Protein–RNA interactions for Protein: Q6ZV77

C9orf139, Uncharacterized protein C9orf139, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf139Q6ZV77 MAZ-202ENST00000322945 2532 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
C9orf139Q6ZV77 AL353743.1-201ENST00000637846 1769 ntTSL 5 BASIC18.2■□□□□ 0.5
C9orf139Q6ZV77 LENG1-201ENST00000222224 1542 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
C9orf139Q6ZV77 HSD11B1L-206ENST00000423665 1525 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
C9orf139Q6ZV77 TOP2B-204ENST00000435706 5389 ntAPPRIS P3 TSL 1 (best) BASIC18.2■□□□□ 0.5
C9orf139Q6ZV77 HNRNPL-201ENST00000221419 2471 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
C9orf139Q6ZV77 AP2M1-202ENST00000382456 2091 ntAPPRIS ALT1 TSL 1 (best) BASIC18.2■□□□□ 0.5
C9orf139Q6ZV77 KLRG2-202ENST00000393039 1148 ntTSL 5 BASIC18.2■□□□□ 0.5
C9orf139Q6ZV77 FAM66C-205ENST00000456135 1216 ntTSL 5 BASIC18.2■□□□□ 0.5
C9orf139Q6ZV77 pRNA.6-201ENST00000610482 90 ntBASIC18.2■□□□□ 0.5
C9orf139Q6ZV77 pRNA.5-201ENST00000612139 90 ntBASIC18.2■□□□□ 0.5
C9orf139Q6ZV77 pRNA.11-201ENST00000618423 90 ntBASIC18.2■□□□□ 0.5
C9orf139Q6ZV77 pRNA.13-201ENST00000619112 90 ntBASIC18.2■□□□□ 0.5
C9orf139Q6ZV77 FAHD1-203ENST00000427358 1974 ntAPPRIS P1 BASIC18.2■□□□□ 0.5
C9orf139Q6ZV77 ARPC5L-201ENST00000259477 1325 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
C9orf139Q6ZV77 FAM47E-201ENST00000424749 1484 ntAPPRIS P3 TSL 5 BASIC18.2■□□□□ 0.5
C9orf139Q6ZV77 NFKBIB-204ENST00000572515 1929 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
C9orf139Q6ZV77 SIX2-201ENST00000303077 2205 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
C9orf139Q6ZV77 RCN2-202ENST00000394883 1366 ntTSL 5 BASIC18.19■□□□□ 0.5
C9orf139Q6ZV77 MORF4L1-202ENST00000379535 2274 ntTSL 2 BASIC18.19■□□□□ 0.5
C9orf139Q6ZV77 DDX42-201ENST00000359353 2783 ntTSL 5 BASIC18.19■□□□□ 0.5
C9orf139Q6ZV77 CCDC160-201ENST00000370809 1299 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
C9orf139Q6ZV77 TSPY4-201ENST00000383008 1143 ntAPPRIS ALT2 TSL 5 BASIC18.19■□□□□ 0.5
C9orf139Q6ZV77 NGEF-203ENST00000409079 1022 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
C9orf139Q6ZV77 AC116614.1-201ENST00000456949 539 ntTSL 2 BASIC18.19■□□□□ 0.5
C9orf139Q6ZV77 LRRK1-208ENST00000532029 1241 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
C9orf139Q6ZV77 PIM3-201ENST00000360612 2369 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
C9orf139Q6ZV77 C4orf19-202ENST00000381980 1943 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
C9orf139Q6ZV77 SPANXA2-OT1-201ENST00000622372 1686 ntTSL 2 BASIC18.18■□□□□ 0.5
C9orf139Q6ZV77 ALKAL2-204ENST00000403610 1389 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
C9orf139Q6ZV77 AF117829.1-207ENST00000504145 1572 ntTSL 3 BASIC18.18■□□□□ 0.5
C9orf139Q6ZV77 UBE2C-202ENST00000335046 737 ntTSL 2 BASIC18.18■□□□□ 0.5
C9orf139Q6ZV77 METTL23-201ENST00000341249 1155 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
