Protein–RNA interactions for Protein: Q5T3J3

LRIF1, Ligand-dependent nuclear receptor-interacting factor 1, humanhuman

Predictions only

Length 769 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRIF1Q5T3J3 KRT18P24-201ENST00000344739 1156 ntBASIC21.25■□□□□ 0.99
LRIF1Q5T3J3 NPHS2-201ENST00000367615 1855 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
LRIF1Q5T3J3 SAMD13-205ENST00000370673 1567 ntTSL 2 BASIC21.25■□□□□ 0.99
LRIF1Q5T3J3 PLA2G10-201ENST00000438167 1000 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
LRIF1Q5T3J3 UBE3C-209ENST00000611269 1866 ntTSL 2 BASIC21.25■□□□□ 0.99
LRIF1Q5T3J3 MAGI2-217ENST00000629359 6704 ntTSL 5 BASIC21.25■□□□□ 0.99
LRIF1Q5T3J3 ZNF354A-201ENST00000335815 2484 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
LRIF1Q5T3J3 ZGPAT-201ENST00000328969 1945 ntTSL 2 BASIC21.24■□□□□ 0.99
LRIF1Q5T3J3 AC004448.1-201ENST00000458332 883 ntBASIC21.24■□□□□ 0.99
LRIF1Q5T3J3 MIR4281-201ENST00000580852 62 ntBASIC21.24■□□□□ 0.99
LRIF1Q5T3J3 AC005551.1-201ENST00000641816 493 ntAPPRIS P1 BASIC21.24■□□□□ 0.99
LRIF1Q5T3J3 SPOCK3-222ENST00000512681 1457 ntTSL 2 BASIC21.24■□□□□ 0.99
LRIF1Q5T3J3 PDIA2-201ENST00000219406 1698 ntAPPRIS P2 TSL 1 (best) BASIC21.24■□□□□ 0.99
LRIF1Q5T3J3 CPE-201ENST00000402744 2421 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
LRIF1Q5T3J3 CLDN5-203ENST00000413119 1760 ntTSL 2 BASIC21.23■□□□□ 0.99
LRIF1Q5T3J3 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
LRIF1Q5T3J3 CDIPT-201ENST00000219789 2353 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
LRIF1Q5T3J3 SETD9-201ENST00000285947 1619 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
LRIF1Q5T3J3 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC21.23■□□□□ 0.99
LRIF1Q5T3J3 CDCA5-202ENST00000404147 1012 ntTSL 2 BASIC21.23■□□□□ 0.99
LRIF1Q5T3J3 ABHD17AP5-201ENST00000580133 923 ntBASIC21.23■□□□□ 0.99
LRIF1Q5T3J3 NTF6A-201ENST00000591175 560 ntBASIC21.23■□□□□ 0.99
LRIF1Q5T3J3 DLL3-202ENST00000356433 2055 ntAPPRIS P1 TSL 2 BASIC21.23■□□□□ 0.99
LRIF1Q5T3J3 TM9SF3-201ENST00000371142 6141 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
LRIF1Q5T3J3 RYK-208ENST00000620660 2942 ntAPPRIS P3 TSL 1 (best) BASIC21.23■□□□□ 0.99
LRIF1Q5T3J3 EGFL8-220ENST00000395512 1312 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
LRIF1Q5T3J3 TOP2B-204ENST00000435706 5389 ntAPPRIS P3 TSL 1 (best) BASIC21.23■□□□□ 0.99
LRIF1Q5T3J3 AC004980.1-201ENST00000418663 2667 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
LRIF1Q5T3J3 MSL1-203ENST00000577454 2081 ntTSL 2 BASIC21.22■□□□□ 0.99
LRIF1Q5T3J3 CT47A7-201ENST00000434883 1288 ntAPPRIS P1 TSL 2 BASIC21.22■□□□□ 0.99
LRIF1Q5T3J3 FIZ1-201ENST00000221665 2660 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
LRIF1Q5T3J3 AL591684.2-201ENST00000605970 1594 ntTSL 5 BASIC21.22■□□□□ 0.99
LRIF1Q5T3J3 BARHL1-201ENST00000263610 2341 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
