Protein–RNA interactions for Protein: P55283

CDH4, Cadherin-4, humanhuman

Predictions only

Length 916 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH4P55283 AL122058.1-201ENST00000412321 1166 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
CDH4P55283 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC23.06■■□□□ 1.28
CDH4P55283 AL139246.5-201ENST00000606645 996 ntBASIC23.06■■□□□ 1.28
CDH4P55283 DXO-201ENST00000337523 1628 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
CDH4P55283 AC144652.1-201ENST00000609974 1624 ntBASIC23.06■■□□□ 1.28
CDH4P55283 ZC3H14-223ENST00000557607 1983 ntTSL 5 BASIC23.06■■□□□ 1.28
CDH4P55283 XBP1-201ENST00000216037 1850 ntAPPRIS P2 TSL 1 (best) BASIC23.06■■□□□ 1.28
CDH4P55283 CAPN10-207ENST00000391984 2644 ntAPPRIS P2 TSL 1 (best) BASIC23.06■■□□□ 1.28
CDH4P55283 B3GALT4-204ENST00000451237 1694 ntAPPRIS P1 BASIC23.06■■□□□ 1.28
CDH4P55283 SYT6-210ENST00000641643 1587 ntBASIC23.06■■□□□ 1.28
CDH4P55283 LEFTY1-201ENST00000272134 1626 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
CDH4P55283 METTL21A-210ENST00000458426 1366 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
CDH4P55283 OSCAR-209ENST00000616215 2016 ntAPPRIS ALT2 TSL 5 BASIC23.05■■□□□ 1.28
CDH4P55283 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC23.05■■□□□ 1.28
CDH4P55283 CARD19-201ENST00000375464 855 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
CDH4P55283 AC009086.3-201ENST00000623486 1008 ntBASIC23.05■■□□□ 1.28
CDH4P55283 SEPT4-205ENST00000426861 1906 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
CDH4P55283 CAMK2N1-201ENST00000375078 2336 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
CDH4P55283 FLOT1-201ENST00000376389 1912 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
CDH4P55283 SNX18-201ENST00000326277 2063 ntTSL 2 BASIC23.04■■□□□ 1.28
CDH4P55283 CCDC85B-201ENST00000312579 1524 ntAPPRIS P1 BASIC23.04■■□□□ 1.28
CDH4P55283 TADA2B-201ENST00000310074 4350 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
CDH4P55283 ZSWIM6-201ENST00000252744 5501 ntAPPRIS P1 TSL 5 BASIC23.04■■□□□ 1.28
CDH4P55283 UNC93B3-201ENST00000308076 687 ntBASIC23.04■■□□□ 1.28
CDH4P55283 WDR86-AS1-204ENST00000489632 751 ntTSL 3 BASIC23.04■■□□□ 1.28
CDH4P55283 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC23.04■■□□□ 1.28
CDH4P55283 AC110285.6-201ENST00000617652 491 ntBASIC23.04■■□□□ 1.28
CDH4P55283 SF1-220ENST00000626028 704 ntTSL 2 BASIC23.04■■□□□ 1.28
CDH4P55283 IQCJ-SCHIP1-202ENST00000460298 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC23.04■■□□□ 1.28
CDH4P55283 C7orf26-202ENST00000359073 1762 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
CDH4P55283 MAP3K3-210ENST00000584573 2480 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
CDH4P55283 PYCARD-202ENST00000350605 696 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
CDH4P55283 CBLN2-209ENST00000585159 2406 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
CDH4P55283 RABGGTA-202ENST00000399409 2265 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
CDH4P55283 TMEM102-201ENST00000323206 1973 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
CDH4P55283 TMEM102-202ENST00000396568 1962 ntAPPRIS P1 TSL 2 BASIC23.03■■□□□ 1.28
CDH4P55283 ADARB2-202ENST00000381310 1810 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
CDH4P55283 FZD9-201ENST00000344575 2338 ntAPPRIS P1 BASIC23.03■■□□□ 1.28
CDH4P55283 IFFO2-203ENST00000455833 6188 ntAPPRIS P1 TSL 5 BASIC23.03■■□□□ 1.28
CDH4P55283 FAM220A-201ENST00000313324 2214 ntTSL 1 (best) BASIC23.02■■□□□ 1.28
CDH4P55283 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC23.02■■□□□ 1.28
CDH4P55283 DEAF1-201ENST00000382409 2500 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
CDH4P55283 LYRM1-201ENST00000219168 1626 ntAPPRIS P1 TSL 2 BASIC23.02■■□□□ 1.28
CDH4P55283 AC006455.2-201ENST00000429931 906 ntBASIC23.02■■□□□ 1.28
CDH4P55283 TYROBP-203ENST00000544690 522 ntTSL 1 (best) BASIC23.02■■□□□ 1.28
CDH4P55283 IDH2-202ENST00000540499 1453 ntTSL 2 BASIC23.02■■□□□ 1.28
CDH4P55283 AC012645.1-201ENST00000515455 1650 ntTSL 1 (best) BASIC23.02■■□□□ 1.28