C9orf139Q6ZV77 ATP5C1-202ENST00000356708 1163 ntAPPRIS ALT1 TSL 1 (best) BASIC18.18■□□□□ 0.5
C9orf139Q6ZV77 CLYBL-202ENST00000376354 1127 ntTSL 5 BASIC18.18■□□□□ 0.5
C9orf139Q6ZV77 CDC37L1-202ENST00000381858 1244 ntTSL 5 BASIC18.18■□□□□ 0.5
C9orf139Q6ZV77 ATP6V0B-204ENST00000471859 865 ntTSL 5 BASIC18.18■□□□□ 0.5
C9orf139Q6ZV77 RHOF-204ENST00000537265 699 ntTSL 2 BASIC18.18■□□□□ 0.5
C9orf139Q6ZV77 SUGCT-201ENST00000335693 1645 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
C9orf139Q6ZV77 LTBP3-212ENST00000529189 1997 ntTSL 2 BASIC18.18■□□□□ 0.5
C9orf139Q6ZV77 GGTA1P-203ENST00000481799 1487 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
C9orf139Q6ZV77 ZNF837-201ENST00000427624 2038 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
C9orf139Q6ZV77 OSCAR-211ENST00000617140 1547 ntAPPRIS ALT2 TSL 5 BASIC18.18■□□□□ 0.5
C9orf139Q6ZV77 MAP2K2-201ENST00000262948 1734 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
C9orf139Q6ZV77 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC18.17■□□□□ 0.5
C9orf139Q6ZV77 AKT1S1-203ENST00000391831 2025 ntAPPRIS P1 TSL 2 BASIC18.17■□□□□ 0.5
C9orf139Q6ZV77 LHX3-201ENST00000371746 2403 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
C9orf139Q6ZV77 GLTPD2-201ENST00000331264 1023 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
C9orf139Q6ZV77 RPUSD3-206ENST00000433535 1178 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
C9orf139Q6ZV77 SIRT3-215ENST00000532956 1235 ntTSL 2 BASIC18.17■□□□□ 0.5
C9orf139Q6ZV77 AC104564.3-201ENST00000582367 638 ntBASIC18.17■□□□□ 0.5
C9orf139Q6ZV77 ZNF846-212ENST00000592859 1206 ntTSL 2 BASIC18.17■□□□□ 0.5
C9orf139Q6ZV77 AC096887.1-203ENST00000607203 768 ntAPPRIS ALT2 TSL 5 BASIC18.17■□□□□ 0.5
C9orf139Q6ZV77 TBC1D10A-201ENST00000215790 2077 ntAPPRIS P3 TSL 1 (best) BASIC18.17■□□□□ 0.5
C9orf139Q6ZV77 BBC3-203ENST00000439096 1838 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
C9orf139Q6ZV77 SESN3-202ENST00000416495 1408 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
C9orf139Q6ZV77 SRPK3-205ENST00000393786 1900 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
C9orf139Q6ZV77 FAM222B-213ENST00000583522 556 ntTSL 2 BASIC18.16■□□□□ 0.5
C9orf139Q6ZV77 AES-207ENST00000586839 942 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
C9orf139Q6ZV77 ADSSL1-202ENST00000332972 1969 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
C9orf139Q6ZV77 SSX2IP-203ENST00000437941 5843 ntTSL 2 BASIC18.16■□□□□ 0.5
C9orf139Q6ZV77 SETD9-201ENST00000285947 1619 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
C9orf139Q6ZV77 MYCL-201ENST00000372815 1944 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
C9orf139Q6ZV77 HHEX-201ENST00000282728 1727 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
C9orf139Q6ZV77 AC135731.1-201ENST00000569415 2548 ntBASIC18.15■□□□□ 0.5
C9orf139Q6ZV77 CDH23-206ENST00000398842 1759 ntTSL 5 BASIC18.15■□□□□ 0.5
