Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 TMEM240-203ENST00000624426 796 ntTSL 3 BASIC21.99■■□□□ 1.11
PTCHD3Q3KNS1 H19-210ENST00000439725 1929 ntTSL 2 BASIC21.99■■□□□ 1.11
PTCHD3Q3KNS1 NFE2L3P1-201ENST00000588207 1959 ntBASIC21.99■■□□□ 1.11
PTCHD3Q3KNS1 BTBD7-205ENST00000554565 2697 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
PTCHD3Q3KNS1 SLC22A17-201ENST00000206544 2284 ntAPPRIS P4 TSL 1 (best) BASIC21.99■■□□□ 1.11
PTCHD3Q3KNS1 DACT3-201ENST00000300875 2526 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
PTCHD3Q3KNS1 IRF2BP1-201ENST00000302165 2564 ntAPPRIS P1 BASIC21.98■■□□□ 1.11
PTCHD3Q3KNS1 ACTR1B-201ENST00000289228 2243 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
PTCHD3Q3KNS1 CLTB-201ENST00000310418 1215 ntAPPRIS P4 TSL 1 (best) BASIC21.98■■□□□ 1.11
PTCHD3Q3KNS1 CLTB-202ENST00000345807 1161 ntAPPRIS ALT1 TSL 1 (best) BASIC21.98■■□□□ 1.11
PTCHD3Q3KNS1 TNFRSF25-201ENST00000348333 1119 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
PTCHD3Q3KNS1 TNFRSF25-202ENST00000351748 705 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
PTCHD3Q3KNS1 AL117336.3-202ENST00000605499 489 ntTSL 3 BASIC21.98■■□□□ 1.11
PTCHD3Q3KNS1 C6orf89-201ENST00000355190 1309 ntAPPRIS P3 TSL 1 (best) BASIC21.98■■□□□ 1.11
PTCHD3Q3KNS1 DONSON-204ENST00000432378 1618 ntTSL 5 BASIC21.98■■□□□ 1.11
PTCHD3Q3KNS1 CTDSPL-206ENST00000443503 4640 ntAPPRIS ALT1 TSL 1 (best) BASIC21.98■■□□□ 1.11
PTCHD3Q3KNS1 SIGMAR1-201ENST00000277010 1656 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
PTCHD3Q3KNS1 HOMER3-203ENST00000433218 1418 ntAPPRIS ALT1 TSL 5 BASIC21.97■■□□□ 1.11
PTCHD3Q3KNS1 PXK-202ENST00000356151 2037 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
PTCHD3Q3KNS1 HDHD5-203ENST00000399852 1118 ntTSL 3 BASIC21.97■■□□□ 1.11
PTCHD3Q3KNS1 NKX2-5-202ENST00000424406 1124 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
PTCHD3Q3KNS1 AK3-203ENST00000447596 705 ntTSL 2 BASIC21.97■■□□□ 1.11
PTCHD3Q3KNS1 AL356740.2-201ENST00000601559 647 ntBASIC21.97■■□□□ 1.11
PTCHD3Q3KNS1 AL445237.1-202ENST00000604581 425 ntTSL 5 BASIC21.97■■□□□ 1.11
PTCHD3Q3KNS1 PCDH1-204ENST00000503492 2373 ntTSL 5 BASIC21.97■■□□□ 1.11
PTCHD3Q3KNS1 MTMR14-202ENST00000351233 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC21.97■■□□□ 1.11
PTCHD3Q3KNS1 MEIOB-202ENST00000397344 1792 ntTSL 5 BASIC21.97■■□□□ 1.11
PTCHD3Q3KNS1 TTC34-202ENST00000637179 1775 ntAPPRIS P2 TSL 5 BASIC21.97■■□□□ 1.11
PTCHD3Q3KNS1 CDC16-206ENST00000375310 2156 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
PTCHD3Q3KNS1 MRPL38-201ENST00000309352 1888 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
PTCHD3Q3KNS1 IRF3-228ENST00000601291 1556 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
PTCHD3Q3KNS1 POU2F3-206ENST00000543440 1953 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
PTCHD3Q3KNS1 FAM86JP-203ENST00000485843 2012 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
