Protein–RNA interactions for Protein: P55854

SUMO3, Small ubiquitin-related modifier 3, humanhuman

Predicted RBP Predictions only

Length 103 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SUMO3P55854 MIR3677-201ENST00000578964 60 ntBASIC12.76□□□□□ -0.37
SUMO3P55854 SIGLEC22P-201ENST00000599104 714 ntBASIC12.76□□□□□ -0.37
SUMO3P55854 SIGLEC22P-202ENST00000602065 544 ntTSL 4 BASIC12.76□□□□□ -0.37
SUMO3P55854 SNRPA1-216ENST00000626000 539 ntTSL 5 BASIC12.76□□□□□ -0.37
SUMO3P55854 AC006453.1-201ENST00000636037 1257 ntBASIC12.76□□□□□ -0.37
SUMO3P55854 ARRDC4-201ENST00000268042 4072 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
SUMO3P55854 TMEM47-201ENST00000275954 4054 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
SUMO3P55854 RPS6KC1-201ENST00000366959 5454 ntAPPRIS ALT1 TSL 2 BASIC12.76□□□□□ -0.37
SUMO3P55854 RPS6KC1-202ENST00000366960 5490 ntAPPRIS P3 TSL 1 (best) BASIC12.76□□□□□ -0.37
SUMO3P55854 AL358781.1-202ENST00000321081 1360 ntBASIC12.76□□□□□ -0.37
SUMO3P55854 CLASRP-204ENST00000544944 2769 ntAPPRIS ALT2 TSL 2 BASIC12.76□□□□□ -0.37
SUMO3P55854 RPS6KC1-207ENST00000543470 4227 ntTSL 2 BASIC12.76□□□□□ -0.37
SUMO3P55854 IL17RA-204ENST00000612619 8506 ntAPPRIS ALT2 TSL 5 BASIC12.76□□□□□ -0.37
SUMO3P55854 TBC1D3J-201ENST00000620719 1426 ntBASIC12.76□□□□□ -0.37
SUMO3P55854 TOP3B-201ENST00000357179 2863 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
SUMO3P55854 CAMKV-201ENST00000296471 2913 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
SUMO3P55854 LAIR1-201ENST00000348231 1467 ntAPPRIS ALT2 TSL 1 (best) BASIC12.76□□□□□ -0.37
SUMO3P55854 UBBP4-202ENST00000584755 1459 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
SUMO3P55854 HELLS-202ENST00000348459 3099 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
SUMO3P55854 TBC1D27-202ENST00000424239 1573 ntBASIC12.76□□□□□ -0.37
SUMO3P55854 TAGLN2-203ENST00000368097 1604 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
SUMO3P55854 TMEM132C-201ENST00000435159 4947 ntAPPRIS P1 TSL 5 BASIC12.76□□□□□ -0.37
SUMO3P55854 AC010255.3-203ENST00000509403 1727 ntAPPRIS P1 TSL 2 BASIC12.76□□□□□ -0.37
SUMO3P55854 FAM219A-204ENST00000379081 3543 ntTSL 5 BASIC12.76□□□□□ -0.37
SUMO3P55854 DDC-207ENST00000444124 2041 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
SUMO3P55854 GMPR2-206ENST00000557854 2025 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
SUMO3P55854 MAP2K3-214ENST00000613338 2029 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
SUMO3P55854 AMT-201ENST00000273588 2280 ntAPPRIS P3 TSL 1 (best) BASIC12.76□□□□□ -0.37
SUMO3P55854 SLC20A2-207ENST00000520179 2284 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
SUMO3P55854 KC6-207ENST00000600644 2311 ntTSL 3 BASIC12.76□□□□□ -0.37
SUMO3P55854 WASF3-202ENST00000361042 4823 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
SUMO3P55854 STIP1-203ENST00000358794 2743 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
