Protein–RNA interactions for Protein: Q9NQT5

EXOSC3, Exosome complex component RRP40, humanhuman

Known RBP Predictions only

Length 275 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EXOSC3Q9NQT5 ERF-201ENST00000222329 2698 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
EXOSC3Q9NQT5 NKX6-3-202ENST00000524115 1683 ntTSL 2 BASIC20.58■□□□□ 0.88
EXOSC3Q9NQT5 POLDIP2-201ENST00000540200 2121 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
EXOSC3Q9NQT5 CCR10-203ENST00000591765 1942 ntTSL 3 BASIC20.57■□□□□ 0.88
EXOSC3Q9NQT5 PNMT-201ENST00000269582 1253 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
EXOSC3Q9NQT5 FOXP1-201ENST00000318779 843 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
EXOSC3Q9NQT5 DENND1B-204ENST00000367396 2177 ntAPPRIS P3 TSL 1 (best) BASIC20.57■□□□□ 0.88
EXOSC3Q9NQT5 NAXE-202ENST00000368234 901 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
EXOSC3Q9NQT5 CD72-202ENST00000378430 585 ntTSL 3 BASIC20.57■□□□□ 0.88
EXOSC3Q9NQT5 TSPY9P-201ENST00000440215 945 ntBASIC20.57■□□□□ 0.88
EXOSC3Q9NQT5 TSPY11P-201ENST00000442607 1045 ntBASIC20.57■□□□□ 0.88
EXOSC3Q9NQT5 CREM-229ENST00000474362 1030 ntTSL 2 BASIC20.57■□□□□ 0.88
EXOSC3Q9NQT5 AC112229.4-201ENST00000488671 1528 ntTSL 2 BASIC20.57■□□□□ 0.88
EXOSC3Q9NQT5 PCDH1-204ENST00000503492 2373 ntTSL 5 BASIC20.57■□□□□ 0.88
EXOSC3Q9NQT5 LSR-204ENST00000361790 2210 ntAPPRIS P4 TSL 1 (best) BASIC20.57■□□□□ 0.88
EXOSC3Q9NQT5 NKIRAS2-206ENST00000393885 1909 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
EXOSC3Q9NQT5 HAR1A-201ENST00000433161 1882 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
EXOSC3Q9NQT5 AMZ2-202ENST00000359904 2402 ntAPPRIS P1 TSL 2 BASIC20.56■□□□□ 0.88
EXOSC3Q9NQT5 LINC01116-201ENST00000295549 1407 ntTSL 2 BASIC20.56■□□□□ 0.88
EXOSC3Q9NQT5 AC079630.1-202ENST00000618127 1840 ntBASIC20.56■□□□□ 0.88
EXOSC3Q9NQT5 IGFBP3-202ENST00000381083 1050 ntAPPRIS ALT1 TSL 5 BASIC20.56■□□□□ 0.88
EXOSC3Q9NQT5 TFPT-201ENST00000391757 774 ntTSL 5 BASIC20.56■□□□□ 0.88
EXOSC3Q9NQT5 TFPT-202ENST00000391758 804 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
EXOSC3Q9NQT5 CACTIN-AS1-201ENST00000592274 1913 ntTSL 2 BASIC20.56■□□□□ 0.88
EXOSC3Q9NQT5 NAB1-202ENST00000409581 2360 ntAPPRIS P3 TSL 2 BASIC20.56■□□□□ 0.88
EXOSC3Q9NQT5 POU2F3-206ENST00000543440 1953 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
EXOSC3Q9NQT5 PEX5-205ENST00000420616 2477 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
EXOSC3Q9NQT5 AL591684.2-201ENST00000605970 1594 ntTSL 5 BASIC20.55■□□□□ 0.88
EXOSC3Q9NQT5 GAS2L1-201ENST00000406549 1803 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
EXOSC3Q9NQT5 DLL3-201ENST00000205143 2332 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
EXOSC3Q9NQT5 CPNE2-202ENST00000535318 2316 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
EXOSC3Q9NQT5 PITX1-201ENST00000265340 2406 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
