Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 POLM-201ENST00000242248 2631 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
FOXA1P55317 OS9-203ENST00000389142 2457 ntTSL 5 BASIC13.68□□□□□ -0.22
FOXA1P55317 ID2-203ENST00000396290 1362 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
FOXA1P55317 NKX2-1-AS1-201ENST00000521292 1775 ntTSL 2 BASIC13.68□□□□□ -0.22
FOXA1P55317 HEXA-206ENST00000566304 1795 ntTSL 2 BASIC13.68□□□□□ -0.22
FOXA1P55317 AMT-256ENST00000638063 1783 ntTSL 5 BASIC13.68□□□□□ -0.22
FOXA1P55317 BEGAIN-212ENST00000637716 3259 ntAPPRIS P5 TSL 5 BASIC13.68□□□□□ -0.22
FOXA1P55317 AP001999.1-201ENST00000513405 3684 ntTSL 2 BASIC13.68□□□□□ -0.22
FOXA1P55317 SYNGAP1-203ENST00000428982 4339 ntTSL 5 BASIC13.68□□□□□ -0.22
FOXA1P55317 CDCA7-203ENST00000410019 1488 ntTSL 2 BASIC13.67□□□□□ -0.22
FOXA1P55317 MANEA-AS1-201ENST00000564541 2268 ntBASIC13.67□□□□□ -0.22
FOXA1P55317 ATG9B-203ENST00000469530 3489 ntAPPRIS P1 TSL 5 BASIC13.67□□□□□ -0.22
FOXA1P55317 MAP7-202ENST00000432797 4375 ntAPPRIS ALT2 TSL 2 BASIC13.67□□□□□ -0.22
FOXA1P55317 SLC6A10P-201ENST00000330048 3846 ntTSL 2 BASIC13.67□□□□□ -0.22
FOXA1P55317 ACTN4-203ENST00000424234 1566 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
FOXA1P55317 DRD3-203ENST00000460779 1557 ntAPPRIS P3 TSL 2 BASIC13.67□□□□□ -0.22
FOXA1P55317 GPD1-205ENST00000548814 1591 ntTSL 2 BASIC13.67□□□□□ -0.22
FOXA1P55317 AL139158.3-201ENST00000641212 1562 ntBASIC13.67□□□□□ -0.22
FOXA1P55317 ASAP3-202ENST00000437606 2865 ntAPPRIS ALT2 TSL 2 BASIC13.67□□□□□ -0.22
FOXA1P55317 TMCC3-201ENST00000261226 5877 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
FOXA1P55317 AC026271.4-201ENST00000578214 1833 ntBASIC13.67□□□□□ -0.22
FOXA1P55317 RAB40A-202ENST00000372633 3126 ntAPPRIS P1 BASIC13.67□□□□□ -0.22
FOXA1P55317 POM121-202ENST00000395270 7011 ntAPPRIS ALT2 TSL 1 (best) BASIC13.67□□□□□ -0.22
FOXA1P55317 AC115284.2-201ENST00000624646 2054 ntBASIC13.67□□□□□ -0.22
FOXA1P55317 NLRP7-207ENST00000590030 3209 ntAPPRIS ALT2 TSL 1 (best) BASIC13.67□□□□□ -0.22
FOXA1P55317 PCDHGA11-201ENST00000398587 4647 ntAPPRIS P3 TSL 1 (best) BASIC13.67□□□□□ -0.22
FOXA1P55317 PLEKHD1-201ENST00000322564 4865 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
FOXA1P55317 FBXL19-201ENST00000338343 3965 ntAPPRIS ALT2 TSL 5 BASIC13.67□□□□□ -0.22
FOXA1P55317 HAGLR-202ENST00000416928 4235 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
FOXA1P55317 GBGT1-202ENST00000372038 847 ntTSL 3 BASIC13.67□□□□□ -0.22
FOXA1P55317 LCMT1-202ENST00000380966 989 ntTSL 2 BASIC13.67□□□□□ -0.22
FOXA1P55317 GTF2A2-204ENST00000396063 970 ntAPPRIS P1 TSL 2 BASIC13.67□□□□□ -0.22
FOXA1P55317 GTF2A2-205ENST00000396064 633 ntTSL 3 BASIC13.67□□□□□ -0.22
FOXA1P55317 SPEG-202ENST00000396686 1086 ntTSL 3 BASIC13.67□□□□□ -0.22
