Protein–RNA interactions for Protein: O43365

HOXA3, Homeobox protein Hox-A3, humanhuman

Predicted RBP Predictions only

Length 443 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA3O43365 MYO16-202ENST00000356711 6874 ntAPPRIS P3 TSL 1 (best) BASIC11.42□□□□□ -0.58
HOXA3O43365 JAKMIP3-201ENST00000298622 6626 ntAPPRIS P1 TSL 5 BASIC11.42□□□□□ -0.58
HOXA3O43365 APTX-211ENST00000463596 1345 ntAPPRIS ALT2 TSL 1 (best) BASIC11.42□□□□□ -0.58
HOXA3O43365 AC025171.1-202ENST00000499871 2271 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
HOXA3O43365 PRKCB-201ENST00000303531 7969 ntAPPRIS P4 TSL 1 (best) BASIC11.42□□□□□ -0.58
HOXA3O43365 TICRR-201ENST00000268138 6775 ntAPPRIS P3 TSL 5 BASIC11.42□□□□□ -0.58
HOXA3O43365 SLC35E2B-205ENST00000617444 6283 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
HOXA3O43365 KIRREL3-202ENST00000525704 2474 ntAPPRIS ALT2 TSL 1 (best) BASIC11.42□□□□□ -0.58
HOXA3O43365 SEMA4F-202ENST00000357877 4312 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
HOXA3O43365 APOA1-202ENST00000359492 932 ntAPPRIS P1 TSL 2 BASIC11.42□□□□□ -0.58
HOXA3O43365 AC006987.1-201ENST00000413610 527 ntBASIC11.42□□□□□ -0.58
HOXA3O43365 AC145207.1-201ENST00000415556 691 ntTSL 4 BASIC11.42□□□□□ -0.58
HOXA3O43365 AL592301.1-201ENST00000439501 864 ntTSL 3 BASIC11.42□□□□□ -0.58
HOXA3O43365 AC098934.1-203ENST00000442868 1262 ntBASIC11.42□□□□□ -0.58
HOXA3O43365 LYPLA2P1-203ENST00000447689 696 ntBASIC11.42□□□□□ -0.58
HOXA3O43365 AC084030.1-201ENST00000455068 561 ntTSL 4 BASIC11.42□□□□□ -0.58
HOXA3O43365 AL355803.1-201ENST00000455524 188 ntTSL 2 BASIC11.42□□□□□ -0.58
HOXA3O43365 DPY19L2P5-201ENST00000456300 331 ntBASIC11.42□□□□□ -0.58
HOXA3O43365 AC011247.2-201ENST00000457097 233 ntTSL 4 BASIC11.42□□□□□ -0.58
HOXA3O43365 TXNRD2-206ENST00000462330 1129 ntTSL 3 BASIC11.42□□□□□ -0.58
HOXA3O43365 AC022447.6-201ENST00000515522 438 ntBASIC11.42□□□□□ -0.58
HOXA3O43365 C12orf73-210ENST00000552940 685 ntTSL 2 BASIC11.42□□□□□ -0.58
HOXA3O43365 STRADA-221ENST00000582137 1238 ntTSL 2 BASIC11.42□□□□□ -0.58
HOXA3O43365 MIR2392-201ENST00000584881 84 ntBASIC11.42□□□□□ -0.58
HOXA3O43365 AC008758.6-201ENST00000598753 588 ntAPPRIS P1 TSL 4 BASIC11.42□□□□□ -0.58
HOXA3O43365 AL133467.4-201ENST00000602953 725 ntBASIC11.42□□□□□ -0.58
HOXA3O43365 ANXA8L1-206ENST00000619162 1109 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
HOXA3O43365 SNRPA1-216ENST00000626000 539 ntTSL 5 BASIC11.42□□□□□ -0.58
HOXA3O43365 ZNF586-203ENST00000396154 2163 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
HOXA3O43365 CILP2-202ENST00000586018 4234 ntAPPRIS ALT1 TSL 2 BASIC11.42□□□□□ -0.58
HOXA3O43365 STRA6-207ENST00000535552 2631 ntTSL 2 BASIC11.42□□□□□ -0.58
HOXA3O43365 ZNF576-202ENST00000391965 1468 ntAPPRIS P1 TSL 2 BASIC11.42□□□□□ -0.58
