Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 AC090617.4-201ENST00000572404 422 ntTSL 3 BASIC14.45□□□□□ -0.1
HMGA1P17096 AC087741.1-205ENST00000572730 750 ntTSL 3 BASIC14.45□□□□□ -0.1
HMGA1P17096 AP005131.2-201ENST00000589045 487 ntTSL 2 BASIC14.45□□□□□ -0.1
HMGA1P17096 AC011479.1-202ENST00000591889 528 ntAPPRIS P1 TSL 2 BASIC14.45□□□□□ -0.1
HMGA1P17096 SOX2-OT-222ENST00000595084 853 ntTSL 5 BASIC14.45□□□□□ -0.1
HMGA1P17096 SOX2-OT-232ENST00000600386 792 ntTSL 5 BASIC14.45□□□□□ -0.1
HMGA1P17096 ANKRD36C-208ENST00000619511 737 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
HMGA1P17096 RUFY2-203ENST00000388768 4502 ntTSL 2 BASIC14.45□□□□□ -0.1
HMGA1P17096 ZNF367-201ENST00000375256 3646 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
HMGA1P17096 ANKRD23-201ENST00000318357 2597 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
HMGA1P17096 ZMYND15-206ENST00000592813 2274 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
HMGA1P17096 CDYL-205ENST00000449732 2139 ntTSL 2 BASIC14.45□□□□□ -0.1
HMGA1P17096 RBFOX3-203ENST00000580155 1519 ntAPPRIS P2 TSL 2 BASIC14.45□□□□□ -0.1
HMGA1P17096 SUOX-201ENST00000266971 2364 ntAPPRIS P1 TSL 2 BASIC14.45□□□□□ -0.1
HMGA1P17096 PARP3-203ENST00000431474 2360 ntAPPRIS P3 TSL 1 (best) BASIC14.45□□□□□ -0.1
HMGA1P17096 SUOX-208ENST00000548274 2352 ntAPPRIS P1 TSL 5 BASIC14.45□□□□□ -0.1
HMGA1P17096 PSD-209ENST00000611678 3382 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
HMGA1P17096 MLXIPL-203ENST00000354613 3215 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
HMGA1P17096 GABRA1-201ENST00000023897 2083 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
HMGA1P17096 TMUB2-202ENST00000357984 1921 ntAPPRIS P3 TSL 1 (best) BASIC14.45□□□□□ -0.1
HMGA1P17096 UBE4B-201ENST00000253251 4772 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
HMGA1P17096 SYT4-205ENST00000590752 1765 ntTSL 2 BASIC14.45□□□□□ -0.1
HMGA1P17096 FAM45BP-202ENST00000592932 1624 ntBASIC14.44□□□□□ -0.1
HMGA1P17096 FLI1-207ENST00000534087 3859 ntTSL 2 BASIC14.44□□□□□ -0.1
HMGA1P17096 HTR7-203ENST00000371719 3033 ntAPPRIS ALT1 TSL 1 (best) BASIC14.44□□□□□ -0.1
HMGA1P17096 FAM120A-202ENST00000375389 3585 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
HMGA1P17096 COMP-203ENST00000542601 2707 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
HMGA1P17096 SVIL-AS1-204ENST00000427063 2025 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
HMGA1P17096 PPP6R1-203ENST00000587283 2953 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
HMGA1P17096 ITSN1-205ENST00000381291 5437 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
HMGA1P17096 PHF2-203ENST00000610682 2921 ntTSL 5 BASIC14.44□□□□□ -0.1
HMGA1P17096 PRKD1-202ENST00000415220 3189 ntAPPRIS ALT2 TSL 5 BASIC14.44□□□□□ -0.1
HMGA1P17096 SLC4A2-214ENST00000485713 4925 ntAPPRIS P3 TSL 1 (best) BASIC14.44□□□□□ -0.1
HMGA1P17096 NUDT2-201ENST00000346365 960 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
HMGA1P17096 S100A3-202ENST00000368713 856 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
HMGA1P17096 HMGCLL1-203ENST00000370850 1171 ntTSL 2 BASIC14.44□□□□□ -0.1
HMGA1P17096 IFNLR1-203ENST00000374418 674 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
HMGA1P17096 NUDT2-202ENST00000379155 1002 ntAPPRIS P1 TSL 3 BASIC14.44□□□□□ -0.1
HMGA1P17096 GAPDH-204ENST00000396859 1256 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
HMGA1P17096 AL137026.2-201ENST00000437014 841 ntTSL 2 BASIC14.44□□□□□ -0.1
HMGA1P17096 BX322557.2-201ENST00000445242 379 ntTSL 3 BASIC14.44□□□□□ -0.1
HMGA1P17096 GULOP-201ENST00000454030 748 ntBASIC14.44□□□□□ -0.1
HMGA1P17096 MRPL43-211ENST00000477279 903 ntTSL 2 BASIC14.44□□□□□ -0.1
HMGA1P17096 CD44-224ENST00000526669 870 ntTSL 5 BASIC14.44□□□□□ -0.1
HMGA1P17096 MIR3940-201ENST00000579148 102 ntBASIC14.44□□□□□ -0.1
HMGA1P17096 APOC4-202ENST00000592954 615 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
HMGA1P17096 NUDT2-204ENST00000618590 825 ntAPPRIS P1 TSL 3 BASIC14.44□□□□□ -0.1
HMGA1P17096 SALL4P6-201ENST00000429385 1691 ntBASIC14.44□□□□□ -0.1
HMGA1P17096 LINC01535-206ENST00000592712 1699 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
HMGA1P17096 NT5C3A-213ENST00000610140 1670 ntAPPRIS ALT1 TSL 1 (best) BASIC14.44□□□□□ -0.1