FOXA1P55317 SUMF2-205ENST00000413756 1171 ntAPPRIS ALT2 TSL 5 BASIC13.67□□□□□ -0.22
FOXA1P55317 AL136311.1-206ENST00000416069 899 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
FOXA1P55317 RPUSD3-204ENST00000424438 1005 ntTSL 2 BASIC13.67□□□□□ -0.22
FOXA1P55317 LINC00441-201ENST00000433480 1143 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
FOXA1P55317 RALY-AS1-203ENST00000440595 660 ntTSL 3 BASIC13.67□□□□□ -0.22
FOXA1P55317 FKBP11-202ENST00000444214 630 ntTSL 2 BASIC13.67□□□□□ -0.22
FOXA1P55317 USE1-202ENST00000445667 795 ntAPPRIS ALT1 TSL 5 BASIC13.67□□□□□ -0.22
FOXA1P55317 COX20P2-201ENST00000452636 358 ntBASIC13.67□□□□□ -0.22
FOXA1P55317 GTF2A2-208ENST00000484743 408 ntTSL 2 BASIC13.67□□□□□ -0.22
FOXA1P55317 AC119751.2-201ENST00000504529 210 ntBASIC13.67□□□□□ -0.22
FOXA1P55317 AC080188.2-201ENST00000508985 552 ntTSL 4 BASIC13.67□□□□□ -0.22
FOXA1P55317 LINC02387-201ENST00000541749 868 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
FOXA1P55317 AP000438.1-201ENST00000543624 749 ntTSL 3 BASIC13.67□□□□□ -0.22
FOXA1P55317 AL163636.1-201ENST00000554286 915 ntTSL 5 BASIC13.67□□□□□ -0.22
FOXA1P55317 AC020911.1-201ENST00000591038 578 ntTSL 2 BASIC13.67□□□□□ -0.22
FOXA1P55317 MRPL34-203ENST00000595444 863 ntAPPRIS ALT2 TSL 3 BASIC13.67□□□□□ -0.22
FOXA1P55317 AC009542.2-202ENST00000619004 1067 ntBASIC13.67□□□□□ -0.22
FOXA1P55317 SPN-201ENST00000360121 6894 ntAPPRIS P2 TSL 1 (best) BASIC13.67□□□□□ -0.22
FOXA1P55317 SLC39A6-204ENST00000590986 3003 ntAPPRIS P3 TSL 5 BASIC13.67□□□□□ -0.22
FOXA1P55317 SYNE3-201ENST00000334258 3275 ntAPPRIS P2 TSL 1 (best) BASIC13.67□□□□□ -0.22
FOXA1P55317 GRIN1-204ENST00000371553 3751 ntAPPRIS P4 TSL 1 (best) BASIC13.67□□□□□ -0.22
FOXA1P55317 UBA2-201ENST00000246548 4023 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
FOXA1P55317 ORC6-201ENST00000219097 1628 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
FOXA1P55317 MOGAT3-201ENST00000223114 2132 ntAPPRIS P2 TSL 1 (best) BASIC13.67□□□□□ -0.22
FOXA1P55317 GFRA2-202ENST00000517328 2104 ntAPPRIS P1 TSL 5 BASIC13.67□□□□□ -0.22
FOXA1P55317 TBC1D3L-201ENST00000612727 2148 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
FOXA1P55317 GFI1B-207ENST00000636137 1870 ntTSL 5 BASIC13.67□□□□□ -0.22
FOXA1P55317 CD276-202ENST00000318443 3469 ntAPPRIS P2 TSL 2 BASIC13.67□□□□□ -0.22
FOXA1P55317 AGBL3-202ENST00000435976 2495 ntTSL 5 BASIC13.67□□□□□ -0.22
FOXA1P55317 MYH14-201ENST00000262269 3848 ntTSL 5 BASIC13.67□□□□□ -0.22
FOXA1P55317 AGAP2-203ENST00000547588 3579 ntAPPRIS ALT2 TSL 1 (best) BASIC13.67□□□□□ -0.22
FOXA1P55317 SLC35F2-203ENST00000525071 3331 ntAPPRIS ALT2 TSL 2 BASIC13.67□□□□□ -0.22
FOXA1P55317 RPL13AP3-202ENST00000494676 1473 ntBASIC13.67□□□□□ -0.22
FOXA1P55317 ACP2-205ENST00000527256 1499 ntTSL 2 BASIC13.67□□□□□ -0.22
FOXA1P55317 PARP3-201ENST00000398755 2336 ntAPPRIS ALT2 TSL 1 (best) BASIC13.67□□□□□ -0.22