HOXA3O43365 VAMP2-202ENST00000404970 1479 ntTSL 2 BASIC11.42□□□□□ -0.58
HOXA3O43365 MKRN2-201ENST00000170447 2848 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
HOXA3O43365 SCAP-206ENST00000428413 3749 ntTSL 5 BASIC11.42□□□□□ -0.58
HOXA3O43365 CDK17-201ENST00000261211 4157 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
HOXA3O43365 LINC02212-201ENST00000515243 2130 ntTSL 2 BASIC11.42□□□□□ -0.58
HOXA3O43365 CCT8L1P-201ENST00000465400 1674 ntBASIC11.42□□□□□ -0.58
HOXA3O43365 PMM2-201ENST00000268261 2313 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
HOXA3O43365 RPGRIP1-210ENST00000556336 2955 ntTSL 5 BASIC11.42□□□□□ -0.58
HOXA3O43365 DHTKD1-201ENST00000263035 5159 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
HOXA3O43365 PFAS-201ENST00000314666 5371 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
HOXA3O43365 CEP295NL-201ENST00000322630 2090 ntTSL 2 BASIC11.42□□□□□ -0.58
HOXA3O43365 ZBTB17-202ENST00000375743 2745 ntAPPRIS P3 TSL 1 (best) BASIC11.42□□□□□ -0.58
HOXA3O43365 AC004223.3-201ENST00000593039 1638 ntAPPRIS P5 TSL 2 BASIC11.42□□□□□ -0.58
HOXA3O43365 ZNF395-201ENST00000344423 4808 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
HOXA3O43365 DNAH14-204ENST00000366849 2215 ntTSL 1 (best) BASIC11.41□□□□□ -0.58
HOXA3O43365 FAM168A-204ENST00000450446 1364 ntTSL 1 (best) BASIC11.41□□□□□ -0.58
HOXA3O43365 PPP2R5C-204ENST00000422945 4481 ntTSL 2 BASIC11.41□□□□□ -0.58
HOXA3O43365 PACSIN2-201ENST00000263246 3249 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
HOXA3O43365 CYP4B1-201ENST00000271153 2171 ntAPPRIS P3 TSL 1 (best) BASIC11.41□□□□□ -0.58
HOXA3O43365 PRKRIP1-201ENST00000397912 2159 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
HOXA3O43365 KDM5C-208ENST00000452825 6096 ntAPPRIS ALT2 TSL 5 BASIC11.41□□□□□ -0.58
HOXA3O43365 RBPMS-201ENST00000287771 2974 ntTSL 1 (best) BASIC11.41□□□□□ -0.58
HOXA3O43365 HPGD-209ENST00000510901 1535 ntTSL 2 BASIC11.41□□□□□ -0.58
HOXA3O43365 TRIP10-208ENST00000596758 1920 ntTSL 1 (best) BASIC11.41□□□□□ -0.58
HOXA3O43365 HNRNPUL1-205ENST00000593587 2725 ntTSL 2 BASIC11.41□□□□□ -0.58
HOXA3O43365 PXYLP1-201ENST00000286353 3281 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
HOXA3O43365 PODN-207ENST00000618387 3065 ntAPPRIS ALT2 TSL 2 BASIC11.41□□□□□ -0.58
HOXA3O43365 PIDD1-202ENST00000411829 2886 ntTSL 1 (best) BASIC11.41□□□□□ -0.58
HOXA3O43365 TIGD4-201ENST00000304337 2472 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
HOXA3O43365 TACR2-201ENST00000373306 2083 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
HOXA3O43365 IL9RP3-201ENST00000442856 1674 ntBASIC11.41□□□□□ -0.58
HOXA3O43365 ATE1-202ENST00000369040 4803 ntTSL 2 BASIC11.41□□□□□ -0.58
HOXA3O43365 C8G-201ENST00000224181 855 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