CDH4P55283 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC23.01■■□□□ 1.27
CDH4P55283 HMGA2-206ENST00000536545 1788 ntTSL 1 (best) BASIC23.01■■□□□ 1.27
CDH4P55283 AC079630.1-202ENST00000618127 1840 ntBASIC23.01■■□□□ 1.27
CDH4P55283 RAB11FIP1-203ENST00000522727 1866 ntTSL 1 (best) BASIC23.01■■□□□ 1.27
CDH4P55283 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
CDH4P55283 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC23.01■■□□□ 1.27
CDH4P55283 LYPD2-201ENST00000359228 594 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
CDH4P55283 ZNF32-202ENST00000395797 1201 ntAPPRIS P1 TSL 2 BASIC23.01■■□□□ 1.27
CDH4P55283 SMIM29-205ENST00000468145 903 ntTSL 2 BASIC23.01■■□□□ 1.27
CDH4P55283 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
CDH4P55283 NRL-205ENST00000560550 788 ntTSL 1 (best) BASIC23.01■■□□□ 1.27
CDH4P55283 DUX4L4-201ENST00000566884 1269 ntBASIC23.01■■□□□ 1.27
CDH4P55283 RALB-208ENST00000631312 311 ntTSL 5 BASIC23.01■■□□□ 1.27
CDH4P55283 NPAS3-203ENST00000357798 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC23.01■■□□□ 1.27
CDH4P55283 LRRC73-201ENST00000372441 2121 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
CDH4P55283 RAD21L1-202ENST00000402452 1707 ntTSL 5 BASIC23■■□□□ 1.27
CDH4P55283 EML2-209ENST00000587152 2763 ntAPPRIS ALT2 TSL 2 BASIC23■■□□□ 1.27
CDH4P55283 SERBP1P1-201ENST00000396021 1160 ntBASIC23■■□□□ 1.27
CDH4P55283 PTCHD3P2-201ENST00000424937 1205 ntBASIC23■■□□□ 1.27
CDH4P55283 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC23■■□□□ 1.27
CDH4P55283 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC23■■□□□ 1.27
CDH4P55283 TGFBR3L-202ENST00000565886 1260 ntAPPRIS P1 TSL 5 BASIC23■■□□□ 1.27
CDH4P55283 PPP1R14A-204ENST00000591291 433 ntTSL 5 BASIC23■■□□□ 1.27
CDH4P55283 AL138724.1-201ENST00000606771 1088 ntBASIC23■■□□□ 1.27
CDH4P55283 AL136162.1-201ENST00000607711 1078 ntBASIC23■■□□□ 1.27
CDH4P55283 AC091982.4-201ENST00000623943 726 ntTSL 2 BASIC23■■□□□ 1.27
CDH4P55283 GRK4-202ENST00000398051 2068 ntTSL 1 (best) BASIC23■■□□□ 1.27
CDH4P55283 AL591684.2-201ENST00000605970 1594 ntTSL 5 BASIC23■■□□□ 1.27
CDH4P55283 LSR-201ENST00000347609 1880 ntAPPRIS ALT2 TSL 1 (best) BASIC23■■□□□ 1.27
CDH4P55283 LSR-213ENST00000605618 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC23■■□□□ 1.27
CDH4P55283 SPON2-222ENST00000617421 2156 ntAPPRIS P1 TSL 5 BASIC23■■□□□ 1.27
CDH4P55283 MMP21-201ENST00000368808 1919 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
CDH4P55283 NPAS3-201ENST00000346562 5847 ntAPPRIS P3 TSL 1 (best) BASIC23■■□□□ 1.27
CDH4P55283 LINC01529-204ENST00000636474 1715 ntBASIC22.99■■□□□ 1.27
CDH4P55283 ST3GAL4-213ENST00000530591 1459 ntAPPRIS P3 TSL 1 (best) BASIC22.99■■□□□ 1.27
CDH4P55283 DTNB-206ENST00000404103 2384 ntAPPRIS ALT2 TSL 5 BASIC22.99■■□□□ 1.27
CDH4P55283 TCP1-202ENST00000392168 1878 ntTSL 5 BASIC22.99■■□□□ 1.27
CDH4P55283 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC22.99■■□□□ 1.27
CDH4P55283 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC22.99■■□□□ 1.27
CDH4P55283 OIP5-AS1-208ENST00000560706 473 ntTSL 5 BASIC22.99■■□□□ 1.27
CDH4P55283 ZNF264-206ENST00000600531 774 ntTSL 2 BASIC22.99■■□□□ 1.27
CDH4P55283 MCUB-201ENST00000394650 2278 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
CDH4P55283 MYCBPAP-202ENST00000419930 1640 ntAPPRIS ALT2 TSL 1 (best) BASIC22.99■■□□□ 1.27
CDH4P55283 ZCCHC2-201ENST00000269499 5959 ntAPPRIS P2 TSL 5 BASIC22.99■■□□□ 1.27
CDH4P55283 PCOLCE2-201ENST00000295992 2021 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
CDH4P55283 H19-210ENST00000439725 1929 ntTSL 2 BASIC22.98■■□□□ 1.27
CDH4P55283 ZFP91-CNTF-201ENST00000389919 2319 ntAPPRIS P5 TSL 2 BASIC22.98■■□□□ 1.27
CDH4P55283 ZNF837-202ENST00000597582 1969 ntAPPRIS P1 TSL 2 BASIC22.98■■□□□ 1.27
CDH4P55283 PDIA2-201ENST00000219406 1698 ntAPPRIS P2 TSL 1 (best) BASIC22.98■■□□□ 1.27
CDH4P55283 PBX2P1-201ENST00000493219 1291 ntBASIC22.98■■□□□ 1.27
CDH4P55283 AC106739.1-201ENST00000617035 715 ntBASIC22.98■■□□□ 1.27
CDH4P55283 AC092902.2-206ENST00000625484 846 ntTSL 5 BASIC22.98■■□□□ 1.27
CDH4P55283 CPLX1-203ENST00000505203 2011 ntTSL 2 BASIC22.98■■□□□ 1.27
Retrieved 100 of 98,524 protein–RNA pairs in 12.6 ms