EXOSC3Q9NQT5 PDIA2-201ENST00000219406 1698 ntAPPRIS P2 TSL 1 (best) BASIC20.55■□□□□ 0.88
EXOSC3Q9NQT5 DOHH-201ENST00000427575 2031 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
EXOSC3Q9NQT5 CAPN12-212ENST00000601953 2381 ntTSL 5 BASIC20.55■□□□□ 0.88
EXOSC3Q9NQT5 TST-201ENST00000249042 1211 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
EXOSC3Q9NQT5 TMEM54-201ENST00000329151 871 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
EXOSC3Q9NQT5 TMEM151B-201ENST00000438774 1140 ntAPPRIS ALT2 TSL 3 BASIC20.55■□□□□ 0.88
EXOSC3Q9NQT5 AP001267.3-203ENST00000554407 579 ntTSL 2 BASIC20.55■□□□□ 0.88
EXOSC3Q9NQT5 ZEB1-AS1-205ENST00000605946 382 ntTSL 5 BASIC20.55■□□□□ 0.88
EXOSC3Q9NQT5 ODF3L2-201ENST00000315489 1604 ntAPPRIS P2 TSL 1 (best) BASIC20.55■□□□□ 0.88
EXOSC3Q9NQT5 HOMER3-204ENST00000539827 1979 ntAPPRIS P3 TSL 1 (best) BASIC20.55■□□□□ 0.88
EXOSC3Q9NQT5 PLPP2-202ENST00000327790 1397 ntTSL 5 BASIC20.55■□□□□ 0.88
EXOSC3Q9NQT5 CDC16-206ENST00000375310 2156 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
EXOSC3Q9NQT5 SRI-201ENST00000265729 2010 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
EXOSC3Q9NQT5 CDC20-202ENST00000372462 1777 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
EXOSC3Q9NQT5 SESN3-202ENST00000416495 1408 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
EXOSC3Q9NQT5 EID2B-201ENST00000326282 1865 ntAPPRIS P1 BASIC20.54■□□□□ 0.88
EXOSC3Q9NQT5 KLC1-205ENST00000380038 2322 ntTSL 2 BASIC20.54■□□□□ 0.88
EXOSC3Q9NQT5 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC20.54■□□□□ 0.88
EXOSC3Q9NQT5 HOXD1-201ENST00000331462 1975 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
EXOSC3Q9NQT5 DACT3-201ENST00000300875 2526 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
EXOSC3Q9NQT5 PANK2-201ENST00000316562 2280 ntAPPRIS P2 TSL 1 (best) BASIC20.54■□□□□ 0.88
EXOSC3Q9NQT5 UNC93B8-201ENST00000511903 705 ntBASIC20.54■□□□□ 0.88
EXOSC3Q9NQT5 CHTF8-205ENST00000519520 856 ntTSL 2 BASIC20.54■□□□□ 0.88
EXOSC3Q9NQT5 PLPP1-202ENST00000307259 1597 ntAPPRIS ALT1 TSL 1 (best) BASIC20.54■□□□□ 0.88
EXOSC3Q9NQT5 ACTR1B-201ENST00000289228 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
EXOSC3Q9NQT5 SLC35C1-202ENST00000442528 1756 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
EXOSC3Q9NQT5 IMPDH1-210ENST00000480861 1765 ntAPPRIS P2 TSL 2 BASIC20.54■□□□□ 0.88
EXOSC3Q9NQT5 P2RX4-211ENST00000543171 1777 ntTSL 5 BASIC20.54■□□□□ 0.88
EXOSC3Q9NQT5 PRSS29P-202ENST00000568091 1864 ntTSL 5 BASIC20.54■□□□□ 0.88
EXOSC3Q9NQT5 RABEP2-201ENST00000357573 2175 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
EXOSC3Q9NQT5 FAM43A-201ENST00000329759 2494 ntAPPRIS P1 BASIC20.53■□□□□ 0.88
EXOSC3Q9NQT5 AEBP2-204ENST00000398864 5099 ntAPPRIS P4 TSL 1 (best) BASIC20.53■□□□□ 0.88
EXOSC3Q9NQT5 FAM136A-201ENST00000037869 1810 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
EXOSC3Q9NQT5 LSM4-201ENST00000252816 986 ntTSL 2 BASIC20.53■□□□□ 0.88