HOXA3O43365 PYY2-201ENST00000315776 282 ntBASIC11.41□□□□□ -0.58
HOXA3O43365 C7orf61-201ENST00000332375 1004 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
HOXA3O43365 CNR1-201ENST00000362094 1252 ntTSL 1 (best) BASIC11.41□□□□□ -0.58
HOXA3O43365 SPIN2B-203ENST00000374910 725 ntTSL 3 BASIC11.41□□□□□ -0.58
HOXA3O43365 IGHV4-39-201ENST00000390619 425 ntAPPRIS P1 BASIC11.41□□□□□ -0.58
HOXA3O43365 PTTG1IP-202ENST00000397886 755 ntTSL 4 BASIC11.41□□□□□ -0.58
HOXA3O43365 RPL13AP19-201ENST00000434320 584 ntBASIC11.41□□□□□ -0.58
HOXA3O43365 MFAP3-202ENST00000439768 1186 ntTSL 2 BASIC11.41□□□□□ -0.58
HOXA3O43365 AL008733.1-201ENST00000440516 469 ntTSL 3 BASIC11.41□□□□□ -0.58
HOXA3O43365 AL121845.1-201ENST00000447343 464 ntTSL 2 BASIC11.41□□□□□ -0.58
HOXA3O43365 AL355376.1-201ENST00000456082 517 ntTSL 3 BASIC11.41□□□□□ -0.58
HOXA3O43365 VDAC3-211ENST00000522572 799 ntTSL 5 BASIC11.41□□□□□ -0.58
HOXA3O43365 AC009163.3-201ENST00000563554 852 ntTSL 3 BASIC11.41□□□□□ -0.58
HOXA3O43365 AC011500.3-201ENST00000594676 647 ntTSL 4 BASIC11.41□□□□□ -0.58
HOXA3O43365 AC011462.2-201ENST00000598887 344 ntTSL 5 BASIC11.41□□□□□ -0.58
HOXA3O43365 AL021707.6-201ENST00000609212 491 ntBASIC11.41□□□□□ -0.58
HOXA3O43365 CR589904.1-202ENST00000611154 660 ntTSL 5 BASIC11.41□□□□□ -0.58
HOXA3O43365 HIST1H3F-201ENST00000618052 411 ntAPPRIS P1 BASIC11.41□□□□□ -0.58
HOXA3O43365 AC009145.4-201ENST00000625119 1294 ntBASIC11.41□□□□□ -0.58
HOXA3O43365 LONP1-202ENST00000540670 3002 ntTSL 2 BASIC11.41□□□□□ -0.58
HOXA3O43365 AC009133.1-201ENST00000569981 2449 ntTSL 2 BASIC11.41□□□□□ -0.58
HOXA3O43365 SMARCA4-204ENST00000444061 4938 ntAPPRIS ALT1 TSL 5 BASIC11.41□□□□□ -0.58
HOXA3O43365 TBPL2-201ENST00000247219 2037 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
HOXA3O43365 TBCE-202ENST00000406207 2012 ntAPPRIS P3 TSL 5 BASIC11.41□□□□□ -0.58
HOXA3O43365 PPM1L-201ENST00000295839 1449 ntTSL 1 (best) BASIC11.41□□□□□ -0.58
HOXA3O43365 SPTBN2-204ENST00000529997 8085 ntTSL 5 BASIC11.41□□□□□ -0.58
HOXA3O43365 LINC01815-202ENST00000641468 1409 ntBASIC11.41□□□□□ -0.58
HOXA3O43365 AC107918.4-201ENST00000641966 3141 ntBASIC11.41□□□□□ -0.58
HOXA3O43365 MARS-201ENST00000262027 2905 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
HOXA3O43365 HSD17B4-206ENST00000504811 2740 ntTSL 2 BASIC11.41□□□□□ -0.58
HOXA3O43365 GABRB2-205ENST00000517901 1779 ntTSL 5 BASIC11.41□□□□□ -0.58
HOXA3O43365 CLN8-204ENST00000519254 1769 ntAPPRIS P1 TSL 5 BASIC11.41□□□□□ -0.58
HOXA3O43365 TTC39A-216ENST00000530004 1780 ntTSL 1 (best) BASIC11.41□□□□□ -0.58
HOXA3O43365 LRCH3-206ENST00000438796 7394 ntAPPRIS P5 TSL 2 BASIC11.41□□□□□ -0.58
HOXA3O43365 EDNRB-204ENST00000626030 1571 ntTSL 1 (best) BASIC11.41□□□□□ -0.58
Retrieved 100 of 98,524 protein–RNA pairs in 37 ms