Protein–RNA interactions for Protein: Q8NEF3

CCDC112, Coiled-coil domain-containing protein 112, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC112Q8NEF3 TDG-209ENST00000544861 1387 ntTSL 2 BASIC15.66■□□□□ 0.1
CCDC112Q8NEF3 SPATS2-201ENST00000321898 3158 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
CCDC112Q8NEF3 FTO-214ENST00000636218 2227 ntTSL 5 BASIC15.66■□□□□ 0.1
CCDC112Q8NEF3 UGT3A1-201ENST00000274278 5122 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
CCDC112Q8NEF3 MUC20-203ENST00000436408 2463 ntAPPRIS ALT2 TSL 5 BASIC15.66■□□□□ 0.1
CCDC112Q8NEF3 RSPO2-202ENST00000517781 2748 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
CCDC112Q8NEF3 RPL39L-201ENST00000296277 756 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
CCDC112Q8NEF3 C19orf33-201ENST00000301246 467 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.1
CCDC112Q8NEF3 MRPL55-215ENST00000366742 630 ntAPPRIS P1 TSL 2 BASIC15.66■□□□□ 0.1
CCDC112Q8NEF3 GK-202ENST00000378941 458 ntTSL 3 BASIC15.66■□□□□ 0.1
CCDC112Q8NEF3 ATP6V1E1-202ENST00000399796 1208 ntTSL 2 BASIC15.66■□□□□ 0.1
CCDC112Q8NEF3 MRPS18AP1-201ENST00000414458 589 ntBASIC15.66■□□□□ 0.1
CCDC112Q8NEF3 POM121L8P-201ENST00000417732 1281 ntBASIC15.66■□□□□ 0.1
CCDC112Q8NEF3 GAS5-209ENST00000430245 723 ntTSL 3 BASIC15.66■□□□□ 0.1
CCDC112Q8NEF3 POM121L9P-203ENST00000441984 1285 ntBASIC15.66■□□□□ 0.1
CCDC112Q8NEF3 AJ271736.1-201ENST00000483543 773 ntTSL 5 BASIC15.66■□□□□ 0.1
CCDC112Q8NEF3 DOC2GP-202ENST00000514950 1163 ntBASIC15.66■□□□□ 0.1
CCDC112Q8NEF3 REEP4-207ENST00000523293 913 ntTSL 3 BASIC15.66■□□□□ 0.1
CCDC112Q8NEF3 AC068587.3-201ENST00000526613 355 ntBASIC15.66■□□□□ 0.1
CCDC112Q8NEF3 AL132639.3-201ENST00000556537 530 ntTSL 4 BASIC15.66■□□□□ 0.1
CCDC112Q8NEF3 SPATA8-AS1-201ENST00000558722 465 ntTSL 3 BASIC15.66■□□□□ 0.1
CCDC112Q8NEF3 AC026471.2-201ENST00000569782 655 ntTSL 2 BASIC15.66■□□□□ 0.1
CCDC112Q8NEF3 ZNF226-211ENST00000588742 447 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
CCDC112Q8NEF3 AC011479.1-202ENST00000591889 528 ntAPPRIS P1 TSL 2 BASIC15.66■□□□□ 0.1
CCDC112Q8NEF3 DBI-211ENST00000627093 554 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
CCDC112Q8NEF3 ADGRD1-201ENST00000261654 5168 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
CCDC112Q8NEF3 HSPA6-201ENST00000309758 2371 ntAPPRIS P1 BASIC15.66■□□□□ 0.1
CCDC112Q8NEF3 KCNS2-202ENST00000521839 4340 ntAPPRIS P1 TSL 5 BASIC15.66■□□□□ 0.1
CCDC112Q8NEF3 FAM193A-201ENST00000324666 4846 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
CCDC112Q8NEF3 BAIAP2-202ENST00000321300 2879 ntAPPRIS P4 TSL 1 (best) BASIC15.66■□□□□ 0.1
CCDC112Q8NEF3 SDR9C7-201ENST00000293502 1765 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
CCDC112Q8NEF3 SCN2B-201ENST00000278947 5826 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
CCDC112Q8NEF3 GMPR2-206ENST00000557854 2025 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
