Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 TPM3-208ENST00000341485 2063 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
COL9A1P20849 FAM189B-202ENST00000361361 3082 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
COL9A1P20849 FAM214B-202ENST00000378557 3070 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
COL9A1P20849 CADPS2-204ENST00000412584 4308 ntAPPRIS P2 TSL 1 (best) BASIC14.43□□□□□ -0.1
COL9A1P20849 USP35-204ENST00000530267 2419 ntTSL 2 BASIC14.43□□□□□ -0.1
COL9A1P20849 FXYD6-201ENST00000260282 1929 ntAPPRIS P2 TSL 1 (best) BASIC14.43□□□□□ -0.1
COL9A1P20849 PRICKLE3-204ENST00000453382 1937 ntAPPRIS ALT2 TSL 5 BASIC14.43□□□□□ -0.1
COL9A1P20849 RNF34-211ENST00000613529 1449 ntTSL 2 BASIC14.43□□□□□ -0.1
COL9A1P20849 BCL11B-202ENST00000357195 7559 ntAPPRIS P4 TSL 1 (best) BASIC14.43□□□□□ -0.1
COL9A1P20849 SLC22A7-203ENST00000372589 2549 ntAPPRIS ALT2 TSL 2 BASIC14.43□□□□□ -0.1
COL9A1P20849 GLS2-217ENST00000623608 2518 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
COL9A1P20849 SERTAD4-201ENST00000367012 5219 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
COL9A1P20849 AC067931.2-201ENST00000623655 2003 ntBASIC14.43□□□□□ -0.1
COL9A1P20849 AC092384.3-202ENST00000564646 2873 ntBASIC14.43□□□□□ -0.1
COL9A1P20849 MSRA-201ENST00000317173 1536 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
COL9A1P20849 DNAJA1-201ENST00000330899 2381 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
COL9A1P20849 TM4SF4-201ENST00000305354 2101 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
COL9A1P20849 TNNT1-202ENST00000356783 934 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
COL9A1P20849 IGHV4-39-201ENST00000390619 425 ntAPPRIS P1 BASIC14.43□□□□□ -0.1
COL9A1P20849 PSG5-207ENST00000407568 1064 ntTSL 2 BASIC14.43□□□□□ -0.1
COL9A1P20849 AL359853.1-202ENST00000415218 544 ntTSL 2 BASIC14.43□□□□□ -0.1
COL9A1P20849 BX005214.2-201ENST00000423499 1077 ntTSL 5 BASIC14.43□□□□□ -0.1
COL9A1P20849 AL590399.1-204ENST00000430302 781 ntTSL 5 BASIC14.43□□□□□ -0.1
COL9A1P20849 AL592301.1-201ENST00000439501 864 ntTSL 3 BASIC14.43□□□□□ -0.1
COL9A1P20849 AC074389.3-201ENST00000450458 454 ntTSL 3 BASIC14.43□□□□□ -0.1
COL9A1P20849 AC068057.1-201ENST00000453322 709 ntTSL 2 BASIC14.43□□□□□ -0.1
COL9A1P20849 CU639417.1-201ENST00000464664 460 ntAPPRIS P1 BASIC14.43□□□□□ -0.1
COL9A1P20849 HNRNPA3P6-201ENST00000472163 1006 ntBASIC14.43□□□□□ -0.1
COL9A1P20849 LRRC75A-AS1-214ENST00000487066 763 ntTSL 3 BASIC14.43□□□□□ -0.1
COL9A1P20849 AC079340.2-201ENST00000504957 495 ntTSL 2 BASIC14.43□□□□□ -0.1
COL9A1P20849 OR52V1P-201ENST00000515557 898 ntBASIC14.43□□□□□ -0.1
COL9A1P20849 AACSP1-202ENST00000521412 1095 ntBASIC14.43□□□□□ -0.1
COL9A1P20849 AC022616.2-201ENST00000523185 300 ntBASIC14.43□□□□□ -0.1