HMGA1P17096 AC040160.2-201ENST00000623816 1675 ntBASIC14.44□□□□□ -0.1
HMGA1P17096 CWC27-201ENST00000381070 2078 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
HMGA1P17096 SCAMP2-201ENST00000268099 2453 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
HMGA1P17096 CACNA1A-258ENST00000638029 7814 ntAPPRIS ALT2 TSL 5 BASIC14.44□□□□□ -0.1
HMGA1P17096 GTF2H1-203ENST00000453096 2707 ntAPPRIS P1 TSL 2 BASIC14.44□□□□□ -0.1
HMGA1P17096 CTSV-201ENST00000259470 1546 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
HMGA1P17096 SELENBP1-208ENST00000447402 1530 ntTSL 2 BASIC14.44□□□□□ -0.1
HMGA1P17096 ZHX1-201ENST00000297857 5200 ntAPPRIS P1 TSL 5 BASIC14.44□□□□□ -0.1
HMGA1P17096 AHR-201ENST00000242057 6276 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
HMGA1P17096 KIF19-202ENST00000389916 3643 ntAPPRIS P1 TSL 5 BASIC14.44□□□□□ -0.1
HMGA1P17096 CAPN14-202ENST00000403897 2197 ntAPPRIS P1 TSL 2 BASIC14.44□□□□□ -0.1
HMGA1P17096 AC092535.1-201ENST00000417557 2165 ntTSL 2 BASIC14.44□□□□□ -0.1
HMGA1P17096 GPR83-201ENST00000243673 4282 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
HMGA1P17096 PAPSS2-202ENST00000456849 3856 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
HMGA1P17096 POLM-202ENST00000335195 2444 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
HMGA1P17096 AC099063.4-201ENST00000641099 1602 ntBASIC14.44□□□□□ -0.1
HMGA1P17096 GLP2R-204ENST00000574745 1882 ntTSL 2 BASIC14.44□□□□□ -0.1
HMGA1P17096 PAIP2-201ENST00000265192 1459 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
HMGA1P17096 AF013593.1-201ENST00000458074 1487 ntBASIC14.44□□□□□ -0.1
HMGA1P17096 PATZ1-202ENST00000266269 3781 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
HMGA1P17096 MAPK7-202ENST00000308406 3149 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
HMGA1P17096 TC2N-201ENST00000340892 4708 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
HMGA1P17096 ACSM1-201ENST00000307493 2051 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
HMGA1P17096 MORN4-201ENST00000307450 2315 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
HMGA1P17096 RBM14-201ENST00000310137 2828 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
HMGA1P17096 PCDHB13-201ENST00000341948 5061 ntAPPRIS P1 BASIC14.43□□□□□ -0.1
HMGA1P17096 TMTC1-207ENST00000552618 3915 ntTSL 5 BASIC14.43□□□□□ -0.1
HMGA1P17096 ADRB2-201ENST00000305988 3443 ntAPPRIS P1 BASIC14.43□□□□□ -0.1
HMGA1P17096 SPHK2-210ENST00000599748 2683 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
HMGA1P17096 IFT22-210ENST00000517481 1657 ntTSL 2 BASIC14.43□□□□□ -0.1
HMGA1P17096 PHKG1-201ENST00000297373 1431 ntAPPRIS P2 TSL 1 (best) BASIC14.43□□□□□ -0.1
HMGA1P17096 CTBP1-209ENST00000510568 4250 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
HMGA1P17096 RNF34-211ENST00000613529 1449 ntTSL 2 BASIC14.43□□□□□ -0.1
HMGA1P17096 TBK1-201ENST00000331710 3256 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
HMGA1P17096 RASGRF1-203ENST00000558480 6237 ntAPPRIS P1 TSL 2 BASIC14.43□□□□□ -0.1
HMGA1P17096 ZMIZ1-AS1-203ENST00000456353 2878 ntTSL 2 BASIC14.43□□□□□ -0.1
HMGA1P17096 UPK1A-201ENST00000222275 1223 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
HMGA1P17096 SULT1A1-201ENST00000314752 1162 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
HMGA1P17096 NUDT2-203ENST00000379158 1075 ntAPPRIS P1 TSL 3 BASIC14.43□□□□□ -0.1
HMGA1P17096 IGHV5-51-201ENST00000390626 410 ntAPPRIS P1 BASIC14.43□□□□□ -0.1
HMGA1P17096 AL161733.1-201ENST00000421067 462 ntTSL 3 BASIC14.43□□□□□ -0.1
HMGA1P17096 MRAS-205ENST00000474559 856 ntAPPRIS P1 TSL 3 BASIC14.43□□□□□ -0.1
HMGA1P17096 TRPC7-AS1-201ENST00000514459 460 ntTSL 3 BASIC14.43□□□□□ -0.1
HMGA1P17096 AC022182.2-201ENST00000525556 859 ntTSL 2 BASIC14.43□□□□□ -0.1
HMGA1P17096 BAK1P2-201ENST00000532665 631 ntBASIC14.43□□□□□ -0.1
HMGA1P17096 BID-209ENST00000551952 700 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
HMGA1P17096 AL359219.1-201ENST00000556311 934 ntBASIC14.43□□□□□ -0.1
HMGA1P17096 AC005777.1-201ENST00000588332 187 ntBASIC14.43□□□□□ -0.1
HMGA1P17096 AP005264.6-204ENST00000588436 719 ntBASIC14.43□□□□□ -0.1
HMGA1P17096 NMRK2-202ENST00000593949 869 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
Retrieved 100 of 98,524 protein–RNA pairs in 66.5 ms