Protein–RNA interactions for Protein: Q7Z3V4

UBE3B, Ubiquitin-protein ligase E3B, humanhuman

Predictions only

Length 1,068 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3BQ7Z3V4 SDSL-201ENST00000345635 1397 ntAPPRIS P1 TSL 1 (best) BASIC28.24■■■□□ 2.11
UBE3BQ7Z3V4 ARFIP2-202ENST00000396777 1868 ntAPPRIS P1 TSL 2 BASIC28.23■■■□□ 2.11
UBE3BQ7Z3V4 PRMT5-213ENST00000553897 1857 ntTSL 2 BASIC28.23■■■□□ 2.11
UBE3BQ7Z3V4 TTLL1-201ENST00000266254 1645 ntAPPRIS P1 TSL 1 (best) BASIC28.23■■■□□ 2.11
UBE3BQ7Z3V4 RASGEF1B-208ENST00000510780 539 ntTSL 3 BASIC28.23■■■□□ 2.11
UBE3BQ7Z3V4 RASGEF1B-209ENST00000512343 498 ntTSL 3 BASIC28.23■■■□□ 2.11
UBE3BQ7Z3V4 SCO2-204ENST00000543927 1051 ntAPPRIS P1 TSL 2 BASIC28.23■■■□□ 2.11
UBE3BQ7Z3V4 MAG-206ENST00000597035 542 ntTSL 4 BASIC28.23■■■□□ 2.11
UBE3BQ7Z3V4 SYNGR3-202ENST00000562045 1743 ntTSL 2 BASIC28.23■■■□□ 2.11
UBE3BQ7Z3V4 PPAN-201ENST00000253107 1657 ntAPPRIS P1 TSL 1 (best) BASIC28.23■■■□□ 2.11
UBE3BQ7Z3V4 pRNA.6-201ENST00000610482 90 ntBASIC28.22■■■□□ 2.11
UBE3BQ7Z3V4 pRNA.5-201ENST00000612139 90 ntBASIC28.22■■■□□ 2.11
UBE3BQ7Z3V4 pRNA.11-201ENST00000618423 90 ntBASIC28.22■■■□□ 2.11
UBE3BQ7Z3V4 pRNA.13-201ENST00000619112 90 ntBASIC28.22■■■□□ 2.11
UBE3BQ7Z3V4 ZFYVE28-202ENST00000503000 1874 ntTSL 1 (best) BASIC28.21■■■□□ 2.11
UBE3BQ7Z3V4 EGR4-201ENST00000436467 2377 ntAPPRIS ALT2 TSL 1 (best) BASIC28.21■■■□□ 2.11
UBE3BQ7Z3V4 CLPTM1-201ENST00000337392 2604 ntAPPRIS P1 TSL 1 (best) BASIC28.21■■■□□ 2.11
UBE3BQ7Z3V4 CBWD3-212ENST00000616550 721 ntTSL 2 BASIC28.21■■■□□ 2.11
UBE3BQ7Z3V4 CBWD6-216ENST00000617933 721 ntTSL 3 BASIC28.21■■■□□ 2.11
UBE3BQ7Z3V4 TTC34-202ENST00000637179 1775 ntAPPRIS P2 TSL 5 BASIC28.21■■■□□ 2.11
UBE3BQ7Z3V4 PPP1R26-201ENST00000356818 4932 ntAPPRIS P1 TSL 1 (best) BASIC28.21■■■□□ 2.11
UBE3BQ7Z3V4 FAM47E-201ENST00000424749 1484 ntAPPRIS P3 TSL 5 BASIC28.21■■■□□ 2.11
UBE3BQ7Z3V4 SIRT3-204ENST00000525319 1475 ntAPPRIS ALT2 TSL 2 BASIC28.21■■■□□ 2.11
UBE3BQ7Z3V4 NRG1-210ENST00000520407 1955 ntTSL 1 (best) BASIC28.2■■■□□ 2.11
UBE3BQ7Z3V4 ZDHHC16-205ENST00000370846 1280 ntTSL 3 BASIC28.2■■■□□ 2.1
UBE3BQ7Z3V4 HYI-204ENST00000372432 1066 ntTSL 1 (best) BASIC28.2■■■□□ 2.1
UBE3BQ7Z3V4 AC007009.1-201ENST00000458624 429 ntTSL 2 BASIC28.2■■■□□ 2.1
UBE3BQ7Z3V4 AC007448.3-201ENST00000585193 689 ntTSL 2 BASIC28.2■■■□□ 2.1
UBE3BQ7Z3V4 CAPNS1-207ENST00000589146 578 ntTSL 3 BASIC28.2■■■□□ 2.1
UBE3BQ7Z3V4 NFKBIE-201ENST00000275015 2581 ntTSL 1 (best) BASIC28.2■■■□□ 2.1
UBE3BQ7Z3V4 PREB-202ENST00000406567 1910 ntTSL 5 BASIC28.2■■■□□ 2.1
UBE3BQ7Z3V4 ACAA1-219ENST00000625927 1760 ntTSL 5 BASIC28.19■■■□□ 2.1
UBE3BQ7Z3V4 KCNIP1-203ENST00000390656 2249 ntTSL 5 BASIC28.19■■■□□ 2.1
