Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 FGFR1OP2-201ENST00000229395 2924 ntTSL 2 BASIC16.82■□□□□ 0.28
CCDC88AQ3V6T2 STK10-201ENST00000176763 6060 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CCDC88AQ3V6T2 CHSY3-201ENST00000305031 3850 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CCDC88AQ3V6T2 NOMO1-207ENST00000610363 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
CCDC88AQ3V6T2 SESN3-201ENST00000278499 1710 ntTSL 2 BASIC16.81■□□□□ 0.28
CCDC88AQ3V6T2 ITGA3-202ENST00000320031 4888 ntAPPRIS P2 TSL 1 (best) BASIC16.81■□□□□ 0.28
CCDC88AQ3V6T2 DNAAF5-201ENST00000297440 3410 ntAPPRIS P2 TSL 1 (best) BASIC16.81■□□□□ 0.28
CCDC88AQ3V6T2 VARS-215ENST00000375663 4312 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CCDC88AQ3V6T2 TATDN3-201ENST00000366973 2321 ntAPPRIS ALT1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CCDC88AQ3V6T2 TTC23L-203ENST00000505624 1353 ntAPPRIS P2 TSL 1 (best) BASIC16.81■□□□□ 0.28
CCDC88AQ3V6T2 PRKD2-201ENST00000291281 3070 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
CCDC88AQ3V6T2 PMM1-201ENST00000216259 1298 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CCDC88AQ3V6T2 CDRT15L2-201ENST00000399044 1048 ntAPPRIS P1 TSL 2 BASIC16.81■□□□□ 0.28
CCDC88AQ3V6T2 CFL1P6-201ENST00000400899 494 ntBASIC16.81■□□□□ 0.28
CCDC88AQ3V6T2 DNM1P46-202ENST00000415963 882 ntBASIC16.81■□□□□ 0.28
CCDC88AQ3V6T2 CDYL-205ENST00000449732 2139 ntTSL 2 BASIC16.81■□□□□ 0.28
CCDC88AQ3V6T2 GIMAP6-202ENST00000493969 876 ntTSL 2 BASIC16.81■□□□□ 0.28
CCDC88AQ3V6T2 AC022113.2-201ENST00000504935 704 ntTSL 3 BASIC16.81■□□□□ 0.28
CCDC88AQ3V6T2 SPRY4-AS1-206ENST00000515288 539 ntTSL 2 BASIC16.81■□□□□ 0.28
CCDC88AQ3V6T2 SRP19-208ENST00000621420 1270 ntTSL 3 BASIC16.81■□□□□ 0.28
CCDC88AQ3V6T2 AL590094.1-208ENST00000636917 627 ntTSL 5 BASIC16.81■□□□□ 0.28
CCDC88AQ3V6T2 ACSM1-201ENST00000307493 2051 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CCDC88AQ3V6T2 DRC3-203ENST00000399187 2008 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CCDC88AQ3V6T2 ZNF563-201ENST00000293725 2754 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CCDC88AQ3V6T2 FCRL6-201ENST00000321935 1997 ntAPPRIS ALT2 TSL 2 BASIC16.81■□□□□ 0.28
CCDC88AQ3V6T2 PLAU-202ENST00000446342 2658 ntAPPRIS ALT2 TSL 2 BASIC16.81■□□□□ 0.28
CCDC88AQ3V6T2 SS18-201ENST00000269137 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CCDC88AQ3V6T2 AAMP-204ENST00000444053 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CCDC88AQ3V6T2 ZNF655-201ENST00000252713 2535 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
CCDC88AQ3V6T2 ARID3A-201ENST00000263620 5941 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CCDC88AQ3V6T2 TBC1D8-202ENST00000409318 3803 ntTSL 5 BASIC16.81■□□□□ 0.28
CCDC88AQ3V6T2 OR2A25-202ENST00000641441 1733 ntAPPRIS P1 BASIC16.81■□□□□ 0.28
CCDC88AQ3V6T2 ADRA2A-201ENST00000280155 3745 ntAPPRIS P1 BASIC16.81■□□□□ 0.28