FOXA1P55317 LSM14A-201ENST00000433627 3424 ntAPPRIS ALT1 TSL 1 (best) BASIC13.67□□□□□ -0.22
FOXA1P55317 C3orf33-205ENST00000534941 1804 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
FOXA1P55317 AAR2-202ENST00000373932 2689 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
FOXA1P55317 DRD2-201ENST00000346454 2433 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
FOXA1P55317 FXYD5-201ENST00000342879 1580 ntAPPRIS P2 TSL 1 (best) BASIC13.66□□□□□ -0.22
FOXA1P55317 GK-205ENST00000378946 3638 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
FOXA1P55317 SPIN3-204ENST00000638257 4835 ntAPPRIS P1 TSL 5 BASIC13.66□□□□□ -0.22
FOXA1P55317 RTN3-210ENST00000540798 3124 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
FOXA1P55317 MMP14-201ENST00000311852 3732 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
FOXA1P55317 UBE2V1-224ENST00000625172 2297 ntTSL 4 BASIC13.66□□□□□ -0.22
FOXA1P55317 INPPL1-213ENST00000541756 4649 ntTSL 5 BASIC13.66□□□□□ -0.22
FOXA1P55317 TPM2-204ENST00000378300 1771 ntTSL 3 BASIC13.66□□□□□ -0.22
FOXA1P55317 SPDYA-202ENST00000379579 1759 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
FOXA1P55317 CSNK1A1P1-201ENST00000430593 2147 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
FOXA1P55317 FDFT1-223ENST00000615631 2462 ntAPPRIS P1 TSL 5 BASIC13.66□□□□□ -0.22
FOXA1P55317 PPARGC1B-203ENST00000394320 4803 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
FOXA1P55317 WDSUB1-201ENST00000358147 1535 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
FOXA1P55317 ADAMTS14-201ENST00000373207 5260 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.22
FOXA1P55317 IFT81-202ENST00000361948 3048 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
FOXA1P55317 ANO7-202ENST00000402430 2652 ntAPPRIS ALT2 TSL 5 BASIC13.66□□□□□ -0.22
FOXA1P55317 MRPL32-201ENST00000223324 1035 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
FOXA1P55317 WASHC3-201ENST00000240079 916 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
FOXA1P55317 APOD-201ENST00000343267 1130 ntAPPRIS P2 TSL 1 (best) BASIC13.66□□□□□ -0.22
FOXA1P55317 FOLR1-202ENST00000393676 996 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
FOXA1P55317 SKA1-202ENST00000398452 979 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
FOXA1P55317 PRKG1-AS1-201ENST00000420193 971 ntTSL 3 BASIC13.66□□□□□ -0.22
FOXA1P55317 LINC01762-204ENST00000434879 436 ntTSL 2 BASIC13.66□□□□□ -0.22
FOXA1P55317 LINC00686-201ENST00000435412 332 ntTSL 3 BASIC13.66□□□□□ -0.22
FOXA1P55317 TUBB8P8-201ENST00000458717 1058 ntBASIC13.66□□□□□ -0.22
FOXA1P55317 NAA50-208ENST00000497255 789 ntTSL 5 BASIC13.66□□□□□ -0.22
FOXA1P55317 AC132803.1-201ENST00000504204 493 ntTSL 2 BASIC13.66□□□□□ -0.22
Retrieved 100 of 98,524 protein–RNA pairs in 62.4 ms