COL9A1P20849 AC073896.3-201ENST00000546789 437 ntTSL 5 BASIC14.43□□□□□ -0.1
COL9A1P20849 ORMDL2-205ENST00000552672 760 ntTSL 2 BASIC14.43□□□□□ -0.1
COL9A1P20849 BCL2L2-PABPN1-201ENST00000553781 1241 ntAPPRIS P1 TSL 2 BASIC14.43□□□□□ -0.1
COL9A1P20849 AC114488.2-208ENST00000591592 578 ntTSL 5 BASIC14.43□□□□□ -0.1
COL9A1P20849 ADGRE3-204ENST00000595472 486 ntTSL 3 BASIC14.43□□□□□ -0.1
COL9A1P20849 H2BFS-201ENST00000599962 460 ntAPPRIS P1 BASIC14.43□□□□□ -0.1
COL9A1P20849 MIR6749-201ENST00000617008 69 ntBASIC14.43□□□□□ -0.1
COL9A1P20849 AC009041.4-201ENST00000620075 638 ntBASIC14.43□□□□□ -0.1
COL9A1P20849 GMEB1-202ENST00000361872 1894 ntAPPRIS ALT1 TSL 1 (best) BASIC14.43□□□□□ -0.1
COL9A1P20849 AL591122.2-201ENST00000624125 1853 ntBASIC14.43□□□□□ -0.1
COL9A1P20849 MKRN2-201ENST00000170447 2848 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
COL9A1P20849 TSC2-201ENST00000219476 6156 ntAPPRIS P3 TSL 5 BASIC14.43□□□□□ -0.1
COL9A1P20849 NMBR-201ENST00000258042 1354 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
COL9A1P20849 SLC41A3-204ENST00000383598 2330 ntAPPRIS P3 TSL 2 BASIC14.43□□□□□ -0.1
COL9A1P20849 TLL1-204ENST00000507499 4818 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
COL9A1P20849 MAGEA2B-202ENST00000370293 1714 ntAPPRIS P1 TSL 2 BASIC14.43□□□□□ -0.1
COL9A1P20849 CWC27-201ENST00000381070 2078 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
COL9A1P20849 CYP4F22-202ENST00000601005 2445 ntAPPRIS P1 TSL 5 BASIC14.43□□□□□ -0.1
COL9A1P20849 CAMK2A-203ENST00000398376 1493 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
COL9A1P20849 RBP1-205ENST00000492918 1487 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
COL9A1P20849 LINC002481-201ENST00000499502 1821 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
COL9A1P20849 MGME1-202ENST00000377709 1936 ntTSL 2 BASIC14.43□□□□□ -0.1
COL9A1P20849 ELF2-204ENST00000394235 4012 ntAPPRIS P1 TSL 5 BASIC14.43□□□□□ -0.1
COL9A1P20849 TRIM13-204ENST00000420995 2607 ntAPPRIS P3 TSL 1 (best) BASIC14.43□□□□□ -0.1
COL9A1P20849 ABAT-203ENST00000425191 1923 ntAPPRIS P1 TSL 2 BASIC14.43□□□□□ -0.1
COL9A1P20849 ATP6V0E2-AS1-201ENST00000461019 2973 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
COL9A1P20849 CNTFR-204ENST00000610543 1926 ntAPPRIS P1 TSL 5 BASIC14.43□□□□□ -0.1
COL9A1P20849 LZTR1-201ENST00000215739 4572 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
COL9A1P20849 SLC38A6-201ENST00000267488 1688 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
COL9A1P20849 SERF1B-204ENST00000506542 1666 ntTSL 3 BASIC14.42□□□□□ -0.1
COL9A1P20849 GRB2-201ENST00000316615 3181 ntTSL 5 BASIC14.42□□□□□ -0.1
COL9A1P20849 GAPDH-205ENST00000396861 1348 ntAPPRIS P1 TSL 5 BASIC14.42□□□□□ -0.1
COL9A1P20849 PDZD8-201ENST00000334464 9699 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