LRIF1Q5T3J3 PRELID2-201ENST00000334744 2140 ntTSL 2 BASIC21.22■□□□□ 0.99
LRIF1Q5T3J3 HAR1A-201ENST00000433161 1882 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
LRIF1Q5T3J3 BX088645.1-201ENST00000636699 1728 ntAPPRIS P1 TSL 5 BASIC21.21■□□□□ 0.99
LRIF1Q5T3J3 ZNF395-210ENST00000523095 1790 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
LRIF1Q5T3J3 GPSM1-204ENST00000429455 2057 ntTSL 3 BASIC21.21■□□□□ 0.99
LRIF1Q5T3J3 FAM72A-202ENST00000367128 2398 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
LRIF1Q5T3J3 FAM72D-201ENST00000400889 2397 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
LRIF1Q5T3J3 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC21.21■□□□□ 0.99
LRIF1Q5T3J3 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC21.21■□□□□ 0.99
LRIF1Q5T3J3 NKX6-2-201ENST00000368592 2673 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
LRIF1Q5T3J3 GBX1-201ENST00000297537 1092 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
LRIF1Q5T3J3 H2AFY-204ENST00000423969 924 ntTSL 2 BASIC21.21■□□□□ 0.99
LRIF1Q5T3J3 THA1P-201ENST00000590384 1145 ntBASIC21.21■□□□□ 0.99
LRIF1Q5T3J3 AC074183.2-201ENST00000623112 922 ntBASIC21.21■□□□□ 0.99
LRIF1Q5T3J3 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC21.21■□□□□ 0.99
LRIF1Q5T3J3 P4HA3-202ENST00000427714 2248 ntTSL 2 BASIC21.21■□□□□ 0.99
LRIF1Q5T3J3 PLD4-201ENST00000392593 6515 ntAPPRIS P3 TSL 1 (best) BASIC21.21■□□□□ 0.99
LRIF1Q5T3J3 FAR2P4-203ENST00000560285 1739 ntTSL 2 BASIC21.21■□□□□ 0.99
LRIF1Q5T3J3 AP006623.1-201ENST00000506172 2061 ntTSL 5 BASIC21.2■□□□□ 0.99
LRIF1Q5T3J3 AC242852.2-201ENST00000615738 1807 ntBASIC21.2■□□□□ 0.98
LRIF1Q5T3J3 PVT1_1.1-201ENST00000615125 194 ntBASIC21.2■□□□□ 0.98
LRIF1Q5T3J3 REPIN1-214ENST00000489432 2058 ntAPPRIS ALT2 TSL 2 BASIC21.2■□□□□ 0.98
LRIF1Q5T3J3 NBL1-202ENST00000375136 2172 ntAPPRIS P3 TSL 1 (best) BASIC21.2■□□□□ 0.98
LRIF1Q5T3J3 CIDEB-201ENST00000258807 2294 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
LRIF1Q5T3J3 ARIH2OS-201ENST00000408959 1598 ntAPPRIS P1 BASIC21.19■□□□□ 0.98
LRIF1Q5T3J3 DHRS11-215ENST00000618403 1598 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
LRIF1Q5T3J3 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
LRIF1Q5T3J3 MCRIP1-210ENST00000576431 577 ntTSL 5 BASIC21.19■□□□□ 0.98
LRIF1Q5T3J3 H2AFB1-201ENST00000620016 587 ntAPPRIS P1 BASIC21.19■□□□□ 0.98
LRIF1Q5T3J3 SLC25A11-201ENST00000225665 1897 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
LRIF1Q5T3J3 CCDC7-201ENST00000277657 1899 ntAPPRIS P2 TSL 1 (best) BASIC21.19■□□□□ 0.98
LRIF1Q5T3J3 HNRNPM-202ENST00000348943 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
LRIF1Q5T3J3 ADGRA2-202ENST00000412232 5651 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
LRIF1Q5T3J3 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC21.18■□□□□ 0.98
