04□□□□□ -0.16
VCANP13611 TMEM115-201ENST00000266025 2197 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
VCANP13611 PSMC3-213ENST00000619920 1580 ntAPPRIS P2 TSL 1 (best) BASIC14.04□□□□□ -0.16
VCANP13611 C21orf58-204ENST00000397682 2941 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
VCANP13611 SPRY2-201ENST00000377102 2708 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
VCANP13611 MCC-202ENST00000408903 3476 ntAPPRIS P1 TSL 2 BASIC14.04□□□□□ -0.16
VCANP13611 MICB-201ENST00000252229 2446 ntAPPRIS P3 TSL 1 (best) BASIC14.04□□□□□ -0.16
VCANP13611 TNNT2-201ENST00000236918 1098 ntAPPRIS ALT2 TSL 5 BASIC14.04□□□□□ -0.16
VCANP13611 LST1-208ENST00000376093 648 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
VCANP13611 NUDT2-203ENST00000379158 1075 ntAPPRIS P1 TSL 3 BASIC14.04□□□□□ -0.16
VCANP13611 CSRP1-219ENST00000533432 1149 ntAPPRIS P1 TSL 2 BASIC14.04□□□□□ -0.16
VCANP13611 AC078878.2-201ENST00000543451 286 ntTSL 5 BASIC14.04□□□□□ -0.16
VCANP13611 AL512310.5-201ENST00000551999 515 ntBASIC14.04□□□□□ -0.16
VCANP13611 AL049871.1-201ENST00000557475 880 ntTSL 5 BASIC14.04□□□□□ -0.16
VCANP13611 MXRA7-204ENST00000585519 540 ntAPPRIS ALT2 TSL 5 BASIC14.04□□□□□ -0.16
VCANP13611 ARHGAP4-202ENST00000370016 3095 ntAPPRIS ALT2 TSL 5 BASIC14.04□□□□□ -0.16
VCANP13611 NEK2-201ENST00000366998 1865 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
VCANP13611 PRPH-201ENST00000257860 3245 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
VCANP13611 DDX39B-201ENST00000376177 1529 ntTSL 5 BASIC14.04□□□□□ -0.16
VCANP13611 RNF123-202ENST00000432042 2670 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
VCANP13611 OS9-220ENST00000552285 2135 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
VCANP13611 PEX11B-203ENST00000537888 1632 ntTSL 2 BASIC14.04□□□□□ -0.16
VCANP13611 RNA5SP84-201ENST00000364740 107 ntBASIC14.03□□□□□ -0.16
VCANP13611 AC090192.2-201ENST00000517482 553 ntTSL 4 BASIC14.03□□□□□ -0.16
VCANP13611 AP003168.2-201ENST00000531215 471 ntTSL 3 BASIC14.03□□□□□ -0.16
VCANP13611 AC116552.1-201ENST00000563243 733 ntTSL 3 BASIC14.03□□□□□ -0.16
VCANP13611 SNRPD2-203ENST00000585392 379 ntTSL 3 BASIC14.03□□□□□ -0.16
VCANP13611 AL109954.3-201ENST00000615088 558 ntBASIC14.03□□□□□ -0.16
VCANP13611 GARS-210ENST00000627489 324 ntTSL 4 BASIC14.03□□□□□ -0.16
VCANP13611 C14orf39-201ENST00000321731 2813 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
VCANP13611 TNIP1-219ENST00000524280 1716 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
VCANP13611 AC012617.1-204ENST00000586340 2305 ntBASIC14.03□□□□□ -0.16
VCANP13611 OR2V1-205ENST00000642036 2609 ntAPPRIS P1 BASIC14.03□□□□□ -0.16
VCANP13611 CDC20P1-201ENST00000488829 1500 ntBASIC14.03□□□□□ -0.16
VCANP13611 KATNBL1-201ENST00000256544 2723 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
VCANP13611 GPI-205ENST00000586425 1799 ntTSL 5 BASIC14.03□□□□□ -0.16
VCANP13611 AC005562.1-201ENST00000583030 3219 ntBASIC14.03□□□□□ -0.16
VCANP13611 REC8-209ENST00000611366 2331 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
VCANP13611 CYB561-201ENST00000360793 3001 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
VCANP13611 LINC00937-207ENST00000544461 3033 ntTSL 2 BASIC14.03□□□□□ -0.16
VCANP13611 SLC4A1-206ENST00000631130 1433 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