SUMO3P55854 CHRND-206ENST00000543200 2918 ntTSL 2 BASIC12.75□□□□□ -0.37
SUMO3P55854 TMEM182-201ENST00000409173 3198 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
SUMO3P55854 TMSB10-201ENST00000233143 496 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
SUMO3P55854 NCF4-201ENST00000248899 1396 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
SUMO3P55854 FERD3L-201ENST00000275461 640 ntAPPRIS P1 BASIC12.75□□□□□ -0.37
SUMO3P55854 SLC25A31-201ENST00000281154 1841 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
SUMO3P55854 CCNB2-201ENST00000288207 1556 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
SUMO3P55854 INTS14-201ENST00000313182 2393 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
SUMO3P55854 SERTAD2-201ENST00000313349 5549 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
SUMO3P55854 TCAIM-201ENST00000342649 3687 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
SUMO3P55854 SARS-202ENST00000369923 1882 ntTSL 5 BASIC12.75□□□□□ -0.37
SUMO3P55854 CPN1-201ENST00000370418 1863 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
SUMO3P55854 NUDT2-202ENST00000379155 1002 ntAPPRIS P1 TSL 3 BASIC12.75□□□□□ -0.37
SUMO3P55854 CFAP52-202ENST00000396219 1912 ntTSL 2 BASIC12.75□□□□□ -0.37
SUMO3P55854 PCDHA11-201ENST00000398640 6115 ntAPPRIS P3 TSL 1 (best) BASIC12.75□□□□□ -0.37
SUMO3P55854 CDCA7-203ENST00000410019 1488 ntTSL 2 BASIC12.75□□□□□ -0.37
SUMO3P55854 KRT8P18-201ENST00000413425 1445 ntBASIC12.75□□□□□ -0.37
SUMO3P55854 DCAF7-201ENST00000415273 1220 ntTSL 2 BASIC12.75□□□□□ -0.37
SUMO3P55854 IMPDH1-204ENST00000419067 2431 ntTSL 3 BASIC12.75□□□□□ -0.37
SUMO3P55854 CYB561D1-204ENST00000420578 3326 ntAPPRIS P3 TSL 1 (best) BASIC12.75□□□□□ -0.37
SUMO3P55854 HDAC11-213ENST00000437379 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC12.75□□□□□ -0.37
SUMO3P55854 CSHL1-205ENST00000438387 566 ntTSL 5 BASIC12.75□□□□□ -0.37
SUMO3P55854 CHL1-AS2-203ENST00000452919 726 ntTSL 2 BASIC12.75□□□□□ -0.37
SUMO3P55854 PCOLCE2-208ENST00000485766 1088 ntTSL 5 BASIC12.75□□□□□ -0.37
SUMO3P55854 AC036214.1-201ENST00000502766 2126 ntTSL 2 BASIC12.75□□□□□ -0.37
SUMO3P55854 LINC01598-205ENST00000508763 719 ntTSL 5 BASIC12.75□□□□□ -0.37
SUMO3P55854 MCPH1-AS1-201ENST00000515608 2147 ntTSL 5 BASIC12.75□□□□□ -0.37
SUMO3P55854 AC087269.1-202ENST00000519147 400 ntTSL 3 BASIC12.75□□□□□ -0.37
SUMO3P55854 USP44-203ENST00000537435 2499 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
SUMO3P55854 VIPAS39-208ENST00000556412 1832 ntTSL 2 BASIC12.75□□□□□ -0.37
SUMO3P55854 AC135782.2-201ENST00000562040 472 ntTSL 3 BASIC12.75□□□□□ -0.37
SUMO3P55854 AC145285.5-201ENST00000562217 361 ntBASIC12.75□□□□□ -0.37
SUMO3P55854 JPT2-214ENST00000569765 782 ntTSL 2 BASIC12.75□□□□□ -0.37
SUMO3P55854 AC104961.2-201ENST00000578129 663 ntTSL 2 BASIC12.75□□□□□ -0.37
SUMO3P55854 AC011474.2-201ENST00000579268 543 ntTSL 3 BASIC12.75□□□□□ -0.37
