Protein–RNA interactions for Protein: Q92544

TM9SF4, Transmembrane 9 superfamily member 4, humanhuman

Predictions only

Length 642 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF4Q92544 CD48-201ENST00000368045 1793 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
TM9SF4Q92544 SF1-201ENST00000227503 2850 ntAPPRIS P3 TSL 1 (best) BASIC13.41□□□□□ -0.26
TM9SF4Q92544 JPH3-201ENST00000284262 3985 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
TM9SF4Q92544 NLRX1-204ENST00000409991 3716 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
TM9SF4Q92544 RAB5B-202ENST00000448789 1530 ntTSL 2 BASIC13.41□□□□□ -0.26
TM9SF4Q92544 RAPGEF1-202ENST00000372190 6045 ntAPPRIS P4 TSL 1 (best) BASIC13.41□□□□□ -0.26
TM9SF4Q92544 IL9-201ENST00000274520 591 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
TM9SF4Q92544 ODF4-201ENST00000328248 1156 ntAPPRIS P3 TSL 1 (best) BASIC13.41□□□□□ -0.26
TM9SF4Q92544 TAF8-202ENST00000372978 794 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
TM9SF4Q92544 VCPKMT-201ENST00000395859 795 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
TM9SF4Q92544 C1QA-202ENST00000402322 976 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
TM9SF4Q92544 FAM200B-201ENST00000422728 2962 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
TM9SF4Q92544 LINC00278-201ENST00000425031 528 ntTSL 2 BASIC13.41□□□□□ -0.26
TM9SF4Q92544 AL137856.1-201ENST00000429398 773 ntTSL 3 BASIC13.41□□□□□ -0.26
TM9SF4Q92544 IL1R2-203ENST00000441002 1106 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
TM9SF4Q92544 FKBP11-202ENST00000444214 630 ntTSL 2 BASIC13.41□□□□□ -0.26
TM9SF4Q92544 SNHG14-206ENST00000450809 677 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
TM9SF4Q92544 RASA3-IT1-201ENST00000454005 380 ntTSL 3 BASIC13.41□□□□□ -0.26
TM9SF4Q92544 AC130709.1-201ENST00000484779 1212 ntBASIC13.41□□□□□ -0.26
TM9SF4Q92544 AC010973.2-201ENST00000485974 1230 ntTSL 2 BASIC13.41□□□□□ -0.26
TM9SF4Q92544 MSC-AS1-204ENST00000518916 864 ntTSL 3 BASIC13.41□□□□□ -0.26
TM9SF4Q92544 MANEAL-204ENST00000525897 1294 ntTSL 2 BASIC13.41□□□□□ -0.26
TM9SF4Q92544 ANO1-AS2-202ENST00000533327 498 ntTSL 3 BASIC13.41□□□□□ -0.26
TM9SF4Q92544 ANP32A-210ENST00000560303 724 ntAPPRIS ALT2 TSL 5 BASIC13.41□□□□□ -0.26
TM9SF4Q92544 SAXO2-207ENST00000566861 404 ntAPPRIS ALT2 TSL 2 BASIC13.41□□□□□ -0.26
TM9SF4Q92544 AC005632.3-201ENST00000605544 308 ntBASIC13.41□□□□□ -0.26
TM9SF4Q92544 ATRAID-207ENST00000606999 956 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
TM9SF4Q92544 AC092171.5-201ENST00000608012 942 ntBASIC13.41□□□□□ -0.26
TM9SF4Q92544 WHRN-202ENST00000362057 3566 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
TM9SF4Q92544 GOLGA8R-201ENST00000327271 1896 ntAPPRIS P1 TSL 5 BASIC13.41□□□□□ -0.26
TM9SF4Q92544 EBLN3P-202ENST00000625445 4520 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
