Protein–RNA interactions for Protein: P09341

CXCL1, Growth-regulated alpha protein, humanhuman

Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1P09341 SIRPA-204ENST00000622179 4570 ntAPPRIS ALT1 TSL 5 BASIC10.99□□□□□ -0.65
CXCL1P09341 RPS6KC1-209ENST00000615329 4022 ntTSL 1 (best) BASIC10.99□□□□□ -0.65
CXCL1P09341 NSUN4-204ENST00000474844 2150 ntAPPRIS P1 TSL 1 (best) BASIC10.99□□□□□ -0.65
CXCL1P09341 AC005906.2-201ENST00000640877 3408 ntTSL 5 BASIC10.99□□□□□ -0.65
CXCL1P09341 CEP63-215ENST00000606977 2800 ntAPPRIS P3 TSL 5 BASIC10.99□□□□□ -0.65
CXCL1P09341 OR52A1-202ENST00000380367 9783 ntAPPRIS P1 BASIC10.99□□□□□ -0.65
CXCL1P09341 DMBX1-201ENST00000360032 2880 ntAPPRIS P2 TSL 1 (best) BASIC10.99□□□□□ -0.65
CXCL1P09341 TGOLN2-204ENST00000409015 2276 ntAPPRIS ALT2 TSL 1 (best) BASIC10.98□□□□□ -0.65
CXCL1P09341 ZNF555-203ENST00000591539 2270 ntAPPRIS ALT2 TSL 2 BASIC10.98□□□□□ -0.65
CXCL1P09341 LSS-201ENST00000356396 2995 ntAPPRIS P1 TSL 1 (best) BASIC10.98□□□□□ -0.65
CXCL1P09341 CICP2-201ENST00000420675 2328 ntBASIC10.98□□□□□ -0.65
CXCL1P09341 SLC12A6-205ENST00000458406 4425 ntTSL 1 (best) BASIC10.98□□□□□ -0.65
CXCL1P09341 BAIAP3-215ENST00000568887 3763 ntTSL 2 BASIC10.98□□□□□ -0.65
CXCL1P09341 ARHGAP24-203ENST00000395184 4661 ntAPPRIS P1 TSL 2 BASIC10.98□□□□□ -0.65
CXCL1P09341 EVA1A-201ENST00000233712 1815 ntAPPRIS P2 TSL 2 BASIC10.98□□□□□ -0.65
CXCL1P09341 DBF4B-202ENST00000393547 1810 ntAPPRIS ALT2 TSL 1 (best) BASIC10.98□□□□□ -0.65
CXCL1P09341 IRF9-202ENST00000396864 1838 ntAPPRIS P1 TSL 1 (best) BASIC10.98□□□□□ -0.65
CXCL1P09341 ITFG1-204ENST00000544001 1849 ntTSL 2 BASIC10.98□□□□□ -0.65
CXCL1P09341 URGCP-201ENST00000336086 5658 ntAPPRIS P3 TSL 1 (best) BASIC10.98□□□□□ -0.65
CXCL1P09341 P2RY8-201ENST00000381297 4198 ntAPPRIS P1 TSL 1 (best) BASIC10.98□□□□□ -0.65
CXCL1P09341 CPSF6-203ENST00000456847 1915 ntTSL 5 BASIC10.98□□□□□ -0.65
CXCL1P09341 GPRC5A-201ENST00000014914 7362 ntAPPRIS P1 TSL 1 (best) BASIC10.98□□□□□ -0.65
CXCL1P09341 SNCAIP-222ENST00000542191 2729 ntTSL 5 BASIC10.98□□□□□ -0.65
CXCL1P09341 LDLR-203ENST00000535915 2768 ntTSL 2 BASIC10.98□□□□□ -0.65
CXCL1P09341 STRA6-201ENST00000323940 2864 ntAPPRIS P1 TSL 2 BASIC10.98□□□□□ -0.65
CXCL1P09341 ODF2-213ENST00000448249 2059 ntTSL 2 BASIC10.98□□□□□ -0.65
CXCL1P09341 UBE2L3-204ENST00000545681 2932 ntTSL 2 BASIC10.98□□□□□ -0.65
CXCL1P09341 C11orf88-202ENST00000375618 712 ntAPPRIS ALT2 TSL 1 (best) BASIC10.98□□□□□ -0.65
CXCL1P09341 WT1-AS-201ENST00000395900 3828 ntTSL 2 BASIC10.98□□□□□ -0.65
CXCL1P09341 SERF2-209ENST00000409646 559 ntTSL 4 BASIC10.98□□□□□ -0.65
CXCL1P09341 AC005281.1-201ENST00000433040 911 ntTSL 5 BASIC10.98□□□□□ -0.65
CXCL1P09341 C11orf74-203ENST00000446510 1062 ntAPPRIS P3 TSL 5 BASIC10.98□□□□□ -0.65