SUMO3P55854 IFT20-214ENST00000585089 1071 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
SUMO3P55854 ATP6V0A1-206ENST00000585525 2679 ntTSL 2 BASIC12.75□□□□□ -0.37
SUMO3P55854 NFATC1-218ENST00000592223 2531 ntAPPRIS ALT2 TSL 1 (best) BASIC12.75□□□□□ -0.37
SUMO3P55854 NEAT1-203ENST00000601801 487 ntTSL 4 BASIC12.75□□□□□ -0.37
SUMO3P55854 ABHD18-206ENST00000611882 1493 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
SUMO3P55854 AC009560.1-201ENST00000620208 434 ntBASIC12.75□□□□□ -0.37
SUMO3P55854 AL161773.1-201ENST00000624845 863 ntBASIC12.75□□□□□ -0.37
SUMO3P55854 LINC00854-216ENST00000636331 718 ntAPPRIS P5 TSL 5 BASIC12.75□□□□□ -0.37
SUMO3P55854 NRP2-201ENST00000272849 5909 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
SUMO3P55854 ALCAM-201ENST00000306107 4701 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
SUMO3P55854 UBE3A-204ENST00000438097 8939 ntAPPRIS P3 TSL 5 BASIC12.75□□□□□ -0.37
SUMO3P55854 MYLK2-202ENST00000375994 2956 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
SUMO3P55854 GPRC5B-209ENST00000569479 2984 ntAPPRIS P2 TSL 5 BASIC12.75□□□□□ -0.37
SUMO3P55854 TICAM1-201ENST00000248244 2676 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
SUMO3P55854 SSTR2-201ENST00000357585 7683 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
SUMO3P55854 MAPK4-201ENST00000400384 4770 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
SUMO3P55854 ABCG2-201ENST00000237612 4479 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
SUMO3P55854 LINC02551-202ENST00000533812 2203 ntTSL 5 BASIC12.74□□□□□ -0.37
SUMO3P55854 MAP3K12-201ENST00000267079 4319 ntAPPRIS P3 TSL 1 (best) BASIC12.74□□□□□ -0.37
SUMO3P55854 VAC14-AS1-201ENST00000398177 2145 ntTSL 2 BASIC12.74□□□□□ -0.37
SUMO3P55854 AL117190.1-201ENST00000637474 1985 ntTSL 5 BASIC12.74□□□□□ -0.37
SUMO3P55854 STRC-205ENST00000450892 5680 ntAPPRIS P2 TSL 5 BASIC12.74□□□□□ -0.37
SUMO3P55854 AC073548.1-201ENST00000624088 1882 ntBASIC12.74□□□□□ -0.37
SUMO3P55854 SLC39A14-201ENST00000240095 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC12.74□□□□□ -0.37
SUMO3P55854 GNG4-202ENST00000366598 1721 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
SUMO3P55854 C11orf21-201ENST00000381153 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC12.74□□□□□ -0.37
SUMO3P55854 GPN3-201ENST00000228827 1468 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
SUMO3P55854 AF013593.1-201ENST00000458074 1487 ntBASIC12.74□□□□□ -0.37
SUMO3P55854 MPZL2-202ENST00000438295 1370 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
SUMO3P55854 PDE4A-209ENST00000592685 2707 ntAPPRIS ALT2 TSL 1 (best) BASIC12.74□□□□□ -0.37
SUMO3P55854 CRACR2A-203ENST00000440314 2697 ntAPPRIS P1 TSL 2 BASIC12.74□□□□□ -0.37
SUMO3P55854 FSTL4-207ENST00000621681 2660 ntTSL 5 BASIC12.74□□□□□ -0.37
SUMO3P55854 AC104667.2-202ENST00000452801 1301 ntTSL 2 BASIC12.74□□□□□ -0.37
Retrieved 100 of 98,524 protein–RNA pairs in 40.2 ms