CCDC88AQ3V6T2 KIAA1549-201ENST00000422774 6283 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
CCDC88AQ3V6T2 CCNB2-201ENST00000288207 1556 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CCDC88AQ3V6T2 UBE2R2-201ENST00000263228 4075 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CCDC88AQ3V6T2 ARID1B-203ENST00000350026 7962 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
CCDC88AQ3V6T2 FO681492.1-201ENST00000623662 5321 ntAPPRIS P5 TSL 2 BASIC16.8■□□□□ 0.28
CCDC88AQ3V6T2 DUSP8-202ENST00000397374 4480 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CCDC88AQ3V6T2 ZBED1-201ENST00000381218 2832 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CCDC88AQ3V6T2 OR4C14P-201ENST00000440929 923 ntBASIC16.8■□□□□ 0.28
CCDC88AQ3V6T2 AL513165.2-203ENST00000537239 717 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
CCDC88AQ3V6T2 AC140912.1-202ENST00000561802 194 ntTSL 3 BASIC16.8■□□□□ 0.28
CCDC88AQ3V6T2 AC009120.2-205ENST00000561921 490 ntTSL 3 BASIC16.8■□□□□ 0.28
CCDC88AQ3V6T2 AC090282.1-201ENST00000572821 534 ntTSL 3 BASIC16.8■□□□□ 0.28
CCDC88AQ3V6T2 ADORA3-204ENST00000632535 1201 ntTSL 3 BASIC16.8■□□□□ 0.28
CCDC88AQ3V6T2 MEP1AP1-201ENST00000636082 1097 ntBASIC16.8■□□□□ 0.28
CCDC88AQ3V6T2 KDM6B-202ENST00000448097 5422 ntAPPRIS ALT2 TSL 5 BASIC16.8■□□□□ 0.28
CCDC88AQ3V6T2 PPP4R4-201ENST00000304338 3868 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CCDC88AQ3V6T2 LGALS4-201ENST00000307751 1535 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CCDC88AQ3V6T2 MUM1-201ENST00000415183 2837 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
CCDC88AQ3V6T2 PDHX-201ENST00000227868 2389 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CCDC88AQ3V6T2 SPHK2-210ENST00000599748 2683 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
CCDC88AQ3V6T2 CRISP2-201ENST00000339139 1382 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CCDC88AQ3V6T2 SGK3-208ENST00000521198 3306 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CCDC88AQ3V6T2 AL031590.1-202ENST00000641466 1737 ntBASIC16.8■□□□□ 0.28
CCDC88AQ3V6T2 TRAPPC8-210ENST00000582513 3205 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
CCDC88AQ3V6T2 RBP4-203ENST00000371469 814 ntTSL 5 BASIC16.8■□□□□ 0.28
CCDC88AQ3V6T2 TPT1P9-201ENST00000413759 514 ntBASIC16.8■□□□□ 0.28
CCDC88AQ3V6T2 AC007383.2-201ENST00000420509 752 ntTSL 2 BASIC16.8■□□□□ 0.28
CCDC88AQ3V6T2 KCNC4-AS1-201ENST00000455967 748 ntTSL 2 BASIC16.8■□□□□ 0.28
CCDC88AQ3V6T2 RN7SL69P-201ENST00000468423 272 ntBASIC16.8■□□□□ 0.28
CCDC88AQ3V6T2 DLG4-206ENST00000485100 1004 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
CCDC88AQ3V6T2 AC106789.1-201ENST00000512927 570 ntTSL 4 BASIC16.8■□□□□ 0.28
CCDC88AQ3V6T2 RPL10P8-201ENST00000522888 313 ntBASIC16.8■□□□□ 0.28
CCDC88AQ3V6T2 AC007223.1-201ENST00000564076 572 ntTSL 3 BASIC16.8■□□□□ 0.28
CCDC88AQ3V6T2 ACTBP9-201ENST00000587663 1099 ntBASIC16.8■□□□□ 0.28
