Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 CYP2J2-201ENST00000371204 1896 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
FOXA1P55317 CC2D1A-201ENST00000318003 3581 ntAPPRIS P2 TSL 1 (best) BASIC13.7□□□□□ -0.22
FOXA1P55317 B4GALT4-201ENST00000359213 2385 ntAPPRIS P1 TSL 2 BASIC13.69□□□□□ -0.22
FOXA1P55317 TMEM9-204ENST00000367334 1529 ntAPPRIS P3 TSL 1 (best) BASIC13.69□□□□□ -0.22
FOXA1P55317 MGRN1-202ENST00000399577 6425 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
FOXA1P55317 EVC2-201ENST00000310917 4828 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
FOXA1P55317 AP4M1-201ENST00000359593 1817 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
FOXA1P55317 DAB1-207ENST00000420954 1817 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
FOXA1P55317 CTSW-204ENST00000528419 1341 ntTSL 2 BASIC13.69□□□□□ -0.22
FOXA1P55317 MTHFSD-204ENST00000546093 2451 ntTSL 2 BASIC13.69□□□□□ -0.22
FOXA1P55317 AC020917.4-201ENST00000623994 1999 ntBASIC13.69□□□□□ -0.22
FOXA1P55317 KRT33B-201ENST00000251646 1607 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
FOXA1P55317 IZUMO1-201ENST00000332955 1621 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
FOXA1P55317 NIPSNAP3A-201ENST00000374767 1633 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
FOXA1P55317 TADA3-204ENST00000440161 1617 ntAPPRIS P1 TSL 2 BASIC13.69□□□□□ -0.22
FOXA1P55317 PHF2-203ENST00000610682 2921 ntTSL 5 BASIC13.69□□□□□ -0.22
FOXA1P55317 ELP4-228ENST00000640954 1612 ntTSL 5 BASIC13.69□□□□□ -0.22
FOXA1P55317 COG5-202ENST00000347053 4532 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
FOXA1P55317 CDC20B-203ENST00000381375 2591 ntAPPRIS ALT1 TSL 1 (best) BASIC13.69□□□□□ -0.22
FOXA1P55317 AL031719.1-201ENST00000623365 2587 ntBASIC13.69□□□□□ -0.22
FOXA1P55317 ATXN7-201ENST00000295900 7224 ntAPPRIS P3 TSL 1 (best) BASIC13.69□□□□□ -0.22
FOXA1P55317 XRCC6-201ENST00000359308 2709 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
FOXA1P55317 PELP1-201ENST00000301396 3673 ntAPPRIS P2 TSL 1 (best) BASIC13.69□□□□□ -0.22
FOXA1P55317 MRPL34-201ENST00000252602 968 ntAPPRIS P2 TSL 1 (best) BASIC13.69□□□□□ -0.22
FOXA1P55317 SMIM11A-203ENST00000399299 1033 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
FOXA1P55317 SNORA50C-201ENST00000408535 133 ntBASIC13.69□□□□□ -0.22
FOXA1P55317 AC016730.1-201ENST00000420828 832 ntTSL 2 BASIC13.69□□□□□ -0.22
FOXA1P55317 RPARP-AS1-201ENST00000473970 1297 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
FOXA1P55317 HLA-J-204ENST00000495278 958 ntBASIC13.69□□□□□ -0.22
FOXA1P55317 UCHL1-207ENST00000508768 827 ntTSL 3 BASIC13.69□□□□□ -0.22
FOXA1P55317 DUX4L45-201ENST00000566406 1057 ntBASIC13.69□□□□□ -0.22
FOXA1P55317 IFT20-209ENST00000579419 787 ntAPPRIS ALT1 TSL 3 BASIC13.69□□□□□ -0.22
FOXA1P55317 AC012645.4-201ENST00000610691 1061 ntBASIC13.69□□□□□ -0.22
