Protein–RNA interactions for Protein: Q03395

ROM1, Rod outer segment membrane protein 1, humanhuman

Predictions only

Length 351 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ROM1Q03395 GATA4-207ENST00000532059 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC19.73■□□□□ 0.75
ROM1Q03395 COMMD5-201ENST00000305103 1373 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
ROM1Q03395 SPG21-202ENST00000416889 1533 ntTSL 2 BASIC19.72■□□□□ 0.75
ROM1Q03395 ESRRAP2-201ENST00000418437 1549 ntBASIC19.72■□□□□ 0.75
ROM1Q03395 PHACTR2-208ENST00000440869 2569 ntAPPRIS ALT2 TSL 2 BASIC19.72■□□□□ 0.75
ROM1Q03395 TPRN-202ENST00000409012 2718 ntAPPRIS P2 TSL 1 (best) BASIC19.72■□□□□ 0.75
ROM1Q03395 ARIH2OS-201ENST00000408959 1598 ntAPPRIS P1 BASIC19.72■□□□□ 0.75
ROM1Q03395 QDPR-202ENST00000428702 1278 ntTSL 2 BASIC19.72■□□□□ 0.75
ROM1Q03395 GADD45A-205ENST00000617962 1142 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
ROM1Q03395 SPOCK3-222ENST00000512681 1457 ntTSL 2 BASIC19.72■□□□□ 0.75
ROM1Q03395 PAOX-206ENST00000480071 1324 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
ROM1Q03395 EP400NL-214ENST00000641289 2402 ntBASIC19.72■□□□□ 0.75
ROM1Q03395 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC19.71■□□□□ 0.75
ROM1Q03395 ZBTB46-202ENST00000302995 2335 ntAPPRIS P1 TSL 2 BASIC19.71■□□□□ 0.75
ROM1Q03395 HTRA2-201ENST00000258080 2370 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
ROM1Q03395 ECEL1P1-201ENST00000373592 1742 ntBASIC19.71■□□□□ 0.75
ROM1Q03395 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC19.71■□□□□ 0.75
ROM1Q03395 CNPY3-202ENST00000394142 954 ntTSL 5 BASIC19.71■□□□□ 0.75
ROM1Q03395 TSPAN10-204ENST00000611590 1068 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
ROM1Q03395 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC19.71■□□□□ 0.75
ROM1Q03395 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC19.71■□□□□ 0.75
ROM1Q03395 DPH1-203ENST00000570477 1747 ntAPPRIS ALT2 TSL 2 BASIC19.71■□□□□ 0.75
ROM1Q03395 CRLF1-201ENST00000392386 1792 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
ROM1Q03395 H2AFY2-201ENST00000373255 1980 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
ROM1Q03395 USF2-207ENST00000595068 1612 ntTSL 5 BASIC19.7■□□□□ 0.74
ROM1Q03395 RNF39-201ENST00000244360 2206 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
ROM1Q03395 APOE-201ENST00000252486 1208 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
ROM1Q03395 NKX2-8-201ENST00000258829 1261 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
ROM1Q03395 CDKN3-202ENST00000335183 893 ntAPPRIS P2 TSL 1 (best) BASIC19.7■□□□□ 0.74
ROM1Q03395 AC005540.1-201ENST00000413911 919 ntTSL 3 BASIC19.7■□□□□ 0.74
ROM1Q03395 CCDC37-AS1-202ENST00000506660 986 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
ROM1Q03395 CDKN3-211ENST00000611205 874 ntAPPRIS ALT2 TSL 5 BASIC19.7■□□□□ 0.74
ROM1Q03395 AC064853.3-201ENST00000641801 1658 ntAPPRIS P1 BASIC19.7■□□□□ 0.74
ROM1Q03395 C8orf82-202ENST00000524821 2476 ntAPPRIS P2 TSL 1 (best) BASIC19.7■□□□□ 0.74
ROM1Q03395 ASB6-201ENST00000277458 2330 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
ROM1Q03395 DPEP2-204ENST00000572888 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
ROM1Q03395 COMT-203ENST00000403184 2217 ntTSL 2 BASIC19.7■□□□□ 0.74
ROM1Q03395 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC19.69■□□□□ 0.74
ROM1Q03395 LINC00526-201ENST00000581067 1875 ntBASIC19.69■□□□□ 0.74
ROM1Q03395 UBE3C-209ENST00000611269 1866 ntTSL 2 BASIC19.69■□□□□ 0.74
ROM1Q03395 NRSN1-204ENST00000378491 2354 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
ROM1Q03395 RIOX1-201ENST00000304061 2429 ntAPPRIS P1 BASIC19.69■□□□□ 0.74
ROM1Q03395 NAXE-203ENST00000368235 1125 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
ROM1Q03395 ELOC-207ENST00000522337 816 ntAPPRIS P1 TSL 2 BASIC19.69■□□□□ 0.74
ROM1Q03395 PKNOX2-AS1-201ENST00000532316 586 ntTSL 3 BASIC19.69■□□□□ 0.74
ROM1Q03395 AL121906.1-201ENST00000606866 440 ntTSL 3 BASIC19.69■□□□□ 0.74
ROM1Q03395 KCNAB3-201ENST00000303790 2458 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
ROM1Q03395 TERT-206ENST00000508104 2486 ntTSL 5 BASIC19.69■□□□□ 0.74
ROM1Q03395 CLDN5-203ENST00000413119 1760 ntTSL 2 BASIC19.69■□□□□ 0.74
