Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 SPIN3-245ENST00000640768 1722 ntTSL 5 BASIC13.1□□□□□ -0.31
RNF4P78317 LILRA2-203ENST00000391737 1452 ntAPPRIS ALT2 TSL 1 (best) BASIC13.1□□□□□ -0.31
RNF4P78317 UMODL1-AS1-201ENST00000329015 2141 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
RNF4P78317 GPR132-203ENST00000539291 2779 ntAPPRIS P3 TSL 2 BASIC13.1□□□□□ -0.31
RNF4P78317 PRKD1-202ENST00000415220 3189 ntAPPRIS ALT2 TSL 5 BASIC13.1□□□□□ -0.31
RNF4P78317 KCNT1-207ENST00000487664 3845 ntAPPRIS ALT2 TSL 5 BASIC13.1□□□□□ -0.31
RNF4P78317 MBD1-225ENST00000591535 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC13.1□□□□□ -0.31
RNF4P78317 PHACTR2-202ENST00000367582 4367 ntAPPRIS ALT2 TSL 1 (best) BASIC13.1□□□□□ -0.31
RNF4P78317 ATP8B3-201ENST00000310127 5095 ntAPPRIS P3 TSL 1 (best) BASIC13.1□□□□□ -0.31
RNF4P78317 METTL7B-201ENST00000394252 1506 ntAPPRIS P1 TSL 2 BASIC13.1□□□□□ -0.31
RNF4P78317 PPP1R1B-203ENST00000394267 1504 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
RNF4P78317 PGRMC1-201ENST00000217971 1911 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
RNF4P78317 GUCY1B2-205ENST00000532104 1912 ntTSL 2 BASIC13.1□□□□□ -0.31
RNF4P78317 DDR1-271ENST00000513240 2882 ntAPPRIS ALT2 TSL 5 BASIC13.1□□□□□ -0.31
RNF4P78317 DPEP2-202ENST00000393847 1697 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
RNF4P78317 VPS25-201ENST00000253794 1101 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
RNF4P78317 LAIR2-201ENST00000301202 699 ntAPPRIS P4 TSL 1 (best) BASIC13.1□□□□□ -0.31
RNF4P78317 RPAIN-201ENST00000327154 815 ntTSL 2 BASIC13.1□□□□□ -0.31
RNF4P78317 GSG1L-201ENST00000380897 1173 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
RNF4P78317 PHACTR2-204ENST00000397980 745 ntTSL 3 BASIC13.1□□□□□ -0.31
RNF4P78317 ZNF226-203ENST00000413984 716 ntTSL 3 BASIC13.1□□□□□ -0.31
RNF4P78317 STK33P1-201ENST00000423835 1218 ntBASIC13.1□□□□□ -0.31
RNF4P78317 DLGAP4-AS1-202ENST00000433238 593 ntTSL 3 BASIC13.1□□□□□ -0.31
RNF4P78317 PGAP2-212ENST00000464906 1259 ntTSL 2 BASIC13.1□□□□□ -0.31
RNF4P78317 PPP2R1A-209ENST00000477989 444 ntTSL 3 BASIC13.1□□□□□ -0.31
RNF4P78317 RPL18AP8-201ENST00000486071 528 ntBASIC13.1□□□□□ -0.31
RNF4P78317 LINC01229-204ENST00000568751 720 ntTSL 3 BASIC13.1□□□□□ -0.31
RNF4P78317 AL031282.1-201ENST00000577672 409 ntTSL 3 BASIC13.1□□□□□ -0.31
RNF4P78317 RN7SL455P-201ENST00000580629 282 ntBASIC13.1□□□□□ -0.31
RNF4P78317 AC079336.4-201ENST00000584219 408 ntTSL 2 BASIC13.1□□□□□ -0.31
RNF4P78317 AC008763.2-203ENST00000595866 762 ntAPPRIS ALT2 TSL 5 BASIC13.1□□□□□ -0.31
RNF4P78317 TP53-221ENST00000615910 1149 ntTSL 5 BASIC13.1□□□□□ -0.31
RNF4P78317 AL353726.2-201ENST00000623259 884 ntBASIC13.1□□□□□ -0.31
RNF4P78317 SLC4A8-204ENST00000514353 3041 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