PTCHD3Q3KNS1 C18orf65-201ENST00000622985 2076 ntTSL 2 BASIC21.96■■□□□ 1.11
PTCHD3Q3KNS1 FAM173A-201ENST00000219535 806 ntAPPRIS ALT2 TSL 2 BASIC21.96■■□□□ 1.11
PTCHD3Q3KNS1 RAB33A-201ENST00000257017 1258 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
PTCHD3Q3KNS1 SPAG16-201ENST00000272898 1059 ntTSL 5 BASIC21.96■■□□□ 1.11
PTCHD3Q3KNS1 TMEM147-203ENST00000392205 767 ntTSL 2 BASIC21.96■■□□□ 1.11
PTCHD3Q3KNS1 TNFRSF10B-202ENST00000347739 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC21.96■■□□□ 1.11
PTCHD3Q3KNS1 AC092068.2-201ENST00000590491 1708 ntBASIC21.96■■□□□ 1.11
PTCHD3Q3KNS1 ANKRD54-201ENST00000215941 2184 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
PTCHD3Q3KNS1 CDX1-201ENST00000231656 1758 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
PTCHD3Q3KNS1 LMTK3-201ENST00000270238 4972 ntAPPRIS P2 TSL 1 (best) BASIC21.96■■□□□ 1.11
PTCHD3Q3KNS1 HYAL2-207ENST00000442581 2318 ntAPPRIS P1 TSL 2 BASIC21.96■■□□□ 1.11
PTCHD3Q3KNS1 POLDIP2-201ENST00000540200 2121 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.11
PTCHD3Q3KNS1 AL117348.2-201ENST00000432920 1625 ntAPPRIS P1 TSL 2 BASIC21.95■■□□□ 1.1
PTCHD3Q3KNS1 ZNF213-208ENST00000576416 2240 ntAPPRIS P1 TSL 2 BASIC21.95■■□□□ 1.1
PTCHD3Q3KNS1 IRF3-201ENST00000309877 1691 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
PTCHD3Q3KNS1 METTL9-202ENST00000396014 1817 ntAPPRIS ALT1 TSL 1 (best) BASIC21.95■■□□□ 1.1
PTCHD3Q3KNS1 TRIM7-202ENST00000334421 1228 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
PTCHD3Q3KNS1 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC21.95■■□□□ 1.1
PTCHD3Q3KNS1 AC004540.2-202ENST00000451264 508 ntTSL 2 BASIC21.95■■□□□ 1.1
PTCHD3Q3KNS1 CDKN3-207ENST00000543789 610 ntTSL 5 BASIC21.95■■□□□ 1.1
PTCHD3Q3KNS1 ARF1-213ENST00000540651 1972 ntAPPRIS P1 TSL 2 BASIC21.95■■□□□ 1.1
PTCHD3Q3KNS1 DNAAF3-203ENST00000524407 2059 ntAPPRIS ALT2 TSL 1 (best) BASIC21.95■■□□□ 1.1
PTCHD3Q3KNS1 IQCJ-SCHIP1-202ENST00000460298 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC21.94■■□□□ 1.1
PTCHD3Q3KNS1 ZSCAN18-212ENST00000600404 1934 ntAPPRIS ALT2 TSL 2 BASIC21.94■■□□□ 1.1
PTCHD3Q3KNS1 AL136116.3-201ENST00000402907 1138 ntBASIC21.94■■□□□ 1.1
PTCHD3Q3KNS1 CLTA-206ENST00000466396 695 ntTSL 2 BASIC21.94■■□□□ 1.1
PTCHD3Q3KNS1 RNF225-201ENST00000601382 990 ntAPPRIS P1 BASIC21.94■■□□□ 1.1
PTCHD3Q3KNS1 SETD9-201ENST00000285947 1619 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
PTCHD3Q3KNS1 C7orf26-202ENST00000359073 1762 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
PTCHD3Q3KNS1 DOHH-201ENST00000427575 2031 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
PTCHD3Q3KNS1 RANBP10-206ENST00000602677 2374 ntTSL 5 BASIC21.94■■□□□ 1.1
PTCHD3Q3KNS1 KCNIP2-206ENST00000356640 1989 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
PTCHD3Q3KNS1 DNAJC25-GNG10-201ENST00000374294 1448 ntAPPRIS P1 TSL 2 BASIC21.93■■□□□ 1.1