ROM1Q03395 CELF5-201ENST00000292672 1854 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
ROM1Q03395 AL353803.4-201ENST00000565882 1934 ntBASIC19.68■□□□□ 0.74
ROM1Q03395 DNAJC25-GNG10-201ENST00000374294 1448 ntAPPRIS P1 TSL 2 BASIC19.68■□□□□ 0.74
ROM1Q03395 CCDC106-205ENST00000588740 1404 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
ROM1Q03395 CREG1-201ENST00000370509 1974 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
ROM1Q03395 CTDSPL-206ENST00000443503 4640 ntAPPRIS ALT1 TSL 1 (best) BASIC19.68■□□□□ 0.74
ROM1Q03395 SNX5-217ENST00000606557 1087 ntBASIC19.68■□□□□ 0.74
ROM1Q03395 AC012354.3-201ENST00000623734 483 ntBASIC19.68■□□□□ 0.74
ROM1Q03395 TMEM235-205ENST00000586400 2272 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
ROM1Q03395 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC19.68■□□□□ 0.74
ROM1Q03395 DLL3-202ENST00000356433 2055 ntAPPRIS P1 TSL 2 BASIC19.67■□□□□ 0.74
ROM1Q03395 TCF3-203ENST00000395423 2779 ntTSL 5 BASIC19.67■□□□□ 0.74
ROM1Q03395 PRELID2-201ENST00000334744 2140 ntTSL 2 BASIC19.67■□□□□ 0.74
ROM1Q03395 LSR-202ENST00000354900 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
ROM1Q03395 EYA2-203ENST00000357410 2465 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
ROM1Q03395 SLC25A11-201ENST00000225665 1897 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
ROM1Q03395 AC103834.1-201ENST00000520383 144 ntBASIC19.67■□□□□ 0.74
ROM1Q03395 GAS1-201ENST00000298743 2827 ntAPPRIS P1 BASIC19.67■□□□□ 0.74
ROM1Q03395 KLHDC9-203ENST00000392192 1333 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
ROM1Q03395 ZNF395-210ENST00000523095 1790 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
ROM1Q03395 AC073188.6-202ENST00000616616 2281 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
ROM1Q03395 CCDC7-201ENST00000277657 1899 ntAPPRIS P2 TSL 1 (best) BASIC19.67■□□□□ 0.74
ROM1Q03395 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC19.67■□□□□ 0.74
ROM1Q03395 CREB3L3-205ENST00000602257 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
ROM1Q03395 SIGLEC15-201ENST00000389474 1573 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
ROM1Q03395 C16orf72-201ENST00000327827 5953 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
ROM1Q03395 YY1AP1-212ENST00000404643 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
ROM1Q03395 CD63-201ENST00000257857 1070 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
ROM1Q03395 BRI3-201ENST00000297290 780 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
ROM1Q03395 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC19.66■□□□□ 0.74
ROM1Q03395 QDPR-208ENST00000513615 1188 ntTSL 2 BASIC19.66■□□□□ 0.74
ROM1Q03395 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
ROM1Q03395 LSR-203ENST00000360798 1963 ntTSL 2 BASIC19.66■□□□□ 0.74
ROM1Q03395 GPSM1-204ENST00000429455 2057 ntTSL 3 BASIC19.66■□□□□ 0.74
ROM1Q03395 ZC3H14-219ENST00000556945 2075 ntTSL 5 BASIC19.66■□□□□ 0.74
ROM1Q03395 AC127496.7-201ENST00000625110 1798 ntBASIC19.65■□□□□ 0.74
ROM1Q03395 RAP2A-201ENST00000245304 5487 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
ROM1Q03395 HAR1A-201ENST00000433161 1882 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
ROM1Q03395 MSL1-203ENST00000577454 2081 ntTSL 2 BASIC19.65■□□□□ 0.74
ROM1Q03395 ILDR2-208ENST00000529387 1238 ntTSL 5 BASIC19.65■□□□□ 0.74
ROM1Q03395 EIF3J-203ENST00000535391 925 ntTSL 2 BASIC19.65■□□□□ 0.74
ROM1Q03395 AC064853.4-201ENST00000641394 363 ntAPPRIS P1 BASIC19.65■□□□□ 0.74
ROM1Q03395 TDRKH-206ENST00000440583 2296 ntTSL 5 BASIC19.65■□□□□ 0.74
ROM1Q03395 REST-206ENST00000612429 1376 ntTSL 5 BASIC19.65■□□□□ 0.74
ROM1Q03395 REST-207ENST00000616975 1370 ntTSL 5 BASIC19.65■□□□□ 0.74
ROM1Q03395 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
ROM1Q03395 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
ROM1Q03395 IL15RA-204ENST00000379977 1626 ntAPPRIS P3 TSL 1 (best) BASIC19.65■□□□□ 0.74
ROM1Q03395 SYT6-209ENST00000610222 1707 ntAPPRIS P1 TSL 5 BASIC19.65■□□□□ 0.74
ROM1Q03395 GNB2-201ENST00000303210 1878 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
ROM1Q03395 SLC25A42-201ENST00000318596 3120 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 17.1 ms