Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 AC009690.1-201ENST00000379915 4374 ntAPPRIS P1 TSL 2 BASIC13.63□□□□□ -0.23
COL28A1Q2UY09 SPIN3-204ENST00000638257 4835 ntAPPRIS P1 TSL 5 BASIC13.63□□□□□ -0.23
COL28A1Q2UY09 SLC1A7-206ENST00000620347 2873 ntAPPRIS ALT2 TSL 1 (best) BASIC13.63□□□□□ -0.23
COL28A1Q2UY09 BCAT2-201ENST00000316273 1552 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
COL28A1Q2UY09 CYP4F23P-201ENST00000593402 1579 ntBASIC13.63□□□□□ -0.23
COL28A1Q2UY09 STUM-202ENST00000366789 4093 ntAPPRIS ALT1 TSL 5 BASIC13.63□□□□□ -0.23
COL28A1Q2UY09 ST7L-202ENST00000358039 4528 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
COL28A1Q2UY09 AP002990.1-202ENST00000496634 5064 ntAPPRIS P1 TSL 2 BASIC13.63□□□□□ -0.23
COL28A1Q2UY09 SLC52A3-205ENST00000632431 2694 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
COL28A1Q2UY09 PNMA1-201ENST00000316836 2590 ntAPPRIS P1 BASIC13.63□□□□□ -0.23
COL28A1Q2UY09 FAM84B-201ENST00000304916 5404 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
COL28A1Q2UY09 KIF3C-201ENST00000264712 5344 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
COL28A1Q2UY09 GAD2-203ENST00000376261 5858 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
COL28A1Q2UY09 WASH7P-201ENST00000488147 1351 ntBASIC13.63□□□□□ -0.23
COL28A1Q2UY09 AC009053.1-204ENST00000429810 2355 ntTSL 2 BASIC13.63□□□□□ -0.23
COL28A1Q2UY09 WIPI1-201ENST00000262139 1832 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
COL28A1Q2UY09 FERD3L-201ENST00000275461 640 ntAPPRIS P1 BASIC13.63□□□□□ -0.23
COL28A1Q2UY09 RN7SKP230-201ENST00000365642 335 ntBASIC13.63□□□□□ -0.23
COL28A1Q2UY09 CYB561D1-203ENST00000393709 620 ntAPPRIS ALT1 TSL 4 BASIC13.63□□□□□ -0.23
COL28A1Q2UY09 AF274858.1-201ENST00000406288 372 ntBASIC13.63□□□□□ -0.23
COL28A1Q2UY09 DCAF7-201ENST00000415273 1220 ntTSL 2 BASIC13.63□□□□□ -0.23
COL28A1Q2UY09 AL157407.1-201ENST00000435784 904 ntBASIC13.63□□□□□ -0.23
COL28A1Q2UY09 AP000696.1-201ENST00000457669 1133 ntTSL 3 BASIC13.63□□□□□ -0.23
COL28A1Q2UY09 AC106047.1-202ENST00000467484 482 ntTSL 2 BASIC13.63□□□□□ -0.23
COL28A1Q2UY09 CALCA-205ENST00000486207 851 ntAPPRIS P1 TSL 5 BASIC13.63□□□□□ -0.23
COL28A1Q2UY09 WNT5A-205ENST00000497027 1299 ntTSL 2 BASIC13.63□□□□□ -0.23
COL28A1Q2UY09 AC009779.3-204ENST00000549424 367 ntTSL 3 BASIC13.63□□□□□ -0.23
COL28A1Q2UY09 AC007656.1-201ENST00000552238 573 ntTSL 4 BASIC13.63□□□□□ -0.23
COL28A1Q2UY09 ZNF175-204ENST00000596504 580 ntTSL 2 BASIC13.63□□□□□ -0.23
COL28A1Q2UY09 PGPEP1-206ENST00000597431 545 ntTSL 5 BASIC13.63□□□□□ -0.23
COL28A1Q2UY09 AC140113.1-201ENST00000603467 169 ntBASIC13.63□□□□□ -0.23
COL28A1Q2UY09 AC006483.2-201ENST00000609813 515 ntBASIC13.63□□□□□ -0.23
COL28A1Q2UY09 PAX4-207ENST00000611453 1235 ntTSL 5 BASIC13.63□□□□□ -0.23
COL28A1Q2UY09 AC011462.4-201ENST00000616866 449 ntBASIC13.63□□□□□ -0.23