TM9SF4Q92544 ABCB8-212ENST00000477719 1625 ntTSL 5 BASIC13.41□□□□□ -0.26
TM9SF4Q92544 UBL7-201ENST00000361351 1360 ntAPPRIS P1 TSL 5 BASIC13.41□□□□□ -0.26
TM9SF4Q92544 XPR1-201ENST00000367589 4126 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
TM9SF4Q92544 CAP2P1-201ENST00000557743 1390 ntBASIC13.41□□□□□ -0.26
TM9SF4Q92544 CHFR-205ENST00000450056 3250 ntTSL 2 BASIC13.41□□□□□ -0.26
TM9SF4Q92544 LRSAM1-204ENST00000373324 3044 ntTSL 2 BASIC13.41□□□□□ -0.26
TM9SF4Q92544 CNTN1-203ENST00000547702 3033 ntTSL 2 BASIC13.41□□□□□ -0.26
TM9SF4Q92544 INHBE-201ENST00000266646 2429 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
TM9SF4Q92544 IGHG3-202ENST00000641136 2751 ntAPPRIS P1 BASIC13.41□□□□□ -0.26
TM9SF4Q92544 RPL13-204ENST00000452368 1455 ntTSL 2 BASIC13.41□□□□□ -0.26
TM9SF4Q92544 SYCP2L-201ENST00000283141 3130 ntAPPRIS P2 TSL 1 (best) BASIC13.41□□□□□ -0.26
TM9SF4Q92544 TNFRSF11A-205ENST00000616710 3809 ntAPPRIS ALT2 TSL 1 (best) BASIC13.41□□□□□ -0.26
TM9SF4Q92544 TGM6-202ENST00000381423 2158 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
TM9SF4Q92544 AC023794.5-201ENST00000564380 2157 ntBASIC13.41□□□□□ -0.26
TM9SF4Q92544 NBPF26-208ENST00000620612 4602 ntAPPRIS P1 TSL 5 BASIC13.41□□□□□ -0.26
TM9SF4Q92544 GP6-201ENST00000310373 2268 ntAPPRIS P3 TSL 1 (best) BASIC13.41□□□□□ -0.26
TM9SF4Q92544 TRMT11-201ENST00000334379 1565 ntAPPRIS P2 TSL 1 (best) BASIC13.41□□□□□ -0.26
TM9SF4Q92544 AC009690.1-201ENST00000379915 4374 ntAPPRIS P1 TSL 2 BASIC13.41□□□□□ -0.26
TM9SF4Q92544 LINC00665-205ENST00000585356 1557 ntTSL 2 BASIC13.41□□□□□ -0.26
TM9SF4Q92544 RUBCNL-212ENST00000631139 1948 ntAPPRIS ALT2 TSL 2 BASIC13.41□□□□□ -0.26
TM9SF4Q92544 LTB4R-203ENST00000396789 4110 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
TM9SF4Q92544 CABLES2-201ENST00000279101 3785 ntAPPRIS P2 TSL 5 BASIC13.41□□□□□ -0.26
TM9SF4Q92544 STK3-201ENST00000419617 2826 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
TM9SF4Q92544 ZNF362-201ENST00000373428 2936 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
TM9SF4Q92544 HADH-202ENST00000403312 1752 ntTSL 5 BASIC13.4□□□□□ -0.26
TM9SF4Q92544 RGS8-204ENST00000483095 1432 ntAPPRIS P1 TSL 2 BASIC13.4□□□□□ -0.26
TM9SF4Q92544 DUSP28-202ENST00000405954 3461 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
TM9SF4Q92544 SUGP2-215ENST00000601879 5546 ntAPPRIS P3 TSL 2 BASIC13.4□□□□□ -0.26
TM9SF4Q92544 MAGI3-202ENST00000369611 3596 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
TM9SF4Q92544 XG-201ENST00000381174 2315 ntAPPRIS P3 TSL 1 (best) BASIC13.4□□□□□ -0.26
TM9SF4Q92544 MCRIP1-207ENST00000574190 2775 ntAPPRIS P1 TSL 2 BASIC13.4□□□□□ -0.26
TM9SF4Q92544 MED22-209ENST00000610888 3867 ntAPPRIS ALT1 TSL 1 (best) BASIC13.4□□□□□ -0.26
TM9SF4Q92544 C7orf57-203ENST00000430738 2056 ntTSL 5 BASIC13.4□□□□□ -0.26
TM9SF4Q92544 CLPB-209ENST00000538039 3078 ntAPPRIS ALT1 TSL 2 BASIC13.4□□□□□ -0.26