CXCL1P09341 NDUFB2-202ENST00000460088 420 ntTSL 3 BASIC10.98□□□□□ -0.65
CXCL1P09341 LY6E-204ENST00000519546 971 ntTSL 2 BASIC10.98□□□□□ -0.65
CXCL1P09341 PNOC-204ENST00000522209 1007 ntTSL 2 BASIC10.98□□□□□ -0.65
CXCL1P09341 C11orf98-202ENST00000525675 405 ntTSL 2 BASIC10.98□□□□□ -0.65
CXCL1P09341 C17orf49-209ENST00000552775 779 ntTSL 5 BASIC10.98□□□□□ -0.65
CXCL1P09341 SORD2P-201ENST00000558556 1069 ntBASIC10.98□□□□□ -0.65
CXCL1P09341 SNHG15-206ENST00000580528 1073 ntTSL 2 BASIC10.98□□□□□ -0.65
CXCL1P09341 FBXL12-202ENST00000585379 956 ntTSL 2 BASIC10.98□□□□□ -0.65
CXCL1P09341 AL158212.4-201ENST00000624062 1286 ntBASIC10.98□□□□□ -0.65
CXCL1P09341 CCR7-201ENST00000246657 2173 ntAPPRIS P1 TSL 1 (best) BASIC10.98□□□□□ -0.65
CXCL1P09341 TSPEAR-201ENST00000323084 3967 ntAPPRIS P1 TSL 1 (best) BASIC10.98□□□□□ -0.65
CXCL1P09341 PAAF1-201ENST00000310571 4994 ntAPPRIS P1 TSL 1 (best) BASIC10.98□□□□□ -0.65
CXCL1P09341 KDM3A-216ENST00000542128 4311 ntTSL 5 BASIC10.98□□□□□ -0.65
CXCL1P09341 MTUS1-204ENST00000381869 6256 ntTSL 5 BASIC10.98□□□□□ -0.65
CXCL1P09341 ZNF771-204ENST00000566625 2415 ntTSL 1 (best) BASIC10.98□□□□□ -0.65
CXCL1P09341 NUP160-201ENST00000378460 5376 ntAPPRIS P2 TSL 1 (best) BASIC10.98□□□□□ -0.65
CXCL1P09341 RBMXL3-201ENST00000424776 3442 ntAPPRIS P1 BASIC10.98□□□□□ -0.65
CXCL1P09341 AC090286.1-201ENST00000354432 1489 ntTSL 1 (best) BASIC10.98□□□□□ -0.65
CXCL1P09341 PLEKHG5-202ENST00000377725 3475 ntAPPRIS ALT2 TSL 1 (best) BASIC10.98□□□□□ -0.65
CXCL1P09341 PAQR3-209ENST00000512733 9811 ntAPPRIS P1 TSL 1 (best) BASIC10.98□□□□□ -0.65
CXCL1P09341 SLC25A25-205ENST00000432073 3678 ntTSL 1 (best) BASIC10.98□□□□□ -0.65
CXCL1P09341 TDRKH-204ENST00000368825 2651 ntTSL 2 BASIC10.98□□□□□ -0.65
CXCL1P09341 STRA6-204ENST00000423167 2776 ntTSL 1 (best) BASIC10.98□□□□□ -0.65
CXCL1P09341 ACIN1-222ENST00000557515 2751 ntTSL 5 BASIC10.98□□□□□ -0.65
CXCL1P09341 CYP2E1-201ENST00000252945 1667 ntAPPRIS P1 TSL 1 (best) BASIC10.98□□□□□ -0.65
CXCL1P09341 AL138799.1-201ENST00000448213 1675 ntBASIC10.98□□□□□ -0.65
CXCL1P09341 SESN3-203ENST00000536441 9558 ntAPPRIS P1 TSL 2 BASIC10.98□□□□□ -0.65
CXCL1P09341 CAGE1-201ENST00000296742 2821 ntAPPRIS P3 TSL 1 (best) BASIC10.98□□□□□ -0.65
CXCL1P09341 ARHGEF33-201ENST00000398800 4300 ntAPPRIS P1 TSL 5 BASIC10.98□□□□□ -0.65
CXCL1P09341 LINC00656-201ENST00000443744 1896 ntTSL 1 (best) BASIC10.98□□□□□ -0.65
CXCL1P09341 PRPF40B-202ENST00000380281 3154 ntAPPRIS ALT2 TSL 1 (best) BASIC10.98□□□□□ -0.65
CXCL1P09341 LINC00662-206ENST00000590523 2053 ntTSL 1 (best) BASIC10.97□□□□□ -0.65
CXCL1P09341 MED14-201ENST00000324817 7984 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
CXCL1P09341 CACNA1G-227ENST00000513964 6735 ntAPPRIS ALT2 TSL 1 (best) BASIC10.97□□□□□ -0.65
