Protein–RNA interactions for Protein: Q96P44

COL21A1, Collagen alpha-1(XXI) chain, humanhuman

Predictions only

Length 957 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL21A1Q96P44 NAA30-203ENST00000555166 1294 ntAPPRIS ALT2 TSL 2 BASIC21.17■□□□□ 0.98
COL21A1Q96P44 FAM173A-207ENST00000569529 1052 ntAPPRIS P3 TSL 1 (best) BASIC21.17■□□□□ 0.98
COL21A1Q96P44 ZEB1-AS1-205ENST00000605946 382 ntTSL 5 BASIC21.17■□□□□ 0.98
COL21A1Q96P44 SNX5-217ENST00000606557 1087 ntBASIC21.17■□□□□ 0.98
COL21A1Q96P44 COMMD5-201ENST00000305103 1373 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
COL21A1Q96P44 AUH-201ENST00000303617 1490 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
COL21A1Q96P44 CDX1-201ENST00000231656 1758 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
COL21A1Q96P44 ACTL10-201ENST00000330271 2028 ntAPPRIS P1 BASIC21.17■□□□□ 0.98
COL21A1Q96P44 RYK-208ENST00000620660 2942 ntAPPRIS P3 TSL 1 (best) BASIC21.16■□□□□ 0.98
COL21A1Q96P44 KCTD8-201ENST00000360029 2587 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
COL21A1Q96P44 CDIPT-201ENST00000219789 2353 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
COL21A1Q96P44 POLR2J2-202ENST00000358438 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
COL21A1Q96P44 POLR2J3-220ENST00000613744 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
COL21A1Q96P44 C19orf12-204ENST00000392276 1912 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
COL21A1Q96P44 MEIOB-202ENST00000397344 1792 ntTSL 5 BASIC21.16■□□□□ 0.98
COL21A1Q96P44 IFNGR2-202ENST00000381995 1742 ntAPPRIS ALT2 TSL 5 BASIC21.16■□□□□ 0.98
COL21A1Q96P44 C21orf2-203ENST00000397956 1634 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
COL21A1Q96P44 NPW-201ENST00000329610 498 ntAPPRIS P2 TSL 1 (best) BASIC21.16■□□□□ 0.98
COL21A1Q96P44 FEZ1-202ENST00000366139 1053 ntTSL 2 BASIC21.16■□□□□ 0.98
COL21A1Q96P44 NAXE-202ENST00000368234 901 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
COL21A1Q96P44 IGFBP7-203ENST00000514062 1251 ntAPPRIS ALT2 TSL 2 BASIC21.16■□□□□ 0.98
COL21A1Q96P44 DUSP22-214ENST00000605315 867 ntTSL 5 BASIC21.16■□□□□ 0.98
COL21A1Q96P44 AC119427.1-201ENST00000633182 556 ntTSL 4 BASIC21.16■□□□□ 0.98
COL21A1Q96P44 AC005551.1-201ENST00000641816 493 ntAPPRIS P1 BASIC21.16■□□□□ 0.98
COL21A1Q96P44 PHACTR2-208ENST00000440869 2569 ntAPPRIS ALT2 TSL 2 BASIC21.16■□□□□ 0.98
COL21A1Q96P44 KIF2A-202ENST00000401507 2539 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
COL21A1Q96P44 SLC2A8-203ENST00000373371 2172 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
COL21A1Q96P44 CRLF1-201ENST00000392386 1792 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
COL21A1Q96P44 ZKSCAN7-206ENST00000431636 1692 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
COL21A1Q96P44 NRL-202ENST00000396997 1517 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
COL21A1Q96P44 RBM42-206ENST00000592202 1469 ntTSL 5 BASIC21.15■□□□□ 0.98
COL21A1Q96P44 KLC1-227ENST00000634686 2229 ntTSL 5 BASIC21.15■□□□□ 0.98
