Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 FAM120A-202ENST00000375389 3585 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
USP39Q53GS9 SUGP2-214ENST00000600377 4752 ntAPPRIS ALT2 TSL 2 BASIC14.39□□□□□ -0.11
USP39Q53GS9 NIPAL3-202ENST00000339255 1676 ntTSL 5 BASIC14.39□□□□□ -0.11
USP39Q53GS9 AC092506.1-201ENST00000634580 2275 ntTSL 5 BASIC14.39□□□□□ -0.11
USP39Q53GS9 FLII-201ENST00000327031 4338 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
USP39Q53GS9 ATL3-203ENST00000538786 1920 ntAPPRIS ALT2 TSL 2 BASIC14.39□□□□□ -0.11
USP39Q53GS9 SOAT1-203ENST00000539888 6794 ntTSL 2 BASIC14.39□□□□□ -0.11
USP39Q53GS9 NFS1-203ENST00000374092 3012 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
USP39Q53GS9 KIAA0895L-202ENST00000561621 3500 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
USP39Q53GS9 C20orf166-AS1-203ENST00000475015 2585 ntTSL 2 BASIC14.38□□□□□ -0.11
USP39Q53GS9 ANKHD1-203ENST00000360839 8221 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
USP39Q53GS9 NRAS-201ENST00000369535 4449 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
USP39Q53GS9 GNAO1-201ENST00000262493 3337 ntAPPRIS P5 TSL 1 (best) BASIC14.38□□□□□ -0.11
USP39Q53GS9 ARMC5-202ENST00000408912 3626 ntAPPRIS ALT2 TSL 2 BASIC14.38□□□□□ -0.11
USP39Q53GS9 AC015688.4-201ENST00000580780 1647 ntBASIC14.38□□□□□ -0.11
USP39Q53GS9 EFHC1-227ENST00000637089 2133 ntTSL 5 BASIC14.38□□□□□ -0.11
USP39Q53GS9 CCP110-203ENST00000396212 5549 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
USP39Q53GS9 P4HA1-205ENST00000440381 2790 ntTSL 3 BASIC14.38□□□□□ -0.11
USP39Q53GS9 ANKH-201ENST00000284268 8203 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
USP39Q53GS9 KHSRPP1-201ENST00000427983 1768 ntBASIC14.38□□□□□ -0.11
USP39Q53GS9 KIR3DL2-201ENST00000270442 1546 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
USP39Q53GS9 OBSCN-AS1-201ENST00000295012 889 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
USP39Q53GS9 TTPAL-203ENST00000372906 1139 ntTSL 3 BASIC14.38□□□□□ -0.11
USP39Q53GS9 AC092580.1-201ENST00000433998 658 ntBASIC14.38□□□□□ -0.11
USP39Q53GS9 AC105390.1-201ENST00000511330 560 ntTSL 4 BASIC14.38□□□□□ -0.11
USP39Q53GS9 WDYHV1-206ENST00000523356 869 ntTSL 3 BASIC14.38□□□□□ -0.11
USP39Q53GS9 ZNF268-210ENST00000541211 781 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
USP39Q53GS9 TMBIM4-208ENST00000542724 770 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
USP39Q53GS9 AC009119.2-201ENST00000561562 723 ntAPPRIS P1 TSL 2 BASIC14.38□□□□□ -0.11
USP39Q53GS9 SKA2-205ENST00000580541 689 ntTSL 3 BASIC14.38□□□□□ -0.11
USP39Q53GS9 AC099811.3-201ENST00000586351 425 ntTSL 3 BASIC14.38□□□□□ -0.11
USP39Q53GS9 AC090386.2-201ENST00000623010 1039 ntBASIC14.38□□□□□ -0.11
USP39Q53GS9 ITGB4-203ENST00000450894 5645 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
USP39Q53GS9 FAM214B-202ENST00000378557 3070 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
USP39Q53GS9 SEPT9-228ENST00000590294 2816 ntAPPRIS ALT2 TSL 5 BASIC14.38□□□□□ -0.11
USP39Q53GS9 ACSM1-201ENST00000307493 2051 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
USP39Q53GS9 PTGES3-207ENST00000614328 2077 ntTSL 3 BASIC14.38□□□□□ -0.11
USP39Q53GS9 WDR59-201ENST00000262144 5898 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
USP39Q53GS9 RPUSD2-201ENST00000315616 2358 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
USP39Q53GS9 NOC2L-201ENST00000327044 2790 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
USP39Q53GS9 LETMD1-235ENST00000552739 1713 ntTSL 2 BASIC14.38□□□□□ -0.11
USP39Q53GS9 GRM1-203ENST00000361719 6754 ntAPPRIS P3 TSL 5 BASIC14.38□□□□□ -0.11
USP39Q53GS9 NDUFC2-201ENST00000281031 2518 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
USP39Q53GS9 RAPGEF4-201ENST00000397081 4299 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
USP39Q53GS9 AC108134.1-201ENST00000382225 3061 ntTSL 2 BASIC14.38□□□□□ -0.11
USP39Q53GS9 OSBPL5-203ENST00000389989 3619 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
USP39Q53GS9 OSBPL7-211ENST00000613735 2836 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
USP39Q53GS9 BANP-203ENST00000393207 2438 ntTSL 2 BASIC14.37□□□□□ -0.11
USP39Q53GS9 SELPLG-202ENST00000388962 1613 ntAPPRIS ALT2 TSL 5 BASIC14.37□□□□□ -0.11