COL28A1Q2UY09 MIR6125-201ENST00000618986 96 ntBASIC13.63□□□□□ -0.23
COL28A1Q2UY09 IQSEC2-207ENST00000638583 722 ntTSL 5 BASIC13.63□□□□□ -0.23
COL28A1Q2UY09 FAM107A-206ENST00000474531 2271 ntTSL 2 BASIC13.63□□□□□ -0.23
COL28A1Q2UY09 PVR-202ENST00000344956 3166 ntAPPRIS ALT2 TSL 5 BASIC13.63□□□□□ -0.23
COL28A1Q2UY09 FGD4-203ENST00000472289 1629 ntTSL 2 BASIC13.63□□□□□ -0.23
COL28A1Q2UY09 DGCR9-201ENST00000609630 2415 ntBASIC13.63□□□□□ -0.23
COL28A1Q2UY09 ZNF586-202ENST00000396150 1977 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
COL28A1Q2UY09 MSI2-202ENST00000322684 1860 ntAPPRIS ALT2 TSL 2 BASIC13.63□□□□□ -0.23
COL28A1Q2UY09 RMND1-202ENST00000367303 1854 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
COL28A1Q2UY09 SMARCA2-214ENST00000450198 5602 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
COL28A1Q2UY09 SCAP-206ENST00000428413 3749 ntTSL 5 BASIC13.63□□□□□ -0.23
COL28A1Q2UY09 PBX3-203ENST00000373487 2902 ntTSL 5 BASIC13.63□□□□□ -0.23
COL28A1Q2UY09 CALD1-206ENST00000424922 2124 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
COL28A1Q2UY09 JKAMP-207ENST00000554271 2137 ntTSL 2 BASIC13.63□□□□□ -0.23
COL28A1Q2UY09 LAMP5-202ENST00000427562 1309 ntTSL 2 BASIC13.63□□□□□ -0.23
COL28A1Q2UY09 KIAA0319-204ENST00000537886 6622 ntAPPRIS ALT2 TSL 1 (best) BASIC13.63□□□□□ -0.23
COL28A1Q2UY09 AL356585.2-201ENST00000625078 2396 ntBASIC13.63□□□□□ -0.23
COL28A1Q2UY09 WLS-201ENST00000262348 2748 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
COL28A1Q2UY09 EFNB1-201ENST00000204961 3314 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
COL28A1Q2UY09 TMEM230-202ENST00000342308 1562 ntTSL 2 BASIC13.62□□□□□ -0.23
COL28A1Q2UY09 AC025674.2-201ENST00000522622 2971 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
COL28A1Q2UY09 ILF2-205ENST00000615950 1906 ntTSL 2 BASIC13.62□□□□□ -0.23
COL28A1Q2UY09 PAPD7-207ENST00000631941 1902 ntAPPRIS P1 TSL 5 BASIC13.62□□□□□ -0.23
COL28A1Q2UY09 RAPGEF4-201ENST00000397081 4299 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
COL28A1Q2UY09 GPR68-203ENST00000531499 2859 ntAPPRIS P2 TSL 1 (best) BASIC13.62□□□□□ -0.23
COL28A1Q2UY09 PRNP-203ENST00000430350 2539 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
COL28A1Q2UY09 PBX3-201ENST00000342287 2755 ntAPPRIS ALT1 TSL 5 BASIC13.62□□□□□ -0.23
COL28A1Q2UY09 FGD2-201ENST00000274963 3046 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
COL28A1Q2UY09 PCDHA7-201ENST00000356878 2922 ntAPPRIS ALT2 BASIC13.62□□□□□ -0.23
COL28A1Q2UY09 KCNH6-202ENST00000456941 2928 ntTSL 5 BASIC13.62□□□□□ -0.23
COL28A1Q2UY09 HERPUD1-202ENST00000344114 1388 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
COL28A1Q2UY09 DEPTOR-201ENST00000286234 2569 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
COL28A1Q2UY09 GTF2IRD1-201ENST00000265755 3430 ntAPPRIS P3 TSL 1 (best) BASIC13.62□□□□□ -0.23