COL21A1Q96P44 ADAMTS13-203ENST00000371910 1074 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
COL21A1Q96P44 MDK-202ENST00000395565 951 ntAPPRIS P2 TSL 2 BASIC21.15■□□□□ 0.98
COL21A1Q96P44 GUSBP5-201ENST00000418136 578 ntBASIC21.15■□□□□ 0.98
COL21A1Q96P44 CLTA-204ENST00000433436 1235 ntAPPRIS ALT1 TSL 1 (best) BASIC21.15■□□□□ 0.98
COL21A1Q96P44 CREM-229ENST00000474362 1030 ntTSL 2 BASIC21.15■□□□□ 0.98
COL21A1Q96P44 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC21.15■□□□□ 0.98
COL21A1Q96P44 CLTA-210ENST00000540080 989 ntTSL 2 BASIC21.15■□□□□ 0.98
COL21A1Q96P44 PPP1R12C-201ENST00000263433 2924 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
COL21A1Q96P44 PEX10-204ENST00000507596 1941 ntAPPRIS ALT1 TSL 5 BASIC21.15■□□□□ 0.98
COL21A1Q96P44 ACOT1-201ENST00000311148 1713 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
COL21A1Q96P44 DENND1A-201ENST00000373618 3003 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
COL21A1Q96P44 SPAG7-205ENST00000573366 1668 ntTSL 3 BASIC21.15■□□□□ 0.98
COL21A1Q96P44 C19orf68-201ENST00000328759 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
COL21A1Q96P44 DONSON-204ENST00000432378 1618 ntTSL 5 BASIC21.15■□□□□ 0.98
COL21A1Q96P44 NKX2-1-201ENST00000354822 2191 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
COL21A1Q96P44 RPP38-201ENST00000378197 1457 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
COL21A1Q96P44 MYBL2-201ENST00000217026 2639 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
COL21A1Q96P44 SOS2-201ENST00000216373 5498 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
COL21A1Q96P44 MRPL38-201ENST00000309352 1888 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
COL21A1Q96P44 TST-201ENST00000249042 1211 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
COL21A1Q96P44 TSPY9P-201ENST00000440215 945 ntBASIC21.14■□□□□ 0.97
COL21A1Q96P44 TSPY11P-201ENST00000442607 1045 ntBASIC21.14■□□□□ 0.97
COL21A1Q96P44 HNRNPUL1-222ENST00000617774 451 ntTSL 5 BASIC21.14■□□□□ 0.97
COL21A1Q96P44 AC098864.1-205ENST00000315302 2260 ntTSL 2 BASIC21.14■□□□□ 0.97
COL21A1Q96P44 POLDIP2-201ENST00000540200 2121 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
COL21A1Q96P44 AL117328.2-201ENST00000624617 1940 ntBASIC21.14■□□□□ 0.97
COL21A1Q96P44 BARHL1-201ENST00000263610 2341 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
COL21A1Q96P44 HES6-201ENST00000272937 1454 ntAPPRIS P3 TSL 1 (best) BASIC21.13■□□□□ 0.97
COL21A1Q96P44 CCDC92-209ENST00000545891 1790 ntAPPRIS P1 TSL 2 BASIC21.13■□□□□ 0.97
COL21A1Q96P44 TSSK1B-201ENST00000390666 2478 ntAPPRIS P1 BASIC21.13■□□□□ 0.97
COL21A1Q96P44 SLC25A42-201ENST00000318596 3120 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
COL21A1Q96P44 ANAPC13-201ENST00000354910 1209 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
COL21A1Q96P44 AC055876.1-201ENST00000430589 895 ntTSL 2 BASIC21.13■□□□□ 0.97
COL21A1Q96P44 TMEM170A-206ENST00000569276 609 ntTSL 2 BASIC21.13■□□□□ 0.97
COL21A1Q96P44 MMP28-203ENST00000612672 1092 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
COL21A1Q96P44 SLC25A29-202ENST00000392908 2242 ntTSL 2 BASIC21.13■□□□□ 0.97
COL21A1Q96P44 DCAF4-206ENST00000509153 1521 ntAPPRIS ALT2 TSL 2 BASIC21.13■□□□□ 0.97
COL21A1Q96P44 TNFRSF10B-202ENST00000347739 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
COL21A1Q96P44 ALDH1A3-203ENST00000557963 1670 ntBASIC21.12■□□□□ 0.97
COL21A1Q96P44 SPANXA2-OT1-201ENST00000622372 1686 ntTSL 2 BASIC21.12■□□□□ 0.97
COL21A1Q96P44 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC21.12■□□□□ 0.97
COL21A1Q96P44 MT1E-201ENST00000306061 704 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
COL21A1Q96P44 WBP1-203ENST00000409737 1110 ntAPPRIS ALT1 TSL 5 BASIC21.12■□□□□ 0.97
COL21A1Q96P44 GDF6-202ENST00000620978 973 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
COL21A1Q96P44 NEURL4-201ENST00000315614 5182 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
COL21A1Q96P44 CCDC9-201ENST00000221922 2093 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
COL21A1Q96P44 ARHGAP27-207ENST00000528273 2319 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
COL21A1Q96P44 LRRC61-205ENST00000493307 1456 ntAPPRIS P1 TSL 5 BASIC21.12■□□□□ 0.97
COL21A1Q96P44 AC092068.2-201ENST00000590491 1708 ntBASIC21.12■□□□□ 0.97
COL21A1Q96P44 ZNF213-208ENST00000576416 2240 ntAPPRIS P1 TSL 2 BASIC21.12■□□□□ 0.97
COL21A1Q96P44 EI24-204ENST00000527235 1625 ntTSL 5 BASIC21.11■□□□□ 0.97
COL21A1Q96P44 FGF22-201ENST00000215530 1311 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
COL21A1Q96P44 EVX1-201ENST00000222761 1500 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
COL21A1Q96P44 HACD1-202ENST00000361271 2237 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
COL21A1Q96P44 RAB32-201ENST00000367495 1217 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
COL21A1Q96P44 SUSD3-202ENST00000375472 1195 ntAPPRIS P3 TSL 1 (best) BASIC21.11■□□□□ 0.97
COL21A1Q96P44 ZNF302-211ENST00000509528 577 ntTSL 4 BASIC21.11■□□□□ 0.97
COL21A1Q96P44 C12orf75-207ENST00000552457 689 ntTSL 5 BASIC21.11■□□□□ 0.97
COL21A1Q96P44 MTDHP2-201ENST00000601468 714 ntBASIC21.11■□□□□ 0.97
COL21A1Q96P44 MADCAM1-206ENST00000617201 1491 ntAPPRIS ALT2 TSL 5 BASIC21.11■□□□□ 0.97
COL21A1Q96P44 MADCAM1-207ENST00000619333 1485 ntAPPRIS ALT2 TSL 5 BASIC21.11■□□□□ 0.97
COL21A1Q96P44 MADCAM1-210ENST00000622462 1461 ntAPPRIS ALT2 TSL 5 BASIC21.11■□□□□ 0.97
COL21A1Q96P44 UBE2S-201ENST00000264552 2548 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
COL21A1Q96P44 NRG2-201ENST00000289409 2535 ntAPPRIS ALT2 TSL 5 BASIC21.11■□□□□ 0.97
COL21A1Q96P44 IGF2-AS-201ENST00000381361 2063 ntTSL 2 BASIC21.11■□□□□ 0.97
COL21A1Q96P44 MAPKAPK5-AS1-201ENST00000428207 2290 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
COL21A1Q96P44 IRF3-227ENST00000600911 1637 ntTSL 5 BASIC21.11■□□□□ 0.97
COL21A1Q96P44 ACAA1-219ENST00000625927 1760 ntTSL 5 BASIC21.1■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 14.4 ms