Protein–RNA interactions for Protein: P48431

SOX2, Transcription factor SOX-2, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2P48431 AC015712.4-202ENST00000558641 1007 ntTSL 4 BASIC12.52□□□□□ -0.41
SOX2P48431 AC025279.2-201ENST00000569730 653 ntBASIC12.52□□□□□ -0.41
SOX2P48431 PDCD2L-203ENST00000587065 492 ntTSL 3 BASIC12.52□□□□□ -0.41
SOX2P48431 AC010319.3-201ENST00000597028 470 ntBASIC12.52□□□□□ -0.41
SOX2P48431 AC132938.4-201ENST00000623835 848 ntBASIC12.52□□□□□ -0.41
SOX2P48431 TP73-203ENST00000357733 4899 ntTSL 5 BASIC12.52□□□□□ -0.41
SOX2P48431 TSPAN31-201ENST00000257910 1849 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
SOX2P48431 PGAP2-203ENST00000396986 1837 ntTSL 2 BASIC12.52□□□□□ -0.41
SOX2P48431 RPGRIP1-202ENST00000400017 3940 ntAPPRIS P2 TSL 1 (best) BASIC12.52□□□□□ -0.41
SOX2P48431 MNT-201ENST00000174618 4996 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
SOX2P48431 CCND3-215ENST00000511642 2394 ntTSL 2 BASIC12.52□□□□□ -0.41
SOX2P48431 FAM78A-203ENST00000372271 3966 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
SOX2P48431 CENPBD1P1-204ENST00000487264 1308 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
SOX2P48431 ZDHHC11-209ENST00000511539 1303 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
SOX2P48431 DGKZ-204ENST00000454345 4086 ntAPPRIS ALT2 TSL 1 (best) BASIC12.52□□□□□ -0.41
SOX2P48431 CHD5-201ENST00000262450 9646 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
SOX2P48431 LILRB2-202ENST00000391746 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC12.52□□□□□ -0.41
SOX2P48431 RCAN2-204ENST00000405162 2457 ntTSL 5 BASIC12.52□□□□□ -0.41
SOX2P48431 FCHSD1-209ENST00000522783 2477 ntTSL 5 BASIC12.52□□□□□ -0.41
SOX2P48431 NEK4-207ENST00000535191 2452 ntTSL 2 BASIC12.52□□□□□ -0.41
SOX2P48431 AC105345.1-202ENST00000382488 3204 ntTSL 2 BASIC12.52□□□□□ -0.41
SOX2P48431 PSD-202ENST00000406432 3861 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
SOX2P48431 MCPH1-AS1-201ENST00000515608 2147 ntTSL 5 BASIC12.52□□□□□ -0.41
SOX2P48431 CFAP65-203ENST00000409865 2769 ntAPPRIS ALT2 TSL 2 BASIC12.52□□□□□ -0.41
SOX2P48431 KIF17-202ENST00000375044 3572 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
SOX2P48431 AL359845.1-201ENST00000458202 1648 ntBASIC12.51□□□□□ -0.41
SOX2P48431 NME1-209ENST00000511355 1645 ntTSL 5 BASIC12.51□□□□□ -0.41
SOX2P48431 SERPINH1-205ENST00000525876 2283 ntTSL 2 BASIC12.51□□□□□ -0.41
SOX2P48431 RHOH-224ENST00000622175 2254 ntAPPRIS P1 TSL 4 BASIC12.51□□□□□ -0.41
SOX2P48431 DPEP2-202ENST00000393847 1697 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
SOX2P48431 SNX19-213ENST00000534726 1656 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
SOX2P48431 KANK2-205ENST00000589359 3048 ntAPPRIS ALT2 TSL 5 BASIC12.51□□□□□ -0.41
SOX2P48431 GNG4-202ENST00000366598 1721 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