CXCL1P09341 LINC01987-201ENST00000593118 2281 ntTSL 2 BASIC10.97□□□□□ -0.65
CXCL1P09341 CACNB3-204ENST00000547230 2395 ntTSL 3 BASIC10.97□□□□□ -0.65
CXCL1P09341 SEPT9-207ENST00000449803 3996 ntTSL 2 BASIC10.97□□□□□ -0.65
CXCL1P09341 CAPN8-201ENST00000366872 2427 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
CXCL1P09341 DNAJC30-201ENST00000395176 2485 ntAPPRIS P1 BASIC10.97□□□□□ -0.65
CXCL1P09341 AC009108.4-201ENST00000623284 2451 ntBASIC10.97□□□□□ -0.65
CXCL1P09341 PID1-203ENST00000392055 2533 ntAPPRIS P1 TSL 2 BASIC10.97□□□□□ -0.65
CXCL1P09341 ANGEL2-208ENST00000535388 2517 ntTSL 1 (best) BASIC10.97□□□□□ -0.65
CXCL1P09341 VAV1-207ENST00000599806 2717 ntTSL 1 (best) BASIC10.97□□□□□ -0.65
CXCL1P09341 PES1-203ENST00000402281 2760 ntTSL 2 BASIC10.97□□□□□ -0.65
CXCL1P09341 SYBU-203ENST00000408889 2776 ntAPPRIS ALT2 TSL 5 BASIC10.97□□□□□ -0.65
CXCL1P09341 RALA-201ENST00000005257 2880 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
CXCL1P09341 CHST15-201ENST00000346248 4810 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
CXCL1P09341 CEMIP-203ENST00000394685 7357 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
CXCL1P09341 PRDM10-202ENST00000358825 6322 ntTSL 1 (best) BASIC10.97□□□□□ -0.65
CXCL1P09341 PRDM10-203ENST00000360871 6301 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
CXCL1P09341 LSM1-201ENST00000311351 1147 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
CXCL1P09341 TNNC2-201ENST00000372555 710 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
CXCL1P09341 CHCHD1-202ENST00000372837 1202 ntTSL 2 BASIC10.97□□□□□ -0.65
CXCL1P09341 PDGFB-202ENST00000381551 1125 ntTSL 5 BASIC10.97□□□□□ -0.65
CXCL1P09341 AC004865.2-202ENST00000444348 852 ntTSL 3 BASIC10.97□□□□□ -0.65
CXCL1P09341 LINC00899-202ENST00000444890 493 ntTSL 3 BASIC10.97□□□□□ -0.65
CXCL1P09341 AC026410.3-201ENST00000514280 936 ntBASIC10.97□□□□□ -0.65
CXCL1P09341 TPT1-AS1-219ENST00000523506 574 ntTSL 4 BASIC10.97□□□□□ -0.65
CXCL1P09341 AC069262.1-201ENST00000539058 672 ntBASIC10.97□□□□□ -0.65
CXCL1P09341 ATP6V0D1-203ENST00000540149 1262 ntTSL 2 BASIC10.97□□□□□ -0.65
CXCL1P09341 AP002770.1-201ENST00000540547 428 ntTSL 4 BASIC10.97□□□□□ -0.65
CXCL1P09341 KIRREL3-AS1-201ENST00000548204 586 ntTSL 3 BASIC10.97□□□□□ -0.65
CXCL1P09341 SHBG-212ENST00000575314 1146 ntTSL 1 (best) BASIC10.97□□□□□ -0.65
CXCL1P09341 KLK8-205ENST00000593490 267 ntTSL 3 BASIC10.97□□□□□ -0.65
CXCL1P09341 LINC02084-201ENST00000606069 1096 ntBASIC10.97□□□□□ -0.65
CXCL1P09341 AL391069.4-201ENST00000609583 481 ntBASIC10.97□□□□□ -0.65
CXCL1P09341 AC010503.4-201ENST00000615487 688 ntBASIC10.97□□□□□ -0.65
CXCL1P09341 CDK2AP1-207ENST00000618072 1144 ntTSL 3 BASIC10.97□□□□□ -0.65
Retrieved 100 of 98,524 protein–RNA pairs in 42.7 ms