COL9A1P20849 DNAH14-204ENST00000366849 2215 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
COL9A1P20849 ZSCAN5A-206ENST00000587492 1542 ntTSL 2 BASIC14.42□□□□□ -0.1
COL9A1P20849 RUNX1-201ENST00000300305 6222 ntAPPRIS P3 TSL 1 (best) BASIC14.42□□□□□ -0.1
COL9A1P20849 CCDC43-203ENST00000588210 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC14.42□□□□□ -0.1
COL9A1P20849 MAPK7-203ENST00000395602 3059 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
COL9A1P20849 CIART-201ENST00000290363 1746 ntAPPRIS P3 TSL 1 (best) BASIC14.42□□□□□ -0.1
COL9A1P20849 GNG4-202ENST00000366598 1721 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
COL9A1P20849 OSBPL5-210ENST00000525498 2733 ntTSL 2 BASIC14.42□□□□□ -0.1
COL9A1P20849 PER1-201ENST00000317276 4707 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
COL9A1P20849 SLC29A1-204ENST00000371731 2258 ntAPPRIS P1 TSL 5 BASIC14.42□□□□□ -0.1
COL9A1P20849 CYB5R2-201ENST00000299498 1254 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
COL9A1P20849 OR10K2-201ENST00000314902 939 ntAPPRIS P1 BASIC14.42□□□□□ -0.1
COL9A1P20849 GLRX2-202ENST00000367440 1131 ntAPPRIS P4 TSL 1 (best) BASIC14.42□□□□□ -0.1
COL9A1P20849 CDC23-201ENST00000394884 1079 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
COL9A1P20849 PPM1N-203ENST00000396737 872 ntTSL 2 BASIC14.42□□□□□ -0.1
COL9A1P20849 IL6RP1-201ENST00000417848 1273 ntBASIC14.42□□□□□ -0.1
COL9A1P20849 TTTY18-201ENST00000438677 221 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
COL9A1P20849 RBM14-205ENST00000443702 732 ntTSL 3 BASIC14.42□□□□□ -0.1
COL9A1P20849 AC114495.2-201ENST00000452686 437 ntBASIC14.42□□□□□ -0.1
COL9A1P20849 TIMP1-205ENST00000456754 1095 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
COL9A1P20849 HNRNPA1P56-201ENST00000505767 954 ntBASIC14.42□□□□□ -0.1
COL9A1P20849 RNU6-751P-201ENST00000516382 101 ntBASIC14.42□□□□□ -0.1
COL9A1P20849 AC007991.4-201ENST00000522970 605 ntTSL 3 BASIC14.42□□□□□ -0.1
COL9A1P20849 ABCD1P3-201ENST00000562927 605 ntBASIC14.42□□□□□ -0.1
COL9A1P20849 CLDN6-203ENST00000572154 461 ntTSL 3 BASIC14.42□□□□□ -0.1
COL9A1P20849 AC015917.2-201ENST00000580714 493 ntTSL 3 BASIC14.42□□□□□ -0.1
COL9A1P20849 LINC02081-201ENST00000586185 877 ntTSL 3 BASIC14.42□□□□□ -0.1
COL9A1P20849 AL157938.2-209ENST00000589128 792 ntTSL 2 BASIC14.42□□□□□ -0.1
COL9A1P20849 AL133467.4-201ENST00000602953 725 ntBASIC14.42□□□□□ -0.1
COL9A1P20849 AL162574.2-201ENST00000614618 657 ntBASIC14.42□□□□□ -0.1
COL9A1P20849 AC073578.4-201ENST00000623945 514 ntBASIC14.42□□□□□ -0.1
COL9A1P20849 DAGLB-204ENST00000436575 2385 ntTSL 2 BASIC14.42□□□□□ -0.1
COL9A1P20849 LILRP2-202ENST00000413572 1383 ntBASIC14.42□□□□□ -0.1
COL9A1P20849 ULK4-203ENST00000420927 1904 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
Retrieved 100 of 98,524 protein–RNA pairs in 56.2 ms