UBE3BQ7Z3V4 HOMER2-201ENST00000304231 1990 ntAPPRIS P4 TSL 5 BASIC28.19■■■□□ 2.1
UBE3BQ7Z3V4 FAIM-203ENST00000393034 927 ntAPPRIS P3 TSL 2 BASIC28.19■■■□□ 2.1
UBE3BQ7Z3V4 AC105265.2-201ENST00000467189 838 ntBASIC28.19■■■□□ 2.1
UBE3BQ7Z3V4 AC091305.1-201ENST00000479476 895 ntBASIC28.19■■■□□ 2.1
UBE3BQ7Z3V4 CDKN2A-210ENST00000530628 748 ntAPPRIS P1 TSL 5 BASIC28.19■■■□□ 2.1
UBE3BQ7Z3V4 C15orf61-202ENST00000557807 769 ntTSL 2 BASIC28.19■■■□□ 2.1
UBE3BQ7Z3V4 AC008764.7-201ENST00000593779 1081 ntBASIC28.19■■■□□ 2.1
UBE3BQ7Z3V4 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC28.19■■■□□ 2.1
UBE3BQ7Z3V4 IRF3-228ENST00000601291 1556 ntTSL 1 (best) BASIC28.19■■■□□ 2.1
UBE3BQ7Z3V4 PICALM-202ENST00000393346 2340 ntAPPRIS P3 TSL 1 (best) BASIC28.19■■■□□ 2.1
UBE3BQ7Z3V4 SCAMP3-202ENST00000355379 1537 ntTSL 1 (best) BASIC28.18■■■□□ 2.1
UBE3BQ7Z3V4 METTL9-202ENST00000396014 1817 ntAPPRIS ALT1 TSL 1 (best) BASIC28.18■■■□□ 2.1
UBE3BQ7Z3V4 AC068580.1-201ENST00000446489 252 ntTSL 3 BASIC28.18■■■□□ 2.1
UBE3BQ7Z3V4 SYNGR3-206ENST00000618464 1213 ntTSL 1 (best) BASIC28.18■■■□□ 2.1
UBE3BQ7Z3V4 ARIH2OS-201ENST00000408959 1598 ntAPPRIS P1 BASIC28.18■■■□□ 2.1
UBE3BQ7Z3V4 CHST6-202ENST00000390664 2093 ntAPPRIS P1 TSL 1 (best) BASIC28.18■■■□□ 2.1
UBE3BQ7Z3V4 ABCB10P4-201ENST00000566803 2184 ntBASIC28.18■■■□□ 2.1
UBE3BQ7Z3V4 ZC3H14-202ENST00000302216 2560 ntTSL 1 (best) BASIC28.18■■■□□ 2.1
UBE3BQ7Z3V4 PINK1-201ENST00000321556 2660 ntAPPRIS P1 TSL 1 (best) BASIC28.18■■■□□ 2.1
UBE3BQ7Z3V4 ZNF767P-202ENST00000472212 2100 ntTSL 1 (best) BASIC28.18■■■□□ 2.1
UBE3BQ7Z3V4 ARL6IP4-201ENST00000315580 1644 ntAPPRIS P3 TSL 1 (best) BASIC28.18■■■□□ 2.1
UBE3BQ7Z3V4 LENG1-201ENST00000222224 1542 ntAPPRIS P1 TSL 1 (best) BASIC28.18■■■□□ 2.1
UBE3BQ7Z3V4 LRRC24-201ENST00000529415 1758 ntAPPRIS P2 TSL 1 (best) BASIC28.17■■■□□ 2.1
UBE3BQ7Z3V4 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC28.17■■■□□ 2.1
UBE3BQ7Z3V4 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC28.17■■■□□ 2.1
UBE3BQ7Z3V4 LINC00472-204ENST00000436803 667 ntTSL 5 BASIC28.17■■■□□ 2.1
UBE3BQ7Z3V4 STOX2-205ENST00000513034 807 ntTSL 3 BASIC28.17■■■□□ 2.1
UBE3BQ7Z3V4 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC28.17■■■□□ 2.1
UBE3BQ7Z3V4 ZNRF1-201ENST00000320619 2479 ntTSL 1 (best) BASIC28.16■■■□□ 2.1
UBE3BQ7Z3V4 PXK-202ENST00000356151 2037 ntAPPRIS P1 TSL 1 (best) BASIC28.16■■■□□ 2.1
UBE3BQ7Z3V4 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC28.16■■■□□ 2.1
UBE3BQ7Z3V4 RHOQ-201ENST00000238738 2975 ntAPPRIS P1 TSL 1 (best) BASIC28.16■■■□□ 2.1
UBE3BQ7Z3V4 P2RX2-202ENST00000348800 1222 ntAPPRIS ALT2 TSL 1 (best) BASIC28.16■■■□□ 2.1
UBE3BQ7Z3V4 P2RX2-204ENST00000351222 1140 ntTSL 1 (best) BASIC28.16■■■□□ 2.1