USP39Q53GS9 XRCC3-211ENST00000555055 2584 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
USP39Q53GS9 FES-202ENST00000394300 2302 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
USP39Q53GS9 ADRB2-201ENST00000305988 3443 ntAPPRIS P1 BASIC14.37□□□□□ -0.11
USP39Q53GS9 CYB5D2-201ENST00000301391 1910 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
USP39Q53GS9 FAM90A21P-201ENST00000510875 1396 ntBASIC14.37□□□□□ -0.11
USP39Q53GS9 SLC4A8-204ENST00000514353 3041 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
USP39Q53GS9 FAM90A15P-201ENST00000514465 1395 ntBASIC14.37□□□□□ -0.11
USP39Q53GS9 FAM90A6P-201ENST00000515148 1394 ntBASIC14.37□□□□□ -0.11
USP39Q53GS9 FAM90A16P-201ENST00000526662 1395 ntBASIC14.37□□□□□ -0.11
USP39Q53GS9 FAM90A9P-201ENST00000527940 1395 ntBASIC14.37□□□□□ -0.11
USP39Q53GS9 FAM90A5P-201ENST00000528738 1395 ntBASIC14.37□□□□□ -0.11
USP39Q53GS9 FAM90A14P-201ENST00000530386 1395 ntBASIC14.37□□□□□ -0.11
USP39Q53GS9 FAM90A13P-201ENST00000534703 1395 ntBASIC14.37□□□□□ -0.11
USP39Q53GS9 AC005840.4-201ENST00000541242 2494 ntBASIC14.37□□□□□ -0.11
USP39Q53GS9 CCDC43-203ENST00000588210 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC14.37□□□□□ -0.11
USP39Q53GS9 ANKDD1A-202ENST00000395720 1518 ntTSL 5 BASIC14.37□□□□□ -0.11
USP39Q53GS9 COL4A2-AS2-201ENST00000458403 1522 ntTSL 2 BASIC14.37□□□□□ -0.11
USP39Q53GS9 AC021305.1-201ENST00000520656 1514 ntBASIC14.37□□□□□ -0.11
USP39Q53GS9 CAPN1-224ENST00000533129 2792 ntAPPRIS P1 TSL 5 BASIC14.37□□□□□ -0.11
USP39Q53GS9 PORCN-204ENST00000361988 1672 ntAPPRIS ALT1 TSL 5 BASIC14.37□□□□□ -0.11
USP39Q53GS9 C2-205ENST00000418949 1658 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
USP39Q53GS9 MLXIPL-203ENST00000354613 3215 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
USP39Q53GS9 ANKLE1-201ENST00000394458 3218 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
USP39Q53GS9 STOML1-206ENST00000561656 1833 ntTSL 3 BASIC14.37□□□□□ -0.11
USP39Q53GS9 NUP210-201ENST00000254508 7193 ntAPPRIS P1 TSL 2 BASIC14.37□□□□□ -0.11
USP39Q53GS9 LPO-210ENST00000582328 2680 ntAPPRIS ALT2 TSL 5 BASIC14.37□□□□□ -0.11
USP39Q53GS9 PNPLA3-201ENST00000216180 2805 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
USP39Q53GS9 CRTC1-202ENST00000338797 6929 ntAPPRIS ALT1 TSL 1 (best) BASIC14.37□□□□□ -0.11
USP39Q53GS9 KRTAP1-3-201ENST00000344363 972 ntAPPRIS P1 BASIC14.37□□□□□ -0.11
USP39Q53GS9 BGLAP-201ENST00000368272 732 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
USP39Q53GS9 LIF-202ENST00000403987 592 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
USP39Q53GS9 HCG27-204ENST00000424675 895 ntTSL 3 BASIC14.37□□□□□ -0.11
USP39Q53GS9 LINC00866-201ENST00000427379 418 ntTSL 2 BASIC14.37□□□□□ -0.11
USP39Q53GS9 TCERG1L-AS1-201ENST00000436942 472 ntTSL 2 BASIC14.37□□□□□ -0.11
USP39Q53GS9 CDYL-205ENST00000449732 2139 ntTSL 2 BASIC14.37□□□□□ -0.11
USP39Q53GS9 HMGCLL1-208ENST00000508459 884 ntTSL 2 BASIC14.37□□□□□ -0.11
USP39Q53GS9 AC091564.6-201ENST00000526633 487 ntTSL 3 BASIC14.37□□□□□ -0.11
USP39Q53GS9 LINC01154-201ENST00000548617 454 ntTSL 3 BASIC14.37□□□□□ -0.11
USP39Q53GS9 AC007952.4-201ENST00000573866 637 ntBASIC14.37□□□□□ -0.11
USP39Q53GS9 TMIGD2-204ENST00000600349 333 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
USP39Q53GS9 AC011471.3-201ENST00000623576 402 ntBASIC14.37□□□□□ -0.11
USP39Q53GS9 PSME2-201ENST00000216802 1404 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
USP39Q53GS9 ECHDC1-220ENST00000528402 1449 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
USP39Q53GS9 MICB-201ENST00000252229 2446 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
USP39Q53GS9 ALDH8A1-204ENST00000367847 1587 ntTSL 2 BASIC14.37□□□□□ -0.11
USP39Q53GS9 CDK5RAP3-201ENST00000338399 1866 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
USP39Q53GS9 INPPL1-213ENST00000541756 4649 ntTSL 5 BASIC14.37□□□□□ -0.11
USP39Q53GS9 UBXN11-206ENST00000374222 2043 ntAPPRIS P4 TSL 5 BASIC14.37□□□□□ -0.11
USP39Q53GS9 TRIM67-201ENST00000366653 3936 ntAPPRIS P2 TSL 1 (best) BASIC14.37□□□□□ -0.11
USP39Q53GS9 GOLGA2P7-207ENST00000559668 4253 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
USP39Q53GS9 PRMT7-202ENST00000441236 2204 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 49.9 ms