CCDC112Q8NEF3 PDCD6IPP2-206ENST00000566178 3351 ntTSL 5 BASIC15.66■□□□□ 0.1
CCDC112Q8NEF3 PPT1-203ENST00000433473 2267 ntAPPRIS ALT1 TSL 1 (best) BASIC15.66■□□□□ 0.1
CCDC112Q8NEF3 TCF7-218ENST00000520958 1408 ntTSL 2 BASIC15.66■□□□□ 0.1
CCDC112Q8NEF3 AP000593.2-201ENST00000542775 1433 ntBASIC15.66■□□□□ 0.1
CCDC112Q8NEF3 TRPM4-202ENST00000427978 3444 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
CCDC112Q8NEF3 KANK4-201ENST00000317477 2080 ntTSL 2 BASIC15.66■□□□□ 0.1
CCDC112Q8NEF3 PGM3-201ENST00000283977 2219 ntTSL 5 BASIC15.66■□□□□ 0.1
CCDC112Q8NEF3 C12orf76-201ENST00000309050 1964 ntTSL 2 BASIC15.66■□□□□ 0.1
CCDC112Q8NEF3 SLC24A4-204ENST00000531433 4531 ntAPPRIS ALT2 TSL 2 BASIC15.66■□□□□ 0.1
CCDC112Q8NEF3 SEC14L5-201ENST00000251170 6459 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
CCDC112Q8NEF3 NEK9-201ENST00000238616 8310 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
CCDC112Q8NEF3 BCAM-211ENST00000611077 3430 ntTSL 5 BASIC15.65■□□□□ 0.1
CCDC112Q8NEF3 MPPE1-201ENST00000309976 1636 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
CCDC112Q8NEF3 PCDHGA5-201ENST00000518069 4602 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
CCDC112Q8NEF3 TMEM40-205ENST00000435575 1785 ntAPPRIS ALT2 TSL 2 BASIC15.65■□□□□ 0.1
CCDC112Q8NEF3 LINC00865-202ENST00000448963 4272 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
CCDC112Q8NEF3 MAD1L1-201ENST00000265854 2718 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
CCDC112Q8NEF3 MTHFSD-204ENST00000546093 2451 ntTSL 2 BASIC15.65■□□□□ 0.1
CCDC112Q8NEF3 CKLF-203ENST00000351137 508 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
CCDC112Q8NEF3 C10orf35-201ENST00000373279 1065 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
CCDC112Q8NEF3 IDH3B-202ENST00000380851 1230 ntAPPRIS ALT1 TSL 1 (best) BASIC15.65■□□□□ 0.1
CCDC112Q8NEF3 PUS10-202ENST00000398658 1227 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
CCDC112Q8NEF3 AL807752.4-201ENST00000439076 580 ntTSL 2 BASIC15.65■□□□□ 0.1
CCDC112Q8NEF3 MYCLP2-201ENST00000449268 967 ntBASIC15.65■□□□□ 0.1
CCDC112Q8NEF3 CXCL6-203ENST00000515050 557 ntAPPRIS ALT1 TSL 1 (best) BASIC15.65■□□□□ 0.1
CCDC112Q8NEF3 AC009902.2-201ENST00000518880 620 ntTSL 4 BASIC15.65■□□□□ 0.1
CCDC112Q8NEF3 CCDC25-209ENST00000522915 785 ntTSL 3 BASIC15.65■□□□□ 0.1
CCDC112Q8NEF3 IFITM1-204ENST00000528780 730 ntAPPRIS P1 TSL 3 BASIC15.65■□□□□ 0.1
CCDC112Q8NEF3 CATSPERZ-203ENST00000539943 917 ntAPPRIS ALT2 TSL 2 BASIC15.65■□□□□ 0.1
CCDC112Q8NEF3 LINC02285-201ENST00000557121 943 ntTSL 2 BASIC15.65■□□□□ 0.1
CCDC112Q8NEF3 AL359711.2-201ENST00000563105 872 ntBASIC15.65■□□□□ 0.1
CCDC112Q8NEF3 AC012645.3-203ENST00000567153 520 ntTSL 2 BASIC15.65■□□□□ 0.1
CCDC112Q8NEF3 KSR1-207ENST00000578981 748 ntTSL 4 BASIC15.65■□□□□ 0.1
CCDC112Q8NEF3 AC008750.3-201ENST00000601148 437 ntTSL 5 BASIC15.65■□□□□ 0.1