LRIF1Q5T3J3 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC21.18■□□□□ 0.98
LRIF1Q5T3J3 TSNARE1-208ENST00000524325 1963 ntAPPRIS P3 TSL 2 BASIC21.18■□□□□ 0.98
LRIF1Q5T3J3 KCNIP1-201ENST00000328939 2014 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
LRIF1Q5T3J3 PRELID1-201ENST00000303204 1261 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
LRIF1Q5T3J3 ERO1A-211ENST00000629528 998 ntTSL 5 BASIC21.18■□□□□ 0.98
LRIF1Q5T3J3 UROS-204ENST00000368797 1313 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
LRIF1Q5T3J3 STEAP2-207ENST00000402625 1372 ntTSL 5 BASIC21.18■□□□□ 0.98
LRIF1Q5T3J3 IDI1-201ENST00000381344 2301 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
LRIF1Q5T3J3 SCRT2-201ENST00000246104 3577 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
LRIF1Q5T3J3 FRAT1-201ENST00000371021 2649 ntAPPRIS P1 BASIC21.18■□□□□ 0.98
LRIF1Q5T3J3 PELI3-201ENST00000320740 2740 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
LRIF1Q5T3J3 SYT6-209ENST00000610222 1707 ntAPPRIS P1 TSL 5 BASIC21.18■□□□□ 0.98
LRIF1Q5T3J3 STX5-201ENST00000294179 1794 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
LRIF1Q5T3J3 ZFP69B-204ENST00000484445 1976 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
LRIF1Q5T3J3 PPP5C-201ENST00000012443 2109 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
LRIF1Q5T3J3 KCNQ5-213ENST00000629977 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
LRIF1Q5T3J3 VSTM2A-202ENST00000402613 1076 ntTSL 2 BASIC21.17■□□□□ 0.98
LRIF1Q5T3J3 NDUFA10-204ENST00000407129 699 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
LRIF1Q5T3J3 PYY2-202ENST00000441253 1076 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
LRIF1Q5T3J3 BRD4-212ENST00000630599 726 ntTSL 2 BASIC21.17■□□□□ 0.98
LRIF1Q5T3J3 AC145124.1-201ENST00000528514 1361 ntTSL 2 BASIC21.17■□□□□ 0.98
LRIF1Q5T3J3 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
LRIF1Q5T3J3 AL117348.2-201ENST00000432920 1625 ntAPPRIS P1 TSL 2 BASIC21.17■□□□□ 0.98
LRIF1Q5T3J3 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC21.17■□□□□ 0.98
LRIF1Q5T3J3 AC064853.3-201ENST00000641801 1658 ntAPPRIS P1 BASIC21.17■□□□□ 0.98
LRIF1Q5T3J3 PGF-206ENST00000555567 1927 ntAPPRIS P3 TSL 1 (best) BASIC21.17■□□□□ 0.98
LRIF1Q5T3J3 AL353803.4-201ENST00000565882 1934 ntBASIC21.17■□□□□ 0.98
LRIF1Q5T3J3 PLEKHA8-208ENST00000622102 2140 ntTSL 5 BASIC21.17■□□□□ 0.98
LRIF1Q5T3J3 NIPA2-203ENST00000398013 2280 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
LRIF1Q5T3J3 CACNG2-201ENST00000300105 2384 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
LRIF1Q5T3J3 G6PD-202ENST00000393562 2631 ntAPPRIS P3 TSL 1 (best) BASIC21.17■□□□□ 0.98
LRIF1Q5T3J3 G6PD-211ENST00000621232 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
LRIF1Q5T3J3 SRSF11-203ENST00000370951 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 59.1 ms