Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 SLC8B1-202ENST00000546737 1656 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
HOXA1P49639 SPTB-202ENST00000389720 6321 ntTSL 5 BASIC11.83□□□□□ -0.52
HOXA1P49639 KANK4-201ENST00000317477 2080 ntTSL 2 BASIC11.83□□□□□ -0.52
HOXA1P49639 AC009501.1-201ENST00000429952 2069 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
HOXA1P49639 CLIC5-208ENST00000544153 2051 ntTSL 2 BASIC11.83□□□□□ -0.52
HOXA1P49639 NOX4-207ENST00000525196 1555 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
HOXA1P49639 DGCR2-201ENST00000263196 4480 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
HOXA1P49639 DGCR2-206ENST00000545799 4484 ntTSL 5 BASIC11.83□□□□□ -0.52
HOXA1P49639 C19orf12-208ENST00000614091 4489 ntAPPRIS P1 TSL 4 BASIC11.83□□□□□ -0.52
HOXA1P49639 LDB3-205ENST00000429277 5436 ntTSL 2 BASIC11.83□□□□□ -0.52
HOXA1P49639 MAOA-204ENST00000542639 5438 ntTSL 2 BASIC11.83□□□□□ -0.52
HOXA1P49639 ODF3-201ENST00000325113 1307 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
HOXA1P49639 HPD-204ENST00000543163 1709 ntTSL 5 BASIC11.83□□□□□ -0.52
HOXA1P49639 RAPGEF6-207ENST00000507093 5742 ntAPPRIS ALT1 TSL 1 (best) BASIC11.83□□□□□ -0.52
HOXA1P49639 ANKRD52-201ENST00000267116 8688 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
HOXA1P49639 AC239809.3-201ENST00000599640 4266 ntTSL 5 BASIC11.83□□□□□ -0.52
HOXA1P49639 SEZ6L-201ENST00000248933 3248 ntAPPRIS P3 TSL 1 (best) BASIC11.82□□□□□ -0.52
HOXA1P49639 SEZ6L-210ENST00000629590 3215 ntAPPRIS ALT2 TSL 1 (best) BASIC11.82□□□□□ -0.52
HOXA1P49639 CICP18-201ENST00000406017 2812 ntBASIC11.82□□□□□ -0.52
HOXA1P49639 AL162431.2-201ENST00000358073 2424 ntTSL 2 BASIC11.82□□□□□ -0.52
HOXA1P49639 MIEF2-201ENST00000323019 3364 ntAPPRIS P1 TSL 2 BASIC11.82□□□□□ -0.52
HOXA1P49639 ELF3-202ENST00000367283 2044 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
HOXA1P49639 DNAH2-202ENST00000570791 2994 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
HOXA1P49639 MAGEB2-201ENST00000378988 1610 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
HOXA1P49639 TRAPPC9-201ENST00000389328 4474 ntTSL 2 BASIC11.82□□□□□ -0.52
HOXA1P49639 ZNF71-201ENST00000328070 5428 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
HOXA1P49639 ZNF621-202ENST00000339296 6378 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
HOXA1P49639 AC091170.1-201ENST00000582983 2190 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
HOXA1P49639 PLIN3-207ENST00000592528 2154 ntTSL 2 BASIC11.82□□□□□ -0.52
HOXA1P49639 TNFRSF21-201ENST00000296861 3595 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
HOXA1P49639 ING4-202ENST00000396807 1393 ntAPPRIS ALT1 TSL 1 (best) BASIC11.82□□□□□ -0.52
HOXA1P49639 ACSL1-208ENST00000507295 2490 ntTSL 2 BASIC11.82□□□□□ -0.52
HOXA1P49639 DHX30-215ENST00000619982 3574 ntAPPRIS ALT1 TSL 5 BASIC11.82□□□□□ -0.52