CCDC88AQ3V6T2 GBA2-202ENST00000378094 3757 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
CCDC88AQ3V6T2 AC008620.2-201ENST00000510294 1569 ntBASIC16.8■□□□□ 0.28
CCDC88AQ3V6T2 GUCY2EP-203ENST00000531117 1918 ntBASIC16.8■□□□□ 0.28
CCDC88AQ3V6T2 DMC1-207ENST00000616615 1595 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
CCDC88AQ3V6T2 POLR2E-213ENST00000615234 2831 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CCDC88AQ3V6T2 SYNM-201ENST00000328642 3960 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
CCDC88AQ3V6T2 GNA13-201ENST00000439174 4922 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CCDC88AQ3V6T2 PTPRH-201ENST00000263434 3343 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
CCDC88AQ3V6T2 UCP2-202ENST00000536983 1413 ntTSL 5 BASIC16.79■□□□□ 0.28
CCDC88AQ3V6T2 PKD1P6-NPIPP1-202ENST00000605794 2902 ntTSL 2 BASIC16.79■□□□□ 0.28
CCDC88AQ3V6T2 PCGF3-201ENST00000362003 5685 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
CCDC88AQ3V6T2 NT5C3A-213ENST00000610140 1670 ntAPPRIS ALT1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CCDC88AQ3V6T2 MSMO1-201ENST00000261507 2269 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CCDC88AQ3V6T2 CXorf40A-209ENST00000441248 2411 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
CCDC88AQ3V6T2 TBK1-201ENST00000331710 3256 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CCDC88AQ3V6T2 EIF3F-201ENST00000309828 1254 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CCDC88AQ3V6T2 AC131011.1-201ENST00000366134 672 ntTSL 3 BASIC16.79■□□□□ 0.28
CCDC88AQ3V6T2 IGLV3-9-201ENST00000390316 461 ntAPPRIS P1 BASIC16.79■□□□□ 0.28
CCDC88AQ3V6T2 AP001596.1-201ENST00000429340 781 ntTSL 5 BASIC16.79■□□□□ 0.28
CCDC88AQ3V6T2 OR52V1P-201ENST00000515557 898 ntBASIC16.79■□□□□ 0.28
CCDC88AQ3V6T2 EEF1AKMT3-203ENST00000548256 561 ntTSL 4 BASIC16.79■□□□□ 0.28
CCDC88AQ3V6T2 AC087741.1-205ENST00000572730 750 ntTSL 3 BASIC16.79■□□□□ 0.28
CCDC88AQ3V6T2 AC007292.1-201ENST00000594444 746 ntTSL 2 BASIC16.79■□□□□ 0.28
CCDC88AQ3V6T2 AC009542.1-201ENST00000412549 1810 ntTSL 2 BASIC16.79■□□□□ 0.28
CCDC88AQ3V6T2 CCDC183-AS1-201ENST00000414656 2386 ntTSL 2 BASIC16.79■□□□□ 0.28
CCDC88AQ3V6T2 ARC-201ENST00000356613 2948 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CCDC88AQ3V6T2 ERICH6-201ENST00000295910 2052 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
CCDC88AQ3V6T2 CHRNA4-201ENST00000370263 5577 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CCDC88AQ3V6T2 HRH2-202ENST00000377291 2561 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
CCDC88AQ3V6T2 PSMC5-212ENST00000581882 1474 ntTSL 5 BASIC16.79■□□□□ 0.28
CCDC88AQ3V6T2 NIPAL2-201ENST00000341166 4581 ntTSL 2 BASIC16.79■□□□□ 0.28
CCDC88AQ3V6T2 ARHGAP27P1-BPTFP1-KPNA2P3-201ENST00000578492 2732 ntTSL 2 BASIC16.79■□□□□ 0.28
CCDC88AQ3V6T2 PCYOX1-201ENST00000264441 2959 ntTSL 5 BASIC16.79■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 39.2 ms