Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 AL161644.1-201ENST00000426901 1111 ntTSL 2 BASIC13.44□□□□□ -0.26
VPS13AQ96RL7 RPL13AP5-201ENST00000439189 612 ntBASIC13.44□□□□□ -0.26
VPS13AQ96RL7 AC116347.1-201ENST00000442824 720 ntBASIC13.44□□□□□ -0.26
VPS13AQ96RL7 AC008808.2-201ENST00000510349 569 ntTSL 3 BASIC13.44□□□□□ -0.26
VPS13AQ96RL7 SMIM14-205ENST00000511809 830 ntTSL 2 BASIC13.44□□□□□ -0.26
VPS13AQ96RL7 AC022784.6-203ENST00000520255 863 ntTSL 3 BASIC13.44□□□□□ -0.26
VPS13AQ96RL7 AC010551.3-201ENST00000563772 463 ntTSL 5 BASIC13.44□□□□□ -0.26
VPS13AQ96RL7 AC005920.4-201ENST00000573301 492 ntTSL 4 BASIC13.44□□□□□ -0.26
VPS13AQ96RL7 PDLIM2-218ENST00000614502 599 ntTSL 2 BASIC13.44□□□□□ -0.26
VPS13AQ96RL7 AC010776.3-201ENST00000617349 424 ntBASIC13.44□□□□□ -0.26
VPS13AQ96RL7 LINC00869-208ENST00000621156 737 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
VPS13AQ96RL7 PISD-209ENST00000439502 1963 ntAPPRIS ALT2 TSL 1 (best) BASIC13.44□□□□□ -0.26
VPS13AQ96RL7 SLC44A2-201ENST00000335757 3671 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
VPS13AQ96RL7 AL157996.1-201ENST00000624684 2299 ntBASIC13.44□□□□□ -0.26
VPS13AQ96RL7 HNF1A-201ENST00000257555 3442 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
VPS13AQ96RL7 SETD6-203ENST00000394266 3423 ntTSL 5 BASIC13.44□□□□□ -0.26
VPS13AQ96RL7 CSAD-203ENST00000379846 1962 ntTSL 5 BASIC13.44□□□□□ -0.26
VPS13AQ96RL7 CCNL1-202ENST00000295926 2388 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
VPS13AQ96RL7 SNAPC2-206ENST00000597584 1413 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
VPS13AQ96RL7 FAM149A-202ENST00000356371 2997 ntAPPRIS ALT2 TSL 5 BASIC13.44□□□□□ -0.26
VPS13AQ96RL7 TRIM46-210ENST00000545012 2979 ntTSL 2 BASIC13.44□□□□□ -0.26
VPS13AQ96RL7 CYP4F22-201ENST00000269703 2641 ntAPPRIS P1 TSL 2 BASIC13.44□□□□□ -0.26
VPS13AQ96RL7 FANK1-203ENST00000368693 1294 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
VPS13AQ96RL7 IGLV2-33-201ENST00000390302 412 ntAPPRIS P1 BASIC13.44□□□□□ -0.26
VPS13AQ96RL7 ZBTB46-AS1-201ENST00000435912 533 ntTSL 3 BASIC13.44□□□□□ -0.26
VPS13AQ96RL7 RN7SL452P-201ENST00000482923 291 ntBASIC13.44□□□□□ -0.26
VPS13AQ96RL7 AL132780.2-203ENST00000555294 589 ntTSL 4 BASIC13.44□□□□□ -0.26
VPS13AQ96RL7 CA6-205ENST00000480186 1493 ntTSL 2 BASIC13.44□□□□□ -0.26
VPS13AQ96RL7 MAP2K4-201ENST00000353533 3826 ntAPPRIS P3 TSL 1 (best) BASIC13.44□□□□□ -0.26
VPS13AQ96RL7 LRRC34-208ENST00000522830 1781 ntAPPRIS ALT2 TSL 5 BASIC13.44□□□□□ -0.26
VPS13AQ96RL7 KRT8P42-201ENST00000405771 1399 ntBASIC13.44□□□□□ -0.26
VPS13AQ96RL7 FAM90A27P-201ENST00000593323 1370 ntBASIC13.44□□□□□ -0.26
VPS13AQ96RL7 FAM90A28P-202ENST00000597191 1374 ntBASIC13.44□□□□□ -0.26
VPS13AQ96RL7 AC009542.1-201ENST00000412549 1810 ntTSL 2 BASIC13.44□□□□□ -0.26