FOXA1P55317 ADAMTSL4-AS1-203ENST00000617352 1036 ntTSL 5 BASIC13.69□□□□□ -0.22
FOXA1P55317 SNHG28-203ENST00000621242 708 ntAPPRIS P1 TSL 5 BASIC13.69□□□□□ -0.22
FOXA1P55317 SNORA50.1-201ENST00000628590 135 ntBASIC13.69□□□□□ -0.22
FOXA1P55317 ALDH3A2-226ENST00000631291 3822 ntTSL 5 BASIC13.69□□□□□ -0.22
FOXA1P55317 SIGLEC12-203ENST00000598614 1434 ntTSL 5 BASIC13.69□□□□□ -0.22
FOXA1P55317 RRM2B-211ENST00000621845 3483 ntTSL 2 BASIC13.69□□□□□ -0.22
FOXA1P55317 GRIN1-207ENST00000371560 3640 ntAPPRIS ALT1 TSL 1 (best) BASIC13.69□□□□□ -0.22
FOXA1P55317 HECTD3-202ENST00000372172 3610 ntAPPRIS P1 TSL 5 BASIC13.69□□□□□ -0.22
FOXA1P55317 MSNP1-201ENST00000511640 1732 ntBASIC13.69□□□□□ -0.22
FOXA1P55317 PLA2G4B-201ENST00000452633 2985 ntAPPRIS P1 TSL 5 BASIC13.69□□□□□ -0.22
FOXA1P55317 SYBU-207ENST00000433638 3104 ntAPPRIS ALT2 TSL 5 BASIC13.69□□□□□ -0.22
FOXA1P55317 REV1-202ENST00000393445 4686 ntAPPRIS ALT1 TSL 1 (best) BASIC13.69□□□□□ -0.22
FOXA1P55317 KARS-201ENST00000302445 2005 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
FOXA1P55317 USH1G-202ENST00000614341 3558 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
FOXA1P55317 PTPRH-202ENST00000376350 3877 ntAPPRIS P3 TSL 1 (best) BASIC13.69□□□□□ -0.22
FOXA1P55317 PGM1-202ENST00000371084 2472 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
FOXA1P55317 COPS7B-223ENST00000611614 2468 ntTSL 3 BASIC13.69□□□□□ -0.22
FOXA1P55317 C1S-202ENST00000360817 2635 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
FOXA1P55317 MPRIP-202ENST00000341712 3846 ntAPPRIS P3 TSL 5 BASIC13.69□□□□□ -0.22
FOXA1P55317 FAM167A-AS1-203ENST00000624614 1357 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
FOXA1P55317 LIMS2-209ENST00000410038 1695 ntTSL 2 BASIC13.69□□□□□ -0.22
FOXA1P55317 ALG11-204ENST00000616513 1983 ntTSL 2 BASIC13.69□□□□□ -0.22
FOXA1P55317 AC104758.3-203ENST00000562938 2123 ntBASIC13.69□□□□□ -0.22
FOXA1P55317 SAP30BP-202ENST00000355423 2439 ntTSL 2 BASIC13.69□□□□□ -0.22
FOXA1P55317 ANKZF1-201ENST00000323348 2579 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
FOXA1P55317 MAP7-205ENST00000544465 2744 ntAPPRIS ALT2 TSL 2 BASIC13.69□□□□□ -0.22
FOXA1P55317 ZMYND10-201ENST00000231749 2896 ntAPPRIS P3 TSL 1 (best) BASIC13.69□□□□□ -0.22
FOXA1P55317 DCAF5-209ENST00000557386 2883 ntAPPRIS ALT1 TSL 1 (best) BASIC13.69□□□□□ -0.22
FOXA1P55317 VIPR1-202ENST00000433647 3161 ntTSL 2 BASIC13.69□□□□□ -0.22
FOXA1P55317 NPR1-202ENST00000368680 4236 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
FOXA1P55317 DGCR8-201ENST00000351989 4514 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
FOXA1P55317 PCDHGB7-201ENST00000398594 4765 ntAPPRIS P3 TSL 1 (best) BASIC13.68□□□□□ -0.22
FOXA1P55317 ZNF341-202ENST00000375200 3579 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