UBE3BQ7Z3V4 P2RX2-207ENST00000449132 1113 ntTSL 1 (best) BASIC28.16■■■□□ 2.1
UBE3BQ7Z3V4 LRRK1-208ENST00000532029 1241 ntTSL 1 (best) BASIC28.16■■■□□ 2.1
UBE3BQ7Z3V4 AC027682.1-201ENST00000562846 899 ntBASIC28.16■■■□□ 2.1
UBE3BQ7Z3V4 TIMM50-201ENST00000314349 1612 ntAPPRIS P2 TSL 1 (best) BASIC28.16■■■□□ 2.1
UBE3BQ7Z3V4 PON2-217ENST00000633192 1876 ntTSL 1 (best) BASIC28.16■■■□□ 2.1
UBE3BQ7Z3V4 ACP4-201ENST00000270593 1347 ntAPPRIS P1 TSL 1 (best) BASIC28.16■■■□□ 2.1
UBE3BQ7Z3V4 CEBPB-201ENST00000303004 1956 ntAPPRIS P1 BASIC28.15■■■□□ 2.1
UBE3BQ7Z3V4 ST7L-221ENST00000490067 1780 ntTSL 1 (best) BASIC28.15■■■□□ 2.1
UBE3BQ7Z3V4 SNAI3-AS1-201ENST00000563261 998 ntTSL 1 (best) BASIC28.15■■■□□ 2.1
UBE3BQ7Z3V4 ACAP1-206ENST00000571471 320 ntTSL 2 BASIC28.15■■■□□ 2.1
UBE3BQ7Z3V4 CA15P2-201ENST00000611168 834 ntBASIC28.15■■■□□ 2.1
UBE3BQ7Z3V4 GAS2L1-201ENST00000406549 1803 ntTSL 1 (best) BASIC28.15■■■□□ 2.1
UBE3BQ7Z3V4 IDH2-202ENST00000540499 1453 ntTSL 2 BASIC28.15■■■□□ 2.1
UBE3BQ7Z3V4 KBTBD13-201ENST00000432196 1377 ntAPPRIS P1 BASIC28.14■■■□□ 2.1
UBE3BQ7Z3V4 SAMD8-202ENST00000372690 1654 ntTSL 1 (best) BASIC28.14■■■□□ 2.1
UBE3BQ7Z3V4 RPIA-201ENST00000283646 1848 ntAPPRIS P1 TSL 1 (best) BASIC28.14■■■□□ 2.1
UBE3BQ7Z3V4 AC099791.1-201ENST00000416440 715 ntBASIC28.14■■■□□ 2.1
UBE3BQ7Z3V4 ATP10A-207ENST00000619904 988 ntTSL 5 BASIC28.14■■■□□ 2.1
UBE3BQ7Z3V4 KISS1R-201ENST00000234371 1625 ntAPPRIS P1 TSL 1 (best) BASIC28.14■■■□□ 2.09
UBE3BQ7Z3V4 RASA4CP-201ENST00000424092 1398 ntBASIC28.13■■■□□ 2.09
UBE3BQ7Z3V4 DALRD3-206ENST00000441576 1706 ntTSL 1 (best) BASIC28.13■■■□□ 2.09
UBE3BQ7Z3V4 SLC25A29-201ENST00000359232 2385 ntAPPRIS P1 TSL 1 (best) BASIC28.13■■■□□ 2.09
UBE3BQ7Z3V4 SESN3-202ENST00000416495 1408 ntTSL 1 (best) BASIC28.13■■■□□ 2.09
UBE3BQ7Z3V4 STOML2-201ENST00000356493 1278 ntAPPRIS P1 TSL 1 (best) BASIC28.13■■■□□ 2.09
UBE3BQ7Z3V4 CTAG2-202ENST00000369585 748 ntAPPRIS P1 TSL 1 (best) BASIC28.13■■■□□ 2.09
UBE3BQ7Z3V4 NKX2-2-AS1-201ENST00000549659 638 ntTSL 5 BASIC28.13■■■□□ 2.09
UBE3BQ7Z3V4 AC096887.1-203ENST00000607203 768 ntAPPRIS ALT2 TSL 5 BASIC28.13■■■□□ 2.09
UBE3BQ7Z3V4 LSM8-203ENST00000422760 1920 ntTSL 1 (best) BASIC28.13■■■□□ 2.09
UBE3BQ7Z3V4 USF3-203ENST00000491165 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC28.13■■■□□ 2.09
UBE3BQ7Z3V4 KLC3-202ENST00000470402 1820 ntTSL 1 (best) BASIC28.13■■■□□ 2.09
UBE3BQ7Z3V4 DPY19L1-209ENST00000638088 5075 ntAPPRIS ALT2 TSL 5 BASIC28.13■■■□□ 2.09
UBE3BQ7Z3V4 XBP1-201ENST00000216037 1850 ntAPPRIS P2 TSL 1 (best) BASIC28.12■■■□□ 2.09
UBE3BQ7Z3V4 HSPE1-203ENST00000409729 478 ntTSL 2 BASIC28.12■■■□□ 2.09
Retrieved 100 of 98,524 protein–RNA pairs in 22.8 ms