VCANP13611 SLC19A2-201ENST00000236137 3671 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
VCANP13611 LIPA-205ENST00000456827 2527 ntTSL 3 BASIC14.03□□□□□ -0.16
VCANP13611 ZNF114-201ENST00000315849 2206 ntAPPRIS P1 TSL 2 BASIC14.03□□□□□ -0.16
VCANP13611 NR4A1-202ENST00000360284 2589 ntTSL 2 BASIC14.03□□□□□ -0.16
VCANP13611 CPPED1-201ENST00000261660 1898 ntTSL 2 BASIC14.03□□□□□ -0.16
VCANP13611 SLC12A4-202ENST00000422611 4670 ntTSL 2 BASIC14.03□□□□□ -0.16
VCANP13611 KRTAP10-11-201ENST00000334670 1237 ntAPPRIS P1 BASIC14.03□□□□□ -0.16
VCANP13611 MBL3P-201ENST00000402234 644 ntBASIC14.03□□□□□ -0.16
VCANP13611 TSEN15P3-201ENST00000422363 367 ntBASIC14.03□□□□□ -0.16
VCANP13611 HLA-DQB3-203ENST00000425319 356 ntBASIC14.03□□□□□ -0.16
VCANP13611 AC006987.4-201ENST00000430032 279 ntBASIC14.03□□□□□ -0.16
VCANP13611 PRAMEF35P-201ENST00000458709 891 ntBASIC14.03□□□□□ -0.16
VCANP13611 SCOC-209ENST00000512749 841 ntAPPRIS ALT1 TSL 3 BASIC14.03□□□□□ -0.16
VCANP13611 AC104759.1-201ENST00000559109 939 ntBASIC14.03□□□□□ -0.16
VCANP13611 AP003096.1-201ENST00000565199 503 ntTSL 3 BASIC14.03□□□□□ -0.16
VCANP13611 AC108102.1-201ENST00000606528 548 ntTSL 3 BASIC14.03□□□□□ -0.16
VCANP13611 AC018904.2-201ENST00000561202 1757 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
VCANP13611 CD68-201ENST00000250092 1878 ntAPPRIS P3 TSL 1 (best) BASIC14.03□□□□□ -0.16
VCANP13611 PRL-203ENST00000617911 1364 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
VCANP13611 CA6-205ENST00000480186 1493 ntTSL 2 BASIC14.03□□□□□ -0.16
VCANP13611 ITGB5-201ENST00000296181 4372 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
VCANP13611 TRO-225ENST00000622017 1403 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.16
VCANP13611 GUCY1A3-213ENST00000621234 1788 ntTSL 5 BASIC14.02□□□□□ -0.16
VCANP13611 LINC00967-203ENST00000518035 1502 ntTSL 2 BASIC14.02□□□□□ -0.16
VCANP13611 CD300LB-201ENST00000314401 993 ntAPPRIS ALT2 TSL 2 BASIC14.02□□□□□ -0.16
VCANP13611 FCER1A-201ENST00000368114 765 ntTSL 3 BASIC14.02□□□□□ -0.16
VCANP13611 TRBV20OR9-2-201ENST00000379435 416 ntAPPRIS P1 BASIC14.02□□□□□ -0.16
VCANP13611 SNU13-204ENST00000402458 462 ntTSL 3 BASIC14.02□□□□□ -0.16
VCANP13611 AC007322.2-201ENST00000414540 605 ntBASIC14.02□□□□□ -0.16
VCANP13611 GRP-202ENST00000420468 579 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.16
VCANP13611 PFN1P10-201ENST00000455962 327 ntBASIC14.02□□□□□ -0.16
VCANP13611 VAMP2-203ENST00000481878 557 ntAPPRIS ALT1 TSL 2 BASIC14.02□□□□□ -0.16
VCANP13611 AC098591.1-202ENST00000507914 937 ntBASIC14.02□□□□□ -0.16
VCANP13611 AC108082.1-201ENST00000510857 331 ntBASIC14.02□□□□□ -0.16
VCANP13611 FAR1-IT1-201ENST00000525233 368 ntTSL 3 BASIC14.02□□□□□ -0.16
VCANP13611 AL161668.2-201ENST00000531638 492 ntTSL 5 BASIC14.02□□□□□ -0.16
VCANP13611 LINC00963-217ENST00000624009 663 ntTSL 5 BASIC14.02□□□□□ -0.16
VCANP13611 Z82244.1-201ENST00000631502 840 ntBASIC14.02□□□□□ -0.16
VCANP13611 OPRL1-202ENST00000349451 3369 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
VCANP13611 AADACL4-201ENST00000376221 1575 ntAPPRIS P1 TSL 5 BASIC14.02□□□□□ -0.16
VCANP13611 BTN2A2-204ENST00000432533 1570 ntTSL 2 BASIC14.02□□□□□ -0.16
VCANP13611 SPHK2-210ENST00000599748 2683 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.16
VCANP13611 FLAD1-201ENST00000292180 2160 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 35.4 ms