VPS13AQ96RL7 SELPLG-202ENST00000388962 1613 ntAPPRIS ALT2 TSL 5 BASIC13.44□□□□□ -0.26
VPS13AQ96RL7 PGAP2-201ENST00000278243 2062 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
VPS13AQ96RL7 POP4-201ENST00000221770 2321 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
VPS13AQ96RL7 DDC-204ENST00000426377 1700 ntTSL 3 BASIC13.44□□□□□ -0.26
VPS13AQ96RL7 CTRL-205ENST00000574481 1721 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
VPS13AQ96RL7 OR52N1-201ENST00000317078 963 ntAPPRIS P1 BASIC13.44□□□□□ -0.26
VPS13AQ96RL7 SGCA-202ENST00000344627 1057 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
VPS13AQ96RL7 TRBV20OR9-2-201ENST00000379435 416 ntAPPRIS P1 BASIC13.44□□□□□ -0.26
VPS13AQ96RL7 CORO1C-203ENST00000421578 1296 ntTSL 2 BASIC13.44□□□□□ -0.26
VPS13AQ96RL7 LAMTOR4-202ENST00000441173 730 ntTSL 2 BASIC13.44□□□□□ -0.26
VPS13AQ96RL7 HNRNPA1P9-201ENST00000450624 950 ntBASIC13.44□□□□□ -0.26
VPS13AQ96RL7 COQ10BP2-201ENST00000513804 724 ntBASIC13.44□□□□□ -0.26
VPS13AQ96RL7 AP002852.2-202ENST00000523572 592 ntTSL 4 BASIC13.44□□□□□ -0.26
VPS13AQ96RL7 PXN-AS1-205ENST00000542314 707 ntTSL 2 BASIC13.44□□□□□ -0.26
VPS13AQ96RL7 AC078878.2-201ENST00000543451 286 ntTSL 5 BASIC13.44□□□□□ -0.26
VPS13AQ96RL7 AC008894.2-202ENST00000599676 1027 ntTSL 3 BASIC13.44□□□□□ -0.26
VPS13AQ96RL7 TAGLN3-205ENST00000478951 1301 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
VPS13AQ96RL7 CACNA2D4-220ENST00000585732 2566 ntTSL 5 BASIC13.44□□□□□ -0.26
VPS13AQ96RL7 AC073264.3-201ENST00000636941 2577 ntAPPRIS P1 TSL 5 BASIC13.44□□□□□ -0.26
VPS13AQ96RL7 PIP5K1A-202ENST00000368888 2134 ntAPPRIS ALT2 TSL 1 (best) BASIC13.44□□□□□ -0.26
VPS13AQ96RL7 SIM2-201ENST00000290399 4442 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
VPS13AQ96RL7 BCAR1-202ENST00000393420 2667 ntTSL 5 BASIC13.43□□□□□ -0.26
VPS13AQ96RL7 SERPING1-201ENST00000278407 2002 ntAPPRIS P2 TSL 1 (best) BASIC13.43□□□□□ -0.26
VPS13AQ96RL7 GLB1L-202ENST00000392089 2574 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
VPS13AQ96RL7 TTC8-203ENST00000346301 2058 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
VPS13AQ96RL7 MRPL19-203ENST00000409374 1076 ntAPPRIS P1 TSL 5 BASIC13.43□□□□□ -0.26
VPS13AQ96RL7 AC064853.1-201ENST00000413096 540 ntTSL 4 BASIC13.43□□□□□ -0.26
VPS13AQ96RL7 AC105443.1-201ENST00000433754 712 ntBASIC13.43□□□□□ -0.26
VPS13AQ96RL7 HLA-W-207ENST00000439514 771 ntBASIC13.43□□□□□ -0.26
VPS13AQ96RL7 AC139143.1-201ENST00000441772 1207 ntBASIC13.43□□□□□ -0.26
VPS13AQ96RL7 BICD1P1-201ENST00000457832 1222 ntBASIC13.43□□□□□ -0.26
VPS13AQ96RL7 AL355075.5-201ENST00000553568 890 ntBASIC13.43□□□□□ -0.26
VPS13AQ96RL7 RN7SL134P-201ENST00000579756 303 ntBASIC13.43□□□□□ -0.26
VPS13AQ96RL7 COMP-203ENST00000542601 2707 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