FOXA1P55317 ACP7-201ENST00000331256 2966 ntAPPRIS P1 TSL 2 BASIC13.68□□□□□ -0.22
FOXA1P55317 C21orf59-203ENST00000382549 2503 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
FOXA1P55317 C3orf18-206ENST00000449241 2365 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
FOXA1P55317 ZNF568-206ENST00000455427 2378 ntTSL 2 BASIC13.68□□□□□ -0.22
FOXA1P55317 POC5-202ENST00000428202 2229 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
FOXA1P55317 TMEM192-203ENST00000506087 2225 ntTSL 2 BASIC13.68□□□□□ -0.22
FOXA1P55317 NECAP2-202ENST00000443980 1929 ntTSL 2 BASIC13.68□□□□□ -0.22
FOXA1P55317 DDX31-204ENST00000372159 4577 ntAPPRIS P2 TSL 1 (best) BASIC13.68□□□□□ -0.22
FOXA1P55317 CAND2-201ENST00000295989 4429 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
FOXA1P55317 GAD2-203ENST00000376261 5858 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
FOXA1P55317 CDCA3-202ENST00000422785 2760 ntTSL 2 BASIC13.68□□□□□ -0.22
FOXA1P55317 AC092143.1-201ENST00000556922 2776 ntAPPRIS P1 TSL 2 BASIC13.68□□□□□ -0.22
FOXA1P55317 MFSD11-217ENST00000590514 1891 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
FOXA1P55317 CFLAR-206ENST00000395148 4415 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
FOXA1P55317 NUDT16-202ENST00000521288 6108 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
FOXA1P55317 AC092171.2-201ENST00000444210 3251 ntTSL 5 BASIC13.68□□□□□ -0.22
FOXA1P55317 RERG-201ENST00000256953 2264 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
FOXA1P55317 NDUFAB1P1-201ENST00000404262 460 ntBASIC13.68□□□□□ -0.22
FOXA1P55317 TCF20-203ENST00000404876 1058 ntTSL 3 BASIC13.68□□□□□ -0.22
FOXA1P55317 PSTK-202ENST00000405485 1047 ntAPPRIS P2 TSL 2 BASIC13.68□□□□□ -0.22
FOXA1P55317 PARVG-202ENST00000415224 999 ntTSL 2 BASIC13.68□□□□□ -0.22
FOXA1P55317 POM121L10P-201ENST00000436994 1285 ntBASIC13.68□□□□□ -0.22
FOXA1P55317 POLR2F-208ENST00000470701 584 ntTSL 3 BASIC13.68□□□□□ -0.22
FOXA1P55317 RPSAP36-202ENST00000494591 1261 ntBASIC13.68□□□□□ -0.22
FOXA1P55317 AC099482.1-201ENST00000563471 481 ntTSL 2 BASIC13.68□□□□□ -0.22
FOXA1P55317 KLK11-210ENST00000600362 759 ntTSL 3 BASIC13.68□□□□□ -0.22
FOXA1P55317 UBE2F-223ENST00000612130 2135 ntAPPRIS P1 TSL 5 BASIC13.68□□□□□ -0.22
FOXA1P55317 POLD1-214ENST00000613923 3542 ntTSL 5 BASIC13.68□□□□□ -0.22
FOXA1P55317 PBRM1-204ENST00000394830 5071 ntAPPRIS P2 TSL 1 (best) BASIC13.68□□□□□ -0.22
FOXA1P55317 WASHC1-201ENST00000442898 1827 ntAPPRIS P1 TSL 2 BASIC13.68□□□□□ -0.22
FOXA1P55317 AC138761.4-201ENST00000578881 1514 ntTSL 3 BASIC13.68□□□□□ -0.22
FOXA1P55317 GSDMA-203ENST00000635792 1546 ntAPPRIS P1 TSL 5 BASIC13.68□□□□□ -0.22
FOXA1P55317 C7orf57-203ENST00000430738 2056 ntTSL 5 BASIC13.68□□□□□ -0.22
FOXA1P55317 AP000437.1-201ENST00000624057 2085 ntBASIC13.68□□□□□ -0.22
Retrieved 100 of 98,524 protein–RNA pairs in 47.7 ms