SOX2P48431 PTCHD3-201ENST00000438700 2529 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
SOX2P48431 SPO11-203ENST00000371263 1834 ntAPPRIS P4 TSL 1 (best) BASIC12.51□□□□□ -0.41
SOX2P48431 DDC-214ENST00000622873 1839 ntTSL 3 BASIC12.51□□□□□ -0.41
SOX2P48431 TROVE2-208ENST00000432079 7848 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
SOX2P48431 NECAP2-202ENST00000443980 1929 ntTSL 2 BASIC12.51□□□□□ -0.41
SOX2P48431 MAP2K3-214ENST00000613338 2029 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
SOX2P48431 BAIAP3-207ENST00000562208 3663 ntAPPRIS ALT2 TSL 2 BASIC12.51□□□□□ -0.41
SOX2P48431 CAMKV-215ENST00000488336 2905 ntTSL 2 BASIC12.51□□□□□ -0.41
SOX2P48431 MTMR2-201ENST00000346299 4681 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
SOX2P48431 RHCE-205ENST00000349438 1235 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
SOX2P48431 MAP2K4-201ENST00000353533 3826 ntAPPRIS P3 TSL 1 (best) BASIC12.51□□□□□ -0.41
SOX2P48431 GUK1-206ENST00000366723 845 ntTSL 5 BASIC12.51□□□□□ -0.41
SOX2P48431 CUTA-202ENST00000374496 762 ntAPPRIS P3 TSL 5 BASIC12.51□□□□□ -0.41
SOX2P48431 MTMR2-203ENST00000393223 4681 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
SOX2P48431 LINC00475-203ENST00000417983 703 ntTSL 2 BASIC12.51□□□□□ -0.41
SOX2P48431 RNF144A-AS1-203ENST00000426122 579 ntTSL 4 BASIC12.51□□□□□ -0.41
SOX2P48431 RAD51D-205ENST00000460118 1064 ntTSL 5 BASIC12.51□□□□□ -0.41
SOX2P48431 TMEM176B-206ENST00000492607 1265 ntAPPRIS P1 TSL 5 BASIC12.51□□□□□ -0.41
SOX2P48431 AC105362.1-201ENST00000511234 564 ntTSL 3 BASIC12.51□□□□□ -0.41
SOX2P48431 RNA5SP486-201ENST00000515961 83 ntBASIC12.51□□□□□ -0.41
SOX2P48431 AC022182.2-201ENST00000525556 859 ntTSL 2 BASIC12.51□□□□□ -0.41
SOX2P48431 ACRV1-202ENST00000527795 782 ntAPPRIS ALT2 TSL 2 BASIC12.51□□□□□ -0.41
SOX2P48431 ANAPC15-208ENST00000538393 867 ntAPPRIS P3 TSL 2 BASIC12.51□□□□□ -0.41
SOX2P48431 LINC02560-201ENST00000596379 459 ntBASIC12.51□□□□□ -0.41
SOX2P48431 AL358472.3-201ENST00000608147 415 ntBASIC12.51□□□□□ -0.41
SOX2P48431 LCN8-205ENST00000612714 638 ntAPPRIS ALT2 TSL 1 (best) BASIC12.51□□□□□ -0.41
SOX2P48431 LGALS9-201ENST00000302228 3018 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
SOX2P48431 PRAME-202ENST00000398743 2196 ntAPPRIS P2 TSL 1 (best) BASIC12.51□□□□□ -0.41
SOX2P48431 SLC25A36-201ENST00000324194 1301 ntAPPRIS ALT1 TSL 1 (best) BASIC12.51□□□□□ -0.41
SOX2P48431 OFD1-202ENST00000380550 3296 ntAPPRIS ALT2 TSL 1 (best) BASIC12.51□□□□□ -0.41
SOX2P48431 STYXL1-201ENST00000248600 1415 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
SOX2P48431 HARS2-202ENST00000448069 1426 ntTSL 2 BASIC12.51□□□□□ -0.41
SOX2P48431 ZNF426-204ENST00000593003 2402 ntAPPRIS ALT2 TSL 1 (best) BASIC12.51□□□□□ -0.41
SOX2P48431 CTIF-202ENST00000382998 4407 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
SOX2P48431 MKRN5P-201ENST00000445263 1467 ntBASIC12.51□□□□□ -0.41