VPS13AQ96RL7 KANK2-207ENST00000589894 2703 ntAPPRIS ALT2 TSL 5 BASIC13.43□□□□□ -0.26
VPS13AQ96RL7 DZIP1-204ENST00000376829 3738 ntAPPRIS P4 TSL 1 (best) BASIC13.43□□□□□ -0.26
VPS13AQ96RL7 SLC22A12-202ENST00000377567 2599 ntTSL 5 BASIC13.43□□□□□ -0.26
VPS13AQ96RL7 SNCAIP-203ENST00000379538 2588 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
VPS13AQ96RL7 HIST1H2AG-201ENST00000359193 2250 ntAPPRIS P1 BASIC13.43□□□□□ -0.26
VPS13AQ96RL7 KIAA0895L-202ENST00000561621 3500 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
VPS13AQ96RL7 HYAL1-202ENST00000320295 2324 ntAPPRIS P1 TSL 2 BASIC13.43□□□□□ -0.26
VPS13AQ96RL7 GNG4-203ENST00000391854 5104 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
VPS13AQ96RL7 TBPL2-201ENST00000247219 2037 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
VPS13AQ96RL7 SPRY1-208ENST00000622283 2352 ntAPPRIS P1 TSL 2 BASIC13.43□□□□□ -0.26
VPS13AQ96RL7 HTR3A-205ENST00000504030 2432 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
VPS13AQ96RL7 DDX49-201ENST00000247003 1830 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
VPS13AQ96RL7 MTA1-201ENST00000331320 2876 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
VPS13AQ96RL7 MST1P2-201ENST00000457982 2291 ntBASIC13.43□□□□□ -0.26
VPS13AQ96RL7 PDXDC1-218ENST00000627450 2683 ntTSL 2 BASIC13.43□□□□□ -0.26
VPS13AQ96RL7 ATP6V1B1-AS1-201ENST00000422761 1129 ntTSL 2 BASIC13.43□□□□□ -0.26
VPS13AQ96RL7 HNRNPA1P3-201ENST00000440968 551 ntBASIC13.43□□□□□ -0.26
VPS13AQ96RL7 CACNA1C-AS1-203ENST00000544517 742 ntTSL 4 BASIC13.43□□□□□ -0.26
VPS13AQ96RL7 TBXAS1-201ENST00000336425 2185 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
VPS13AQ96RL7 GREM1-202ENST00000560830 2648 ntTSL 2 BASIC13.43□□□□□ -0.26
VPS13AQ96RL7 DAXX-203ENST00000414083 2355 ntTSL 2 BASIC13.43□□□□□ -0.26
VPS13AQ96RL7 ANXA13-201ENST00000262219 1588 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
VPS13AQ96RL7 SLC13A5-203ENST00000433363 3435 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
VPS13AQ96RL7 CAMKK2-204ENST00000392473 2967 ntAPPRIS ALT2 TSL 1 (best) BASIC13.43□□□□□ -0.26
VPS13AQ96RL7 NDUFA6-AS1-203ENST00000439129 2950 ntTSL 5 BASIC13.43□□□□□ -0.26
VPS13AQ96RL7 TXNDC2-206ENST00000611534 2066 ntAPPRIS ALT2 TSL 5 BASIC13.43□□□□□ -0.26
VPS13AQ96RL7 LILRP2-201ENST00000413439 2127 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
VPS13AQ96RL7 MMP25-201ENST00000336577 3554 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
VPS13AQ96RL7 PPT1-203ENST00000433473 2267 ntAPPRIS ALT1 TSL 1 (best) BASIC13.42□□□□□ -0.26
VPS13AQ96RL7 GLIDR-204ENST00000638724 1765 ntTSL 5 BASIC13.42□□□□□ -0.26
VPS13AQ96RL7 GRP-201ENST00000256857 848 ntAPPRIS P3 TSL 1 (best) BASIC13.42□□□□□ -0.26
VPS13AQ96RL7 POLR2F-202ENST00000405557 560 ntTSL 5 BASIC13.42□□□□□ -0.26
Retrieved 100 of 98,524 protein–RNA pairs in 42.2 ms