EXOSC3Q9NQT5 MT1E-201ENST00000306061 704 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
EXOSC3Q9NQT5 TRIR-205ENST00000592273 783 ntTSL 3 BASIC20.53■□□□□ 0.88
EXOSC3Q9NQT5 CCDC157-202ENST00000399824 1759 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
EXOSC3Q9NQT5 SNUPN-207ENST00000567134 1641 ntAPPRIS P1 TSL 5 BASIC20.53■□□□□ 0.88
EXOSC3Q9NQT5 DTNB-211ENST00000407661 2420 ntAPPRIS ALT1 TSL 1 (best) BASIC20.52■□□□□ 0.88
EXOSC3Q9NQT5 AL137002.2-201ENST00000639766 2238 ntTSL 5 BASIC20.52■□□□□ 0.88
EXOSC3Q9NQT5 KISS1-201ENST00000367194 709 ntAPPRIS P2 TSL 1 (best) BASIC20.52■□□□□ 0.88
EXOSC3Q9NQT5 AC073111.5-204ENST00000498682 1167 ntAPPRIS P1 TSL 2 BASIC20.52■□□□□ 0.88
EXOSC3Q9NQT5 AL117209.1-201ENST00000560931 828 ntTSL 3 BASIC20.52■□□□□ 0.88
EXOSC3Q9NQT5 MIR6724-1-201ENST00000616420 92 ntBASIC20.52■□□□□ 0.88
EXOSC3Q9NQT5 MIR6724-2-201ENST00000616483 92 ntBASIC20.52■□□□□ 0.88
EXOSC3Q9NQT5 MIR6724-4-201ENST00000617390 92 ntBASIC20.52■□□□□ 0.88
EXOSC3Q9NQT5 MIR6724-3-201ENST00000622482 92 ntBASIC20.52■□□□□ 0.88
EXOSC3Q9NQT5 MMP21-201ENST00000368808 1919 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
EXOSC3Q9NQT5 DTNB-201ENST00000288642 2464 ntAPPRIS ALT2 TSL 2 BASIC20.52■□□□□ 0.88
EXOSC3Q9NQT5 DTNB-208ENST00000406818 2474 ntAPPRIS P4 TSL 1 (best) BASIC20.52■□□□□ 0.88
EXOSC3Q9NQT5 PPP2R2D-201ENST00000455566 5738 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
EXOSC3Q9NQT5 TCF3-203ENST00000395423 2779 ntTSL 5 BASIC20.51■□□□□ 0.87
EXOSC3Q9NQT5 FRS3-202ENST00000373018 2174 ntAPPRIS P1 TSL 3 BASIC20.51■□□□□ 0.87
EXOSC3Q9NQT5 CAMK2N2-201ENST00000296238 1362 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
EXOSC3Q9NQT5 BX088645.1-201ENST00000636699 1728 ntAPPRIS P1 TSL 5 BASIC20.51■□□□□ 0.87
EXOSC3Q9NQT5 GUSBP5-201ENST00000418136 578 ntBASIC20.51■□□□□ 0.87
EXOSC3Q9NQT5 TIE1-210ENST00000538015 1140 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
EXOSC3Q9NQT5 AC144652.1-201ENST00000609974 1624 ntBASIC20.51■□□□□ 0.87
EXOSC3Q9NQT5 GRAMD1A-201ENST00000317991 2695 ntAPPRIS P3 TSL 1 (best) BASIC20.51■□□□□ 0.87
EXOSC3Q9NQT5 BTBD7-205ENST00000554565 2697 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
EXOSC3Q9NQT5 LRRC73-201ENST00000372441 2121 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
EXOSC3Q9NQT5 RANBP10-206ENST00000602677 2374 ntTSL 5 BASIC20.51■□□□□ 0.87
EXOSC3Q9NQT5 SYNDIG1-201ENST00000376862 2522 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
EXOSC3Q9NQT5 PEX10-204ENST00000507596 1941 ntAPPRIS ALT1 TSL 5 BASIC20.51■□□□□ 0.87
EXOSC3Q9NQT5 AC012676.1-201ENST00000574705 1949 ntBASIC20.51■□□□□ 0.87
EXOSC3Q9NQT5 RAX-201ENST00000256852 2935 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
EXOSC3Q9NQT5 MYBL1-201ENST00000517885 1714 ntTSL 5 BASIC20.5■□□□□ 0.87
EXOSC3Q9NQT5 XBP1-201ENST00000216037 1850 ntAPPRIS P2 TSL 1 (best) BASIC20.5■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 58.5 ms