SOX2P48431 BDH1-202ENST00000392378 3455 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
SOX2P48431 SLC22A2-202ENST00000366953 2597 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
SOX2P48431 PLCD4-202ENST00000417849 2738 ntAPPRIS P2 TSL 5 BASIC12.51□□□□□ -0.41
SOX2P48431 HOXC4-202ENST00000430889 1666 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
SOX2P48431 PRKN-205ENST00000366897 2877 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
SOX2P48431 FBXO15-201ENST00000419743 1708 ntAPPRIS P2 TSL 2 BASIC12.51□□□□□ -0.41
SOX2P48431 RNF216-205ENST00000425013 5639 ntAPPRIS ALT2 TSL 1 (best) BASIC12.51□□□□□ -0.41
SOX2P48431 HDLBP-204ENST00000391976 4489 ntAPPRIS P1 TSL 5 BASIC12.51□□□□□ -0.41
SOX2P48431 ZNF501-205ENST00000620116 3382 ntAPPRIS P1 TSL 4 BASIC12.5□□□□□ -0.41
SOX2P48431 HERC5-201ENST00000264350 3513 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
SOX2P48431 POC5-202ENST00000428202 2229 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
SOX2P48431 CNTNAP5-202ENST00000431078 5284 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
SOX2P48431 SPATA7-217ENST00000556553 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC12.5□□□□□ -0.41
SOX2P48431 HSPA6-201ENST00000309758 2371 ntAPPRIS P1 BASIC12.5□□□□□ -0.41
SOX2P48431 DMTF1-202ENST00000394703 4038 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
SOX2P48431 ASB2-201ENST00000315988 2743 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
SOX2P48431 AC092143.1-201ENST00000556922 2776 ntAPPRIS P1 TSL 2 BASIC12.5□□□□□ -0.41
SOX2P48431 TCF23-201ENST00000296096 4882 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
SOX2P48431 IFT81-202ENST00000361948 3048 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
SOX2P48431 MGAT1-205ENST00000446023 3175 ntAPPRIS P1 TSL 2 BASIC12.5□□□□□ -0.41
SOX2P48431 DIAPH2-202ENST00000355827 3782 ntAPPRIS ALT2 TSL 5 BASIC12.5□□□□□ -0.41
SOX2P48431 AIP-201ENST00000279146 1221 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
SOX2P48431 ZBTB12BP-201ENST00000314232 1122 ntBASIC12.5□□□□□ -0.41
SOX2P48431 MBP-203ENST00000359645 1255 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
SOX2P48431 APOA1-204ENST00000375323 1088 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
SOX2P48431 FAM159B-201ENST00000389074 847 ntAPPRIS P1 TSL 2 BASIC12.5□□□□□ -0.41
SOX2P48431 IFI27L1-201ENST00000393115 674 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
SOX2P48431 MAPK15-203ENST00000395108 765 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
SOX2P48431 SELENOM-201ENST00000400299 694 ntAPPRIS P2 TSL 1 (best) BASIC12.5□□□□□ -0.41
SOX2P48431 MCFD2-204ENST00000409207 1113 ntAPPRIS P1 TSL 2 BASIC12.5□□□□□ -0.41
SOX2P48431 SKA2-202ENST00000437036 625 ntTSL 2 BASIC12.5□□□□□ -0.41
SOX2P48431 FXYD1-202ENST00000455515 594 ntAPPRIS P1 TSL 2 BASIC12.5□□□□□ -0.41
Retrieved 100 of 98,524 protein–RNA pairs in 66.3 ms