Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 MYH6-202ENST00000405093 5941 ntAPPRIS P1 TSL 5 BASIC14.87□□□□□ -0.03
BDNFP23560 PPP1R1B-203ENST00000394267 1504 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
BDNFP23560 FTX-216ENST00000638985 1367 ntTSL 5 BASIC14.87□□□□□ -0.03
BDNFP23560 RNF41-202ENST00000394013 2452 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
BDNFP23560 AC005840.4-201ENST00000541242 2494 ntBASIC14.87□□□□□ -0.03
BDNFP23560 FAM84B-201ENST00000304916 5404 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
BDNFP23560 SELENOV-202ENST00000423711 1701 ntTSL 5 BASIC14.87□□□□□ -0.03
BDNFP23560 MARVELD2-203ENST00000436532 1563 ntTSL 5 BASIC14.87□□□□□ -0.03
BDNFP23560 PUF60-209ENST00000527197 1559 ntTSL 5 BASIC14.87□□□□□ -0.03
BDNFP23560 RNF182-208ENST00000544682 3495 ntAPPRIS P1 TSL 4 BASIC14.87□□□□□ -0.03
BDNFP23560 SPIDR-201ENST00000297423 3988 ntAPPRIS P3 TSL 1 (best) BASIC14.87□□□□□ -0.03
BDNFP23560 MT1H-201ENST00000332374 397 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
BDNFP23560 FAM163B-201ENST00000356873 1131 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
BDNFP23560 Metazoa_SRP.4-201ENST00000366232 298 ntBASIC14.87□□□□□ -0.03
BDNFP23560 GYPC-203ENST00000409836 932 ntAPPRIS ALT2 TSL 1 (best) BASIC14.87□□□□□ -0.03
BDNFP23560 ACTG2-204ENST00000409918 927 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
BDNFP23560 TMEM219-202ENST00000414689 1024 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
BDNFP23560 NSD2-209ENST00000436793 835 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
BDNFP23560 AL391415.1-201ENST00000439844 400 ntTSL 3 BASIC14.87□□□□□ -0.03
BDNFP23560 TEX36-AS1-202ENST00000446081 749 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
BDNFP23560 RPL7P35-201ENST00000446943 740 ntBASIC14.87□□□□□ -0.03
BDNFP23560 ARMCX3-AS1-201ENST00000454228 490 ntTSL 3 BASIC14.87□□□□□ -0.03
BDNFP23560 TXNRD2-206ENST00000462330 1129 ntTSL 3 BASIC14.87□□□□□ -0.03
BDNFP23560 AC008267.1-201ENST00000474858 1069 ntBASIC14.87□□□□□ -0.03
BDNFP23560 KCNT1-207ENST00000487664 3845 ntAPPRIS ALT2 TSL 5 BASIC14.87□□□□□ -0.03
BDNFP23560 TMEM219-204ENST00000566848 1292 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
BDNFP23560 AIPL1-211ENST00000576776 1190 ntAPPRIS ALT2 TSL 1 (best) BASIC14.87□□□□□ -0.03
BDNFP23560 TMEM98-205ENST00000578289 806 ntTSL 3 BASIC14.87□□□□□ -0.03
BDNFP23560 AC015917.2-201ENST00000580714 493 ntTSL 3 BASIC14.87□□□□□ -0.03
BDNFP23560 ZNF530-203ENST00000597864 634 ntTSL 2 BASIC14.87□□□□□ -0.03
BDNFP23560 AC010422.5-201ENST00000597961 585 ntAPPRIS P1 TSL 4 BASIC14.87□□□□□ -0.03
BDNFP23560 AC107464.3-201ENST00000609172 737 ntBASIC14.87□□□□□ -0.03
BDNFP23560 PSMD5-208ENST00000625444 219 ntTSL 5 BASIC14.87□□□□□ -0.03
BDNFP23560 NTRK2-201ENST00000277120 8633 ntAPPRIS P3 TSL 1 (best) BASIC14.87□□□□□ -0.03
BDNFP23560 HAND2-AS1-202ENST00000502896 5278 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
BDNFP23560 MTA3-203ENST00000406652 5484 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
BDNFP23560 GDF9-201ENST00000296875 1796 ntTSL 5 BASIC14.87□□□□□ -0.03
BDNFP23560 PORCN-201ENST00000326194 1755 ntAPPRIS P4 TSL 1 (best) BASIC14.87□□□□□ -0.03
BDNFP23560 TPM2-204ENST00000378300 1771 ntTSL 3 BASIC14.87□□□□□ -0.03
BDNFP23560 LINC00910-206ENST00000592135 2438 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
BDNFP23560 NCF4-202ENST00000397147 1641 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
BDNFP23560 ILDR1-205ENST00000462014 1612 ntAPPRIS ALT2 TSL 1 (best) BASIC14.87□□□□□ -0.03
BDNFP23560 GPR132-203ENST00000539291 2779 ntAPPRIS P3 TSL 2 BASIC14.87□□□□□ -0.03
BDNFP23560 CDYL-205ENST00000449732 2139 ntTSL 2 BASIC14.87□□□□□ -0.03
BDNFP23560 ERLIN1-202ENST00000407654 1453 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
BDNFP23560 IL21R-AS1-201ENST00000563191 2615 ntTSL 2 BASIC14.87□□□□□ -0.03
BDNFP23560 XPNPEP1-201ENST00000322238 2467 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
BDNFP23560 NELFA-202ENST00000382882 3343 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
BDNFP23560 SLC46A3-201ENST00000266943 3173 ntAPPRIS P3 TSL 1 (best) BASIC14.87□□□□□ -0.03
BDNFP23560 PNPLA5-201ENST00000216177 2539 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