TM9SF4Q92544 CSTB-201ENST00000291568 2164 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
TM9SF4Q92544 PCDH8-201ENST00000338862 3708 ntAPPRIS ALT1 TSL 1 (best) BASIC13.4□□□□□ -0.26
TM9SF4Q92544 KRTAP19-7-201ENST00000334849 440 ntAPPRIS P1 BASIC13.4□□□□□ -0.26
TM9SF4Q92544 TNNT2-202ENST00000360372 969 ntTSL 5 BASIC13.4□□□□□ -0.26
TM9SF4Q92544 TNNT2-204ENST00000367317 1050 ntAPPRIS ALT2 TSL 5 BASIC13.4□□□□□ -0.26
TM9SF4Q92544 RPSAP31-201ENST00000416648 895 ntBASIC13.4□□□□□ -0.26
TM9SF4Q92544 TNNT2-209ENST00000421663 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC13.4□□□□□ -0.26
TM9SF4Q92544 AC254562.2-201ENST00000428786 667 ntTSL 3 BASIC13.4□□□□□ -0.26
TM9SF4Q92544 MYO16-AS1-201ENST00000439299 580 ntTSL 5 BASIC13.4□□□□□ -0.26
TM9SF4Q92544 DUTP3-201ENST00000450025 415 ntBASIC13.4□□□□□ -0.26
TM9SF4Q92544 BUD31-205ENST00000456893 512 ntTSL 5 BASIC13.4□□□□□ -0.26
TM9SF4Q92544 DUSP13-206ENST00000472493 920 ntAPPRIS P3 TSL 1 (best) BASIC13.4□□□□□ -0.26
TM9SF4Q92544 AC097103.2-201ENST00000504670 602 ntTSL 2 BASIC13.4□□□□□ -0.26
TM9SF4Q92544 CSTF3-206ENST00000524827 693 ntTSL 3 BASIC13.4□□□□□ -0.26
TM9SF4Q92544 TMEM218-205ENST00000527271 706 ntAPPRIS P1 TSL 2 BASIC13.4□□□□□ -0.26
TM9SF4Q92544 AC107871.2-202ENST00000563057 396 ntTSL 2 BASIC13.4□□□□□ -0.26
TM9SF4Q92544 PHBP15-201ENST00000574228 665 ntBASIC13.4□□□□□ -0.26
TM9SF4Q92544 AP000894.2-204ENST00000577358 473 ntTSL 5 BASIC13.4□□□□□ -0.26
TM9SF4Q92544 MIR3677-201ENST00000578964 60 ntBASIC13.4□□□□□ -0.26
TM9SF4Q92544 FAM104A-206ENST00000583024 417 ntTSL 3 BASIC13.4□□□□□ -0.26
TM9SF4Q92544 TPGS2-209ENST00000589049 1102 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
TM9SF4Q92544 AL031665.1-201ENST00000619766 572 ntTSL 4 BASIC13.4□□□□□ -0.26
TM9SF4Q92544 AC092299.1-201ENST00000632679 757 ntBASIC13.4□□□□□ -0.26
TM9SF4Q92544 TGFBRAP1-201ENST00000258449 2827 ntAPPRIS P1 TSL 5 BASIC13.4□□□□□ -0.26
TM9SF4Q92544 ADAM33-201ENST00000350009 3480 ntAPPRIS ALT2 TSL 5 BASIC13.4□□□□□ -0.26
TM9SF4Q92544 ZFP28-204ENST00000591844 3475 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
TM9SF4Q92544 C10orf71-201ENST00000374144 5230 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
TM9SF4Q92544 CCDC51-202ENST00000412398 1385 ntTSL 2 BASIC13.4□□□□□ -0.26
TM9SF4Q92544 SERPINA4-203ENST00000557004 2012 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
TM9SF4Q92544 CYP4B1-202ENST00000371919 1494 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
TM9SF4Q92544 AC020910.6-201ENST00000623084 1459 ntBASIC13.4□□□□□ -0.26
TM9SF4Q92544 MYLIP-201ENST00000349606 2796 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
TM9SF4Q92544 CYP4F23P-201ENST00000593402 1579 ntBASIC13.4□□□□□ -0.26
TM9SF4Q92544 RNF44-201ENST00000274811 4155 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
TM9SF4Q92544 BCL9L-201ENST00000334801 10005 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Retrieved 100 of 98,524 protein–RNA pairs in 46.5 ms