CCDC112Q8NEF3 TPTE2P2-205ENST00000606711 505 ntTSL 5 BASIC15.65■□□□□ 0.1
CCDC112Q8NEF3 AC004790.1-201ENST00000612686 536 ntBASIC15.65■□□□□ 0.1
CCDC112Q8NEF3 AC002472.3-201ENST00000640124 621 ntBASIC15.65■□□□□ 0.1
CCDC112Q8NEF3 PML-210ENST00000563500 4502 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
CCDC112Q8NEF3 DLGAP1-AS1-201ENST00000317114 1966 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
CCDC112Q8NEF3 SIX1-203ENST00000554986 1959 ntTSL 3 BASIC15.65■□□□□ 0.1
CCDC112Q8NEF3 SCOC-210ENST00000608372 5129 ntAPPRIS P2 TSL 1 (best) BASIC15.65■□□□□ 0.1
CCDC112Q8NEF3 PER3-201ENST00000361923 6203 ntAPPRIS P3 TSL 1 (best) BASIC15.65■□□□□ 0.1
CCDC112Q8NEF3 RIC8B-201ENST00000355478 3207 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
CCDC112Q8NEF3 PLEKHB2-202ENST00000403716 4349 ntTSL 3 BASIC15.65■□□□□ 0.1
CCDC112Q8NEF3 STRA6-222ENST00000616000 2843 ntAPPRIS P1 TSL 2 BASIC15.65■□□□□ 0.1
CCDC112Q8NEF3 ACSF2-202ENST00000427954 2251 ntTSL 2 BASIC15.65■□□□□ 0.1
CCDC112Q8NEF3 CENPK-202ENST00000396679 1734 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
CCDC112Q8NEF3 AC108024.1-201ENST00000626286 1721 ntBASIC15.65■□□□□ 0.1
CCDC112Q8NEF3 ZNF862-201ENST00000223210 6950 ntAPPRIS P1 TSL 5 BASIC15.65■□□□□ 0.1
CCDC112Q8NEF3 SUGP2-203ENST00000452918 6176 ntAPPRIS P3 TSL 1 (best) BASIC15.65■□□□□ 0.1
CCDC112Q8NEF3 IL25-201ENST00000329715 1315 ntAPPRIS P3 TSL 1 (best) BASIC15.65■□□□□ 0.1
CCDC112Q8NEF3 CNKSR3-204ENST00000479339 2023 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
CCDC112Q8NEF3 FOS-201ENST00000303562 2158 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
CCDC112Q8NEF3 PLA1A-204ENST00000488919 1456 ntTSL 2 BASIC15.65■□□□□ 0.1
CCDC112Q8NEF3 FOSB-213ENST00000615753 1468 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
CCDC112Q8NEF3 CDIP1-201ENST00000399599 3009 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
CCDC112Q8NEF3 KCNMA1-285ENST00000640605 3864 ntAPPRIS ALT2 TSL 5 BASIC15.65■□□□□ 0.1
CCDC112Q8NEF3 FCHSD1-209ENST00000522783 2477 ntTSL 5 BASIC15.65■□□□□ 0.1
CCDC112Q8NEF3 STAT3-203ENST00000404395 2633 ntAPPRIS ALT1 TSL 1 (best) BASIC15.64■□□□□ 0.1
CCDC112Q8NEF3 LINC02188-202ENST00000569740 3775 ntTSL 4 BASIC15.64■□□□□ 0.09
CCDC112Q8NEF3 PDE9A-201ENST00000291539 2058 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
CCDC112Q8NEF3 PCMTD1-208ENST00000544451 3697 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
CCDC112Q8NEF3 SLC25A3-217ENST00000552981 1351 ntAPPRIS ALT1 TSL 1 (best) BASIC15.64■□□□□ 0.09
CCDC112Q8NEF3 ENOSF1-209ENST00000580982 1397 ntTSL 5 BASIC15.64■□□□□ 0.09
CCDC112Q8NEF3 TRIM80P-201ENST00000455685 2848 ntBASIC15.64■□□□□ 0.09
CCDC112Q8NEF3 NFATC1-203ENST00000329101 4595 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
CCDC112Q8NEF3 CAD-202ENST00000403525 6900 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
Retrieved 100 of 98,524 protein–RNA pairs in 46.9 ms