C9orf139Q6ZV77 SYNGR3-201ENST00000248121 2051 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
C9orf139Q6ZV77 C20orf144-201ENST00000375222 571 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
C9orf139Q6ZV77 GRAMD4P2-201ENST00000423297 1097 ntBASIC18.15■□□□□ 0.5
C9orf139Q6ZV77 AC008443.4-201ENST00000503314 456 ntTSL 4 BASIC18.15■□□□□ 0.5
C9orf139Q6ZV77 AIPL1-206ENST00000571740 1202 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
C9orf139Q6ZV77 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
C9orf139Q6ZV77 ARL6IP4-201ENST00000315580 1644 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
C9orf139Q6ZV77 HAUS7-202ENST00000370211 1363 ntAPPRIS P2 TSL 1 (best) BASIC18.15■□□□□ 0.5
C9orf139Q6ZV77 FP325331.1-202ENST00000623531 1380 ntBASIC18.15■□□□□ 0.5
C9orf139Q6ZV77 ARHGEF35-201ENST00000378115 2431 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
C9orf139Q6ZV77 LIMD2-205ENST00000578402 1534 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
C9orf139Q6ZV77 STMN4-204ENST00000519997 1623 ntTSL 2 BASIC18.14■□□□□ 0.49
C9orf139Q6ZV77 AK1-201ENST00000223836 736 ntTSL 3 BASIC18.14■□□□□ 0.49
C9orf139Q6ZV77 IGHV3-20-201ENST00000390606 415 ntAPPRIS P1 BASIC18.14■□□□□ 0.49
C9orf139Q6ZV77 UBE2E2-203ENST00000425792 1248 ntAPPRIS P1 TSL 2 BASIC18.14■□□□□ 0.49
C9orf139Q6ZV77 PLD4-205ENST00000553861 667 ntTSL 2 BASIC18.14■□□□□ 0.49
C9orf139Q6ZV77 AC092666.2-201ENST00000613287 246 ntBASIC18.14■□□□□ 0.49
C9orf139Q6ZV77 TRAF4-217ENST00000618771 543 ntTSL 5 BASIC18.14■□□□□ 0.49
C9orf139Q6ZV77 SMARCB1-201ENST00000263121 1690 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.49
C9orf139Q6ZV77 AC142381.3-201ENST00000568208 1670 ntBASIC18.14■□□□□ 0.49
C9orf139Q6ZV77 SYNGR3-202ENST00000562045 1743 ntTSL 2 BASIC18.14■□□□□ 0.49
C9orf139Q6ZV77 ST7L-221ENST00000490067 1780 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
C9orf139Q6ZV77 ESRRA-203ENST00000406310 2218 ntAPPRIS ALT1 TSL 1 (best) BASIC18.14■□□□□ 0.49
C9orf139Q6ZV77 SIGLEC15-201ENST00000389474 1573 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
C9orf139Q6ZV77 AC064853.3-201ENST00000641801 1658 ntAPPRIS P1 BASIC18.13■□□□□ 0.49
C9orf139Q6ZV77 OTUD5-201ENST00000156084 2740 ntAPPRIS P3 TSL 1 (best) BASIC18.13■□□□□ 0.49
C9orf139Q6ZV77 ASB1-202ENST00000409297 878 ntTSL 5 BASIC18.13■□□□□ 0.49
C9orf139Q6ZV77 AICDA-202ENST00000537228 667 ntTSL 5 BASIC18.13■□□□□ 0.49
C9orf139Q6ZV77 ORAI3-202ENST00000562699 628 ntTSL 2 BASIC18.13■□□□□ 0.49
C9orf139Q6ZV77 AL499627.2-201ENST00000606283 725 ntBASIC18.13■□□□□ 0.49
C9orf139Q6ZV77 ANKRD20A6P-201ENST00000618763 204 ntBASIC18.13■□□□□ 0.49
C9orf139Q6ZV77 NAT8L-202ENST00000423729 5870 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
C9orf139Q6ZV77 PRDM13-202ENST00000369215 2429 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
C9orf139Q6ZV77 AF117829.1-201ENST00000519655 1398 ntTSL 5 BASIC18.13■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 26.1 ms