HOXA1P49639 PAX6-207ENST00000379129 2614 ntAPPRIS P4 TSL 5 BASIC11.82□□□□□ -0.52
HOXA1P49639 STAT3-203ENST00000404395 2633 ntAPPRIS ALT1 TSL 1 (best) BASIC11.82□□□□□ -0.52
HOXA1P49639 STRIP2-201ENST00000249344 5115 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
HOXA1P49639 CYTH1-201ENST00000361101 3311 ntAPPRIS ALT1 TSL 1 (best) BASIC11.82□□□□□ -0.52
HOXA1P49639 CYTH1-202ENST00000446868 3311 ntAPPRIS ALT1 TSL 5 BASIC11.82□□□□□ -0.52
HOXA1P49639 LINC01648-201ENST00000445180 1519 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
HOXA1P49639 CREBZF-204ENST00000527447 4037 ntAPPRIS P1 BASIC11.82□□□□□ -0.52
HOXA1P49639 ZNF7-202ENST00000446747 2242 ntAPPRIS ALT2 TSL 1 (best) BASIC11.82□□□□□ -0.52
HOXA1P49639 IKBKG-208ENST00000611176 1654 ntTSL 2 BASIC11.82□□□□□ -0.52
HOXA1P49639 POLG-202ENST00000442287 4487 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
HOXA1P49639 GPR55-205ENST00000622008 2526 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
HOXA1P49639 TSPAN31-201ENST00000257910 1849 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
HOXA1P49639 EVA1A-202ENST00000393913 1802 ntAPPRIS P2 TSL 1 (best) BASIC11.82□□□□□ -0.52
HOXA1P49639 HSP90AA1-201ENST00000216281 3379 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
HOXA1P49639 KLC4-201ENST00000259708 2688 ntAPPRIS P4 TSL 2 BASIC11.82□□□□□ -0.52
HOXA1P49639 GRAMD1B-215ENST00000638086 2665 ntTSL 5 BASIC11.82□□□□□ -0.52
HOXA1P49639 WDR47-204ENST00000369965 4240 ntAPPRIS P3 TSL 1 (best) BASIC11.82□□□□□ -0.52
HOXA1P49639 AC009336.2-201ENST00000468418 3521 ntAPPRIS P1 TSL 5 BASIC11.82□□□□□ -0.52
HOXA1P49639 NPM2-201ENST00000289820 1100 ntAPPRIS P2 TSL 1 (best) BASIC11.82□□□□□ -0.52
HOXA1P49639 TSFM-201ENST00000323833 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC11.82□□□□□ -0.52
HOXA1P49639 KCNK7-201ENST00000340313 1298 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
HOXA1P49639 H3F3C-201ENST00000340398 1057 ntAPPRIS P1 BASIC11.82□□□□□ -0.52
HOXA1P49639 WLS-203ENST00000370971 700 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
HOXA1P49639 MFAP2-201ENST00000375534 970 ntAPPRIS P1 TSL 2 BASIC11.82□□□□□ -0.52
HOXA1P49639 KRTAP1-4-201ENST00000377747 408 ntAPPRIS P1 BASIC11.82□□□□□ -0.52
HOXA1P49639 NPM2-202ENST00000381530 925 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
HOXA1P49639 TRIM74-202ENST00000395244 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC11.82□□□□□ -0.52
HOXA1P49639 GATD1-203ENST00000397472 790 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
HOXA1P49639 PON3-203ENST00000427422 894 ntTSL 3 BASIC11.82□□□□□ -0.52
HOXA1P49639 RNASE10-202ENST00000430083 1172 ntTSL 2 BASIC11.82□□□□□ -0.52
HOXA1P49639 TRIM73-204ENST00000447409 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC11.82□□□□□ -0.52
HOXA1P49639 AC093214.1-201ENST00000511688 1107 ntBASIC11.82□□□□□ -0.52
HOXA1P49639 AC136475.2-201ENST00000526612 392 ntTSL 3 BASIC11.82□□□□□ -0.52
HOXA1P49639 TMEM218-210ENST00000529609 734 ntTSL 3 BASIC11.82□□□□□ -0.52
HOXA1P49639 TMEM63A-209ENST00000537914 1018 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
HOXA1P49639 AL359711.2-201ENST00000563105 872 ntBASIC11.82□□□□□ -0.52
HOXA1P49639 AC068473.4-201ENST00000587527 585 ntTSL 4 BASIC11.82□□□□□ -0.52
HOXA1P49639 ZNF83-215ENST00000600714 810 ntTSL 3 BASIC11.82□□□□□ -0.52
HOXA1P49639 AL022328.4-201ENST00000608025 1001 ntTSL 2 BASIC11.82□□□□□ -0.52
HOXA1P49639 AC093726.1-201ENST00000608064 963 ntBASIC11.82□□□□□ -0.52
HOXA1P49639 STXBP2-222ENST00000612033 1188 ntTSL 5 BASIC11.82□□□□□ -0.52
HOXA1P49639 METTL26-214ENST00000614890 801 ntTSL 3 BASIC11.82□□□□□ -0.52
HOXA1P49639 AC244153.1-202ENST00000617855 482 ntTSL 3 BASIC11.82□□□□□ -0.52
HOXA1P49639 IDO2-204ENST00000502986 2294 ntTSL 5 BASIC11.82□□□□□ -0.52
HOXA1P49639 SLC27A6-203ENST00000506176 2294 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
HOXA1P49639 PDE8B-203ENST00000340978 3426 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
HOXA1P49639 HS3ST1-201ENST00000002596 8031 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
HOXA1P49639 VAV1-207ENST00000599806 2717 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
HOXA1P49639 HIF3A-206ENST00000472815 1709 ntTSL 2 BASIC11.82□□□□□ -0.52
HOXA1P49639 CACNA2D2-205ENST00000429770 5304 ntAPPRIS ALT2 TSL 5 BASIC11.82□□□□□ -0.52
HOXA1P49639 CCNA1-201ENST00000255465 1879 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
HOXA1P49639 EHD1-213ENST00000621096 3336 ntTSL 5 BASIC11.82□□□□□ -0.52
HOXA1P49639 VDR-201ENST00000229022 4773 ntAPPRIS P1 TSL 5 BASIC11.82□□□□□ -0.52
HOXA1P49639 DNMT3B-206ENST00000456297 2315 ntTSL 2 BASIC11.82□□□□□ -0.52
HOXA1P49639 IL12RB1-203ENST00000593993 2782 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
HOXA1P49639 KIF6-201ENST00000229913 1330 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
HOXA1P49639 KRT18P28-201ENST00000453838 1332 ntBASIC11.82□□□□□ -0.52
HOXA1P49639 KRT8P35-201ENST00000483942 1338 ntBASIC11.82□□□□□ -0.52
HOXA1P49639 KLHDC3-203ENST00000332245 1494 ntTSL 2 BASIC11.82□□□□□ -0.52
HOXA1P49639 ACSL4-202ENST00000348502 5032 ntAPPRIS ALT1 TSL 1 (best) BASIC11.82□□□□□ -0.52
HOXA1P49639 ALDH3A1-201ENST00000225740 1779 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
HOXA1P49639 VRK3-201ENST00000316763 1938 ntAPPRIS P3 TSL 1 (best) BASIC11.82□□□□□ -0.52
HOXA1P49639 RGS9-201ENST00000262406 2375 ntAPPRIS P3 TSL 1 (best) BASIC11.82□□□□□ -0.52
HOXA1P49639 SUOX-204ENST00000394115 2394 ntAPPRIS P1 TSL 2 BASIC11.82□□□□□ -0.52
HOXA1P49639 LINC00894-206ENST00000450989 2361 ntTSL 2 BASIC11.82□□□□□ -0.52
HOXA1P49639 PID1-203ENST00000392055 2533 ntAPPRIS P1 TSL 2 BASIC11.82□□□□□ -0.52
HOXA1P49639 BRAP-202ENST00000419234 4026 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Retrieved 100 of 98,524 protein–RNA pairs in 38.4 ms