Protein–RNA interactions for Protein: P53675

CLTCL1, Clathrin heavy chain 2, humanhuman

Predictions only

Length 1,640 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLTCL1P53675 SUGCT-201ENST00000335693 1645 ntAPPRIS ALT2 TSL 1 (best) BASIC32.66■■■□□ 2.82
CLTCL1P53675 SNCB-206ENST00000614675 1407 ntTSL 1 (best) BASIC32.66■■■□□ 2.82
CLTCL1P53675 DOK3-205ENST00000501403 1872 ntAPPRIS P1 TSL 5 BASIC32.66■■■□□ 2.82
CLