Protein–RNA interactions for Protein: Q96N23

CFAP54, Cilia- and flagella-associated protein 54, humanhuman

Predictions only

Length 3,096 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CFAP54Q96N23 GALNS-213ENST00000569433 723 ntTSL 3 BASIC22.34■■□□□ 1.17
CFAP54Q96N23 AC004528.2-201ENST00000610701 440 ntTSL 5 BASIC22.34■■□□□ 1.17
CFAP54Q96N23 P2RX4-203ENST00000359949 1836 ntTSL 5 BASIC22.34■■□□□ 1.17
CFAP54Q96N23 ANKRD63-201ENST00000434396 1143 ntAPPRIS P1 BASIC22.34■■□□□ 1.17
CFAP54Q96N23 AC012414.4-201ENST00000560839 1074 ntTSL 5 BASIC22.34■■□□□ 1.17
CFAP54Q96N23 ELANE-202ENST00000590230 1028 ntAPPRIS P1 TSL 5 BASIC22.34■■□□□ 1.17
CFAP54Q96N23 AC060814.5-201ENST00000630916 1074 ntTSL 2 BASIC22.34■■□□□ 1.17
CFAP54Q96N23 MAPK8IP1P2-201ENST00000580257 1472 ntBASIC22.34■■□□□ 1.17
CFAP54Q96N23 CAVIN3-203ENST00000530979 957 ntTSL 2 BASIC22.34■■□□□ 1.17
CFAP54Q96N23 AC034102.6-201ENST00000550947 559 ntTSL 4 BASIC22.34■■□□□ 1.17
CFAP54Q96N23 BSCL2-205ENST00000403550 1693 ntAPPRIS P3 TSL 5 BASIC22.33■■□□□ 1.17
CFAP54Q96N23 SENP3-201ENST00000321337 2611 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
CFAP54Q96N23 NINJ1-201ENST00000375446 1281 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
CFAP54Q96N23 AP2S1-203ENST00000593442 636 ntTSL 2 BASIC22.33■■□□□ 1.17
CFAP54Q96N23 BTBD6-205ENST00000536364 1973 ntAPPRIS P2 TSL 5 BASIC22.33■■□□□ 1.17
CFAP54Q96N23 HOMER3-205ENST00000542541 1607 ntAPPRIS P3 TSL 1 (best) BASIC22.33■■□□□ 1.17
CFAP54Q96N23 ACYP2-201ENST00000303536 789 ntTSL 2 BASIC22.33■■□□□ 1.16
CFAP54Q96N23 MIR1224-201ENST00000408193 85 ntBASIC22.33■■□□□ 1.16
CFAP54Q96N23 FNDC5-207ENST00000640867 639 ntAPPRIS P2 TSL 2 BASIC22.33■■□□□ 1.16
CFAP54Q96N23 DACT2-202ENST00000366796 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC22.33■■□□□ 1.16
CFAP54Q96N23 SYNGR3-202ENST00000562045 1743 ntTSL 2 BASIC22.33■■□□□ 1.16
CFAP54Q96N23 HCFC1R1-201ENST00000248089 965 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
CFAP54Q96N23 HCFC1R1-207ENST00000574980 845 ntTSL 5 BASIC22.32■■□□□ 1.16
CFAP54Q96N23 EXOG-203ENST00000422077 1317 ntTSL 2 BASIC22.32■■□□□ 1.16
CFAP54Q96N23 ADD3-AS1-204ENST00000627565 388 ntTSL 3 BASIC22.32■■□□□ 1.16
CFAP54Q96N23 PRDX1-201ENST00000262746 1234 ntAPPRIS P1 TSL 5 BASIC22.32■■□□□ 1.16
CFAP54Q96N23 ZNF717-203ENST00000477374 1169 ntTSL 2 BASIC22.32■■□□□ 1.16
CFAP54Q96N23 AC098934.4-201ENST00000564127 592 ntBASIC22.32■■□□□ 1.16
CFAP54Q96N23 HERC2P5-204ENST00000569697 1214 ntTSL 2 BASIC22.32■■□□□ 1.16
CFAP54Q96N23 TMEM147-203ENST00000392205 767 ntTSL 2 BASIC22.31■■□□□ 1.16
CFAP54Q96N23 IGHV3-19-201ENST00000521488 291 ntBASIC22.31■■□□□ 1.16
CFAP54Q96N23 SLC7A5P2-201ENST00000553010 536 ntBASIC22.31■■□□□ 1.16
CFAP54Q96N23 NKX6-3-201ENST00000518699 1352 ntAPPRIS P1 TSL 5 BASIC22.31■■□□□ 1.16
CFAP54Q96N23 RTN2-202ENST00000344680 2063 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
CFAP54Q96N23 AC096887.2-201ENST00000623443 1957 ntBASIC22.31■■□□□ 1.16
CFAP54Q96N23 FEZF2-202ENST00000475839 1918 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
CFAP54Q96N23 MOSPD3-202ENST00000379527 1016 ntAPPRIS P1 TSL 5 BASIC22.31■■□□□ 1.16
CFAP54Q96N23 PRKCQ-AS1-202ENST00000445427 1133 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
CFAP54Q96N23 ASMT-202ENST00000381233 989 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
CFAP54Q96N23 CASP6-205ENST00000505486 538 ntTSL 4 BASIC22.3■■□□□ 1.16
CFAP54Q96N23 MAX-217ENST00000557277 728 ntTSL 3 BASIC22.3■■□□□ 1.16
CFAP54Q96N23 AC027307.1-201ENST00000590252 457 ntTSL 5 BASIC22.3■■□□□ 1.16
CFAP54Q96N23 C2CD4D-201ENST00000454109 1757 ntAPPRIS P1 TSL 2 BASIC22.3■■□□□ 1.16
CFAP54Q96N23 EVA1C-203ENST00000401402 1558 ntTSL 5 BASIC22.3■■□□□ 1.16
CFAP54Q96N23 CNPY3-202ENST00000394142 954 ntTSL 5 BASIC22.3■■□□□ 1.16
CFAP54Q96N23 ZNF821-201ENST00000313565 1874 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
CFAP54Q96N23 R3HCC1-201ENST00000265806 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC22.3■■□□□ 1.16
CFAP54Q96N23 LINC02228-203ENST00000641970 1355 ntBASIC22.3■■□□□ 1.16
CFAP54Q96N23 ANP32AP1-202ENST00000560832 1074 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
CFAP54Q96N23 PAQR4-205ENST00000576565 842 ntTSL 2 BASIC22.29■■□□□ 1.16
CFAP54Q96N23 ITM2C-210ENST00000620962 501 ntBASIC22.29■■□□□ 1.16
CFAP54Q96N23 TBXA2R-202ENST00000411851 1494 ntTSL 2 BASIC22.29■■□□□ 1.16
CFAP54Q96N23 AHSA2-201ENST00000357022 2437 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
CFAP54Q96N23 HDGFL1-201ENST00000510882 2174 ntAPPRIS P1 BASIC22.29■■□□□ 1.16
CFAP54Q96N23 RCCD1-203ENST00000555155 1871 ntAPPRIS ALT1 TSL 5 BASIC22.29■■□□□ 1.16
CFAP54Q96N23 FAAH-201ENST00000243167 2094 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
CFAP54Q96N23 METTL26-203ENST00000397664 604 ntTSL 2 BASIC22.29■■□□□ 1.16
CFAP54Q96N23 AL050303.2-201ENST00000619798 666 ntBASIC22.29■■□□□ 1.16
CFAP54Q96N23 CAPN10-203ENST00000352879 862 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
CFAP54Q96N23 AC073210.2-201ENST00000430369 194 ntBASIC22.28■■□□□ 1.16
CFAP54Q96N23 FMR1-AS1_2.1-201ENST00000613724 127 ntBASIC22.28■■□□□ 1.16
CFAP54Q96N23 CBWD2-203ENST00000416503 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC22.28■■□□□ 1.16
CFAP54Q96N23 POU5F1P3-201ENST00000428824 1078 ntBASIC22.28■■□□□ 1.16
CFAP54Q96N23 TP53I11-215ENST00000531928 1078 ntTSL 3 BASIC22.28■■□□□ 1.16
CFAP54Q96N23 SNCB-206ENST00000614675 1407 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
CFAP54Q96N23 MAPK13-201ENST00000211287 2052 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
CFAP54Q96N23 TMEM55B-201ENST00000250489 1961 ntAPPRIS P3 TSL 1 (best) BASIC22.28■■□□□ 1.16
CFAP54Q96N23 TRAPPC5-201ENST00000317378 790 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
CFAP54Q96N23 ARPC5L-202ENST00000353214 2507 ntAPPRIS P1 TSL 2 BASIC22.27■■□□□ 1.16
CFAP54Q96N23 RNF19B-201ENST00000235150 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC22.27■■□□□ 1.16
CFAP54Q96N23 GCSHP5-201ENST00000443090 522 ntBASIC22.27■■□□□ 1.16
CFAP54Q96N23 AC145207.2-202ENST00000576554 565 ntTSL 5 BASIC22.27■■□□□ 1.16
CFAP54Q96N23 GPX1-204ENST00000620890 897 ntAPPRIS ALT2 TSL 5 BASIC22.27■■□□□ 1.16
CFAP54Q96N23 ERN1-208ENST00000606895 2068 ntBASIC22.27■■□□□ 1.16
CFAP54Q96N23 MAGI2-AS3-211ENST00000451809 707 ntTSL 3 BASIC22.27■■□□□ 1.15
CFAP54Q96N23 ECHDC3-201ENST00000379215 1649 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.15
CFAP54Q96N23 TMUB1-202ENST00000392818 1563 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
CFAP54Q96N23 AC011511.4-201ENST00000586529 1850 ntAPPRIS P1 TSL 5 BASIC22.26■■□□□ 1.15
CFAP54Q96N23 PACRGL-206ENST00000502374 1034 ntTSL 2 BASIC22.26■■□□□ 1.15
CFAP54Q96N23 AC083906.2-201ENST00000511578 360 ntBASIC22.26■■□□□ 1.15
CFAP54Q96N23 C14orf80-206ENST00000392527 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC22.26■■□□□ 1.15
CFAP54Q96N23 ARHGEF35-201ENST00000378115 2431 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
CFAP54Q96N23 ZNF768-201ENST00000380412 2315 ntAPPRIS P2 TSL 1 (best) BASIC22.26■■□□□ 1.15
CFAP54Q96N23 RAC1-202ENST00000356142 907 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
CFAP54Q96N23 YKT6-207ENST00000496112 1270 ntTSL 2 BASIC22.26■■□□□ 1.15
CFAP54Q96N23 SNAI3-AS1-201ENST00000563261 998 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
CFAP54Q96N23 TFG-210ENST00000620299 1289 ntTSL 5 BASIC22.26■■□□□ 1.15
CFAP54Q96N23 DLX2-202ENST00000466293 1852 ntTSL 2 BASIC22.26■■□□□ 1.15
CFAP54Q96N23 KCNQ2-201ENST00000344425 1426 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
CFAP54Q96N23 AC004854.2-201ENST00000608450 1441 ntBASIC22.26■■□□□ 1.15
CFAP54Q96N23 PRKCZ-AS1-201ENST00000333854 1253 ntTSL 2 BASIC22.25■■□□□ 1.15
CFAP54Q96N23 LGALS7-201ENST00000378626 466 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
CFAP54Q96N23 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC22.25■■□□□ 1.15
CFAP54Q96N23 LINC00969-219ENST00000453324 1439 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
CFAP54Q96N23 COX20-201ENST00000366528 568 ntTSL 2 BASIC22.25■■□□□ 1.15
CFAP54Q96N23 HNRNPAB-201ENST00000355836 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC22.25■■□□□ 1.15
CFAP54Q96N23 FUT11-202ENST00000394790 2175 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
CFAP54Q96N23 PFKFB4-204ENST00000416568 1575 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
CFAP54Q96N23 P2RX2-201ENST00000343948 1494 ntAPPRIS P4 TSL 1 (best) BASIC22.25■■□□□ 1.15
CFAP54Q96N23 CCR10-201ENST00000332438 1773 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
Retrieved 100 of 98,524 protein–RNA pairs in 16.2 ms