RNF4P78317 ACAD8-201ENST00000281182 2249 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
RNF4P78317 SMARCA2-204ENST00000357248 5855 ntAPPRIS P1 TSL 5 BASIC13.1□□□□□ -0.31
RNF4P78317 TMPRSS6-201ENST00000346753 3197 ntAPPRIS P3 TSL 1 (best) BASIC13.1□□□□□ -0.31
RNF4P78317 ARHGAP25-216ENST00000497079 1843 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
RNF4P78317 BORCS8-202ENST00000462790 1429 ntAPPRIS P3 TSL 1 (best) BASIC13.1□□□□□ -0.31
RNF4P78317 CHD1-212ENST00000614616 8095 ntAPPRIS P1 TSL 5 BASIC13.1□□□□□ -0.31
RNF4P78317 RUNX3-201ENST00000308873 3861 ntAPPRIS P3 TSL 1 (best) BASIC13.1□□□□□ -0.31
RNF4P78317 NRAS-201ENST00000369535 4449 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
RNF4P78317 ZFYVE28-211ENST00000515312 3247 ntAPPRIS ALT2 TSL 2 BASIC13.1□□□□□ -0.31
RNF4P78317 MEX3B-201ENST00000329713 3528 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
RNF4P78317 WDR77-201ENST00000235090 2576 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
RNF4P78317 PAPOLA-201ENST00000216277 4519 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
RNF4P78317 ADCY6-201ENST00000307885 6464 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
RNF4P78317 RSBN1-201ENST00000261441 6621 ntAPPRIS P1 TSL 2 BASIC13.1□□□□□ -0.31
RNF4P78317 TEX264-201ENST00000341333 1340 ntAPPRIS P3 TSL 1 (best) BASIC13.1□□□□□ -0.31
RNF4P78317 SERPING1-201ENST00000278407 2002 ntAPPRIS P2 TSL 1 (best) BASIC13.1□□□□□ -0.31
RNF4P78317 MAP2K1-201ENST00000307102 3410 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
RNF4P78317 AC092053.3-201ENST00000641308 4975 ntBASIC13.1□□□□□ -0.31
RNF4P78317 NHLH2-202ENST00000369506 7226 ntAPPRIS P1 BASIC13.1□□□□□ -0.31
RNF4P78317 AC046130.1-201ENST00000501954 2179 ntTSL 5 BASIC13.1□□□□□ -0.31
RNF4P78317 TSC22D1-211ENST00000501704 4026 ntTSL 2 BASIC13.1□□□□□ -0.31
RNF4P78317 XPNPEP1-201ENST00000322238 2467 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
RNF4P78317 RNF182-208ENST00000544682 3495 ntAPPRIS P1 TSL 4 BASIC13.09□□□□□ -0.31
RNF4P78317 DDX41-208ENST00000507955 2607 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
RNF4P78317 RTEL1-203ENST00000360203 4623 ntAPPRIS P1 TSL 5 BASIC13.09□□□□□ -0.31
RNF4P78317 FGD5-AS1-202ENST00000424349 3792 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
RNF4P78317 LINC00667-206ENST00000582363 2935 ntTSL 2 BASIC13.09□□□□□ -0.31
RNF4P78317 CALCB-203ENST00000533448 2097 ntAPPRIS P1 TSL 2 BASIC13.09□□□□□ -0.31
RNF4P78317 HS1BP3-201ENST00000304031 2370 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
RNF4P78317 CCNDBP1-201ENST00000300213 3660 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
RNF4P78317 USP49-203ENST00000394253 9034 ntAPPRIS P1 TSL 5 BASIC13.09□□□□□ -0.31
RNF4P78317 CFAP36-201ENST00000339012 1373 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