PTCHD3Q3KNS1 EEF1D-203ENST00000419152 1452 ntAPPRIS ALT2 TSL 5 BASIC21.93■■□□□ 1.1
PTCHD3Q3KNS1 FAM228B-208ENST00000613899 1238 ntAPPRIS ALT2 TSL 1 (best) BASIC21.93■■□□□ 1.1
PTCHD3Q3KNS1 Z98883.1-202ENST00000635107 1289 ntTSL 5 BASIC21.93■■□□□ 1.1
PTCHD3Q3KNS1 PHC2-202ENST00000373418 2550 ntAPPRIS ALT2 TSL 1 (best) BASIC21.93■■□□□ 1.1
PTCHD3Q3KNS1 ARL2-SNX15-201ENST00000301886 2392 ntAPPRIS P1 TSL 2 BASIC21.92■■□□□ 1.1
PTCHD3Q3KNS1 AC064853.3-201ENST00000641801 1658 ntAPPRIS P1 BASIC21.92■■□□□ 1.1
PTCHD3Q3KNS1 SPG21-202ENST00000416889 1533 ntTSL 2 BASIC21.92■■□□□ 1.1
PTCHD3Q3KNS1 UROS-204ENST00000368797 1313 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
PTCHD3Q3KNS1 AC005703.6-201ENST00000623265 1329 ntBASIC21.92■■□□□ 1.1
PTCHD3Q3KNS1 TFPT-201ENST00000391757 774 ntTSL 5 BASIC21.92■■□□□ 1.1
PTCHD3Q3KNS1 TFPT-202ENST00000391758 804 ntAPPRIS ALT2 TSL 1 (best) BASIC21.92■■□□□ 1.1
PTCHD3Q3KNS1 IL15RA-209ENST00000397255 759 ntAPPRIS ALT2 TSL 5 BASIC21.92■■□□□ 1.1
PTCHD3Q3KNS1 IL15RA-216ENST00000530685 660 ntTSL 5 BASIC21.92■■□□□ 1.1
PTCHD3Q3KNS1 KRAS-204ENST00000557334 1052 ntTSL 5 BASIC21.92■■□□□ 1.1
PTCHD3Q3KNS1 TMC6-218ENST00000591436 1155 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
PTCHD3Q3KNS1 FAM193A-211ENST00000637812 4885 ntAPPRIS ALT2 TSL 5 BASIC21.92■■□□□ 1.1
PTCHD3Q3KNS1 PDLIM2-202ENST00000308354 2236 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
PTCHD3Q3KNS1 PDLIM2-203ENST00000339162 2226 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
PTCHD3Q3KNS1 HOMER3-204ENST00000539827 1979 ntAPPRIS P3 TSL 1 (best) BASIC21.92■■□□□ 1.1
PTCHD3Q3KNS1 CPOX-201ENST00000264193 2825 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
PTCHD3Q3KNS1 PITX2-209ENST00000557119 1889 ntTSL 2 BASIC21.92■■□□□ 1.1
PTCHD3Q3KNS1 AC019069.1-201ENST00000610008 1333 ntBASIC21.91■■□□□ 1.1
PTCHD3Q3KNS1 CACTIN-AS1-201ENST00000592274 1913 ntTSL 2 BASIC21.91■■□□□ 1.1
PTCHD3Q3KNS1 PABPC1L-202ENST00000217074 1263 ntTSL 5 BASIC21.91■■□□□ 1.1
PTCHD3Q3KNS1 MT2A-201ENST00000245185 786 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
PTCHD3Q3KNS1 ERRFI1-204ENST00000474874 479 ntTSL 3 BASIC21.91■■□□□ 1.1
PTCHD3Q3KNS1 UBFD1-208ENST00000567264 642 ntAPPRIS ALT2 TSL 5 BASIC21.91■■□□□ 1.1
PTCHD3Q3KNS1 AC006455.5-202ENST00000615248 2284 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
PTCHD3Q3KNS1 SPAG7-205ENST00000573366 1668 ntTSL 3 BASIC21.91■■□□□ 1.1
PTCHD3Q3KNS1 RABEP2-201ENST00000357573 2175 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
PTCHD3Q3KNS1 DENND1B-204ENST00000367396 2177 ntAPPRIS P3 TSL 1 (best) BASIC21.91■■□□□ 1.1
PTCHD3Q3KNS1 DIXDC1-205ENST00000529225 1945 ntTSL 5 BASIC21.9■■□□□ 1.1
PTCHD3Q3KNS1 CCR10-203ENST00000591765 1942 ntTSL 3 BASIC21.9■■□□□ 1.1
PTCHD3Q3KNS1 PCK2-201ENST00000216780 2357 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
Retrieved 100 of 98,524 protein–RNA pairs in 27.5 ms