BDNFP23560 JARID2-202ENST00000397311 5595 ntAPPRIS ALT2 TSL 2 BASIC14.87□□□□□ -0.03
BDNFP23560 GGA1-206ENST00000406772 3205 ntTSL 2 BASIC14.87□□□□□ -0.03
BDNFP23560 OSBP2-219ENST00000535268 3248 ntTSL 2 BASIC14.87□□□□□ -0.03
BDNFP23560 FGF12-207ENST00000454309 3058 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
BDNFP23560 CYP26A1-202ENST00000371531 2245 ntTSL 2 BASIC14.86□□□□□ -0.03
BDNFP23560 LHFPL3-201ENST00000401970 1378 ntAPPRIS ALT1 TSL 1 (best) BASIC14.86□□□□□ -0.03
BDNFP23560 FAM163A-201ENST00000341785 2909 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
BDNFP23560 LINC01010-201ENST00000431422 2069 ntTSL 2 BASIC14.86□□□□□ -0.03
BDNFP23560 CLASRP-204ENST00000544944 2769 ntAPPRIS ALT2 TSL 2 BASIC14.86□□□□□ -0.03
BDNFP23560 CCT7-201ENST00000258091 1916 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
BDNFP23560 FRMD8-202ENST00000355991 3514 ntTSL 2 BASIC14.86□□□□□ -0.03
BDNFP23560 NALCN-AS1-201ENST00000457843 2846 ntTSL 2 BASIC14.86□□□□□ -0.03
BDNFP23560 TBL3-208ENST00000615855 2472 ntTSL 5 BASIC14.86□□□□□ -0.03
BDNFP23560 CSRP1-202ENST00000367306 2129 ntAPPRIS P1 TSL 5 BASIC14.86□□□□□ -0.03
BDNFP23560 SHMT2-203ENST00000449049 2121 ntTSL 2 BASIC14.86□□□□□ -0.03
BDNFP23560 B3GNT7-201ENST00000287590 3706 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
BDNFP23560 PLEKHO2-201ENST00000323544 3720 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
BDNFP23560 BORCS8-202ENST00000462790 1429 ntAPPRIS P3 TSL 1 (best) BASIC14.86□□□□□ -0.03
BDNFP23560 RILPL1-202ENST00000376874 3932 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
BDNFP23560 ATRN-202ENST00000446916 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
BDNFP23560 SUSD5-201ENST00000309558 5008 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
BDNFP23560 NEDD4L-205ENST00000400345 3647 ntAPPRIS P4 TSL 1 (best) BASIC14.86□□□□□ -0.03
BDNFP23560 FBXO44-203ENST00000376760 822 ntTSL 2 BASIC14.86□□□□□ -0.03
BDNFP23560 HIST2H2BA-201ENST00000412169 381 ntBASIC14.86□□□□□ -0.03
BDNFP23560 FLJ37035-201ENST00000419400 446 ntTSL 3 BASIC14.86□□□□□ -0.03
BDNFP23560 CHID1-202ENST00000429789 1289 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
BDNFP23560 SAP30L-203ENST00000440364 792 ntTSL 3 BASIC14.86□□□□□ -0.03
BDNFP23560 AL512330.1-201ENST00000456701 349 ntTSL 3 BASIC14.86□□□□□ -0.03
BDNFP23560 RPL18AP3-201ENST00000462885 528 ntBASIC14.86□□□□□ -0.03
BDNFP23560 FRMD4A-204ENST00000475141 1233 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
BDNFP23560 LINC02062-201ENST00000513175 478 ntTSL 3 BASIC14.86□□□□□ -0.03
BDNFP23560 NEU3-207ENST00000534628 746 ntTSL 2 BASIC14.86□□□□□ -0.03
BDNFP23560 TCL1A-205ENST00000555202 717 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
BDNFP23560 NPM1P43-201ENST00000558669 786 ntBASIC14.86□□□□□ -0.03
BDNFP23560 AC090825.1-202ENST00000560059 665 ntTSL 3 BASIC14.86□□□□□ -0.03
BDNFP23560 COX10-AS1-206ENST00000602743 576 ntTSL 5 BASIC14.86□□□□□ -0.03
BDNFP23560 C1orf232-202ENST00000635463 466 ntAPPRIS ALT2 TSL 2 BASIC14.86□□□□□ -0.03
BDNFP23560 AC011491.1-203ENST00000637688 543 ntBASIC14.86□□□□□ -0.03
BDNFP23560 SREBF1-205ENST00000395757 3696 ntAPPRIS ALT2 TSL 2 BASIC14.86□□□□□ -0.03
BDNFP23560 NOC2L-201ENST00000327044 2790 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
BDNFP23560 CDK11B-203ENST00000341832 2998 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
BDNFP23560 FGGY-204ENST00000371218 2052 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
BDNFP23560 RELL1-201ENST00000314117 1326 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
BDNFP23560 PCDH10-203ENST00000618019 4574 ntAPPRIS ALT2 BASIC14.86□□□□□ -0.03
BDNFP23560 RTFDC1-201ENST00000023939 1745 ntTSL 2 BASIC14.86□□□□□ -0.03
BDNFP23560 ARID3B-206ENST00000622429 4243 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
BDNFP23560 NEDD4L-238ENST00000635997 4402 ntTSL 5 BASIC14.86□□□□□ -0.03
BDNFP23560 AL928654.5-201ENST00000624831 2501 ntBASIC14.86□□□□□ -0.03
BDNFP23560 USP19-205ENST00000398898 4474 ntAPPRIS ALT2 TSL 5 BASIC14.86□□□□□ -0.03
BDNFP23560 FAM186B-201ENST00000257894 2944 ntAPPRIS P2 TSL 1 (best) BASIC14.86□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 42 ms