COL28A1Q2UY09 CUL1-201ENST00000325222 3064 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
COL28A1Q2UY09 SUGP2-214ENST00000600377 4752 ntAPPRIS ALT2 TSL 2 BASIC13.62□□□□□ -0.23
COL28A1Q2UY09 JADE2-203ENST00000395003 6465 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
COL28A1Q2UY09 NUDT2-201ENST00000346365 960 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
COL28A1Q2UY09 TMBIM4-202ENST00000358230 2952 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
COL28A1Q2UY09 NCR3-204ENST00000376073 1097 ntAPPRIS ALT2 TSL 1 (best) BASIC13.62□□□□□ -0.23
COL28A1Q2UY09 NUDT2-202ENST00000379155 1002 ntAPPRIS P1 TSL 3 BASIC13.62□□□□□ -0.23
COL28A1Q2UY09 MAPK3-204ENST00000395200 997 ntTSL 3 BASIC13.62□□□□□ -0.23
COL28A1Q2UY09 VENTXP4-201ENST00000449029 958 ntBASIC13.62□□□□□ -0.23
COL28A1Q2UY09 RN7SL582P-201ENST00000491078 279 ntBASIC13.62□□□□□ -0.23
COL28A1Q2UY09 AC011773.1-201ENST00000520129 468 ntTSL 5 BASIC13.62□□□□□ -0.23
COL28A1Q2UY09 HDAC2-AS2-213ENST00000520891 603 ntTSL 4 BASIC13.62□□□□□ -0.23
COL28A1Q2UY09 AC226150.1-201ENST00000544259 466 ntBASIC13.62□□□□□ -0.23
COL28A1Q2UY09 AC010186.1-201ENST00000546259 532 ntTSL 2 BASIC13.62□□□□□ -0.23
COL28A1Q2UY09 AC124068.2-202ENST00000562356 612 ntTSL 3 BASIC13.62□□□□□ -0.23
COL28A1Q2UY09 APOC4-202ENST00000592954 615 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
COL28A1Q2UY09 AC006547.3-201ENST00000600090 583 ntTSL 3 BASIC13.62□□□□□ -0.23
COL28A1Q2UY09 FXYD3-204ENST00000603181 758 ntAPPRIS P1 TSL 3 BASIC13.62□□□□□ -0.23
COL28A1Q2UY09 NPIPB11-202ENST00000614927 1216 ntTSL 5 BASIC13.62□□□□□ -0.23
COL28A1Q2UY09 NUDT2-204ENST00000618590 825 ntAPPRIS P1 TSL 3 BASIC13.62□□□□□ -0.23
COL28A1Q2UY09 AC110057.1-201ENST00000636031 898 ntBASIC13.62□□□□□ -0.23
COL28A1Q2UY09 ACVR1B-206ENST00000542485 2362 ntTSL 2 BASIC13.62□□□□□ -0.23
COL28A1Q2UY09 CTCFL-210ENST00000481655 1512 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
COL28A1Q2UY09 NFIX-208ENST00000587260 1537 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
COL28A1Q2UY09 TMBIM7P-202ENST00000641474 1516 ntBASIC13.62□□□□□ -0.23
COL28A1Q2UY09 CGN-201ENST00000271636 5091 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
COL28A1Q2UY09 TDRD10-201ENST00000368480 1776 ntAPPRIS ALT2 TSL 2 BASIC13.62□□□□□ -0.23
COL28A1Q2UY09 TOMM22-201ENST00000216034 2040 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
COL28A1Q2UY09 CERS3-202ENST00000394113 2045 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
COL28A1Q2UY09 SH3KBP1-201ENST00000379697 1944 ntTSL 5 BASIC13.62□□□□□ -0.23
COL28A1Q2UY09 SCAF11-204ENST00000395454 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC13.62□□□□□ -0.23
COL28A1Q2UY09 CFAP52-202ENST00000396219 1912 ntTSL 2 BASIC13.62□□□□□ -0.23
COL28A1Q2UY09 GDPD2-204ENST00000536730 2171 ntTSL 2 BASIC13.62□□□□□ -0.23
Retrieved 100 of 98,524 protein–RNA pairs in 34.7 ms