RNF4P78317 SNHG1-213ENST00000540725 1374 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
RNF4P78317 HLA-DQB1-202ENST00000399079 1501 ntBASIC13.09□□□□□ -0.31
RNF4P78317 RNF216-202ENST00000389902 3293 ntAPPRIS P4 TSL 1 (best) BASIC13.09□□□□□ -0.31
RNF4P78317 ARMC8-213ENST00000470821 1656 ntTSL 5 BASIC13.09□□□□□ -0.31
RNF4P78317 MAX-219ENST00000618858 2141 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
RNF4P78317 DLGAP1-204ENST00000400149 5203 ntTSL 5 BASIC13.09□□□□□ -0.31
RNF4P78317 MAPKAPK5-206ENST00000550735 11349 ntAPPRIS ALT1 TSL 1 (best) BASIC13.09□□□□□ -0.31
RNF4P78317 ZNF655-212ENST00000424881 4666 ntAPPRIS ALT2 TSL 2 BASIC13.09□□□□□ -0.31
RNF4P78317 FERD3L-201ENST00000275461 640 ntAPPRIS P1 BASIC13.09□□□□□ -0.31
RNF4P78317 CMTM1-201ENST00000328020 981 ntAPPRIS ALT2 TSL 1 (best) BASIC13.09□□□□□ -0.31
RNF4P78317 CMTM1-202ENST00000332695 624 ntAPPRIS ALT2 TSL 1 (best) BASIC13.09□□□□□ -0.31
RNF4P78317 CMTM1-205ENST00000379500 1064 ntAPPRIS P4 TSL 1 (best) BASIC13.09□□□□□ -0.31
RNF4P78317 TRBJ2-6-201ENST00000390418 53 ntAPPRIS P1 BASIC13.09□□□□□ -0.31
RNF4P78317 XG-202ENST00000419513 979 ntAPPRIS ALT2 TSL 1 (best) BASIC13.09□□□□□ -0.31
RNF4P78317 AC060234.1-201ENST00000422966 474 ntTSL 3 BASIC13.09□□□□□ -0.31
RNF4P78317 AC004997.1-205ENST00000447976 1851 ntTSL 2 BASIC13.09□□□□□ -0.31
RNF4P78317 BX324167.1-201ENST00000451118 805 ntTSL 5 BASIC13.09□□□□□ -0.31
RNF4P78317 SRSF10-211ENST00000484146 1089 ntTSL 2 BASIC13.09□□□□□ -0.31
RNF4P78317 TAPBP-241ENST00000489157 1299 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
RNF4P78317 SLC25A15P3-201ENST00000505530 290 ntBASIC13.09□□□□□ -0.31
RNF4P78317 AC005833.2-201ENST00000527518 1249 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
RNF4P78317 CMTM1-209ENST00000528324 749 ntAPPRIS ALT2 TSL 1 (best) BASIC13.09□□□□□ -0.31
RNF4P78317 NEU3-205ENST00000531619 582 ntTSL 5 BASIC13.09□□□□□ -0.31
RNF4P78317 CMTM1-217ENST00000533666 493 ntAPPRIS ALT2 TSL 1 (best) BASIC13.09□□□□□ -0.31
RNF4P78317 AC025154.2-201ENST00000550530 445 ntTSL 3 BASIC13.09□□□□□ -0.31
RNF4P78317 TMEM117-207ENST00000551577 2643 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
RNF4P78317 AC079328.1-201ENST00000560358 952 ntBASIC13.09□□□□□ -0.31
RNF4P78317 PRKXP1-201ENST00000561423 1122 ntBASIC13.09□□□□□ -0.31
RNF4P78317 FAM104A-206ENST00000583024 417 ntTSL 3 BASIC13.09□□□□□ -0.31
RNF4P78317 FBXL12-202ENST00000585379 956 ntTSL 2 BASIC13.09□□□□□ -0.31
RNF4P78317 AC103810.10-201ENST00000606504 343 ntBASIC13.09□□□□□ -0.31
RNF4P78317 EAF1-AS1-208ENST00000608408 770 ntTSL 5 BASIC13.09□□□□□ -0.31
RNF4P78317 KIF21B-201ENST00000332129 9897 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
RNF4P78317 ADI1-201ENST00000327435 2391 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Retrieved 100 of 98,524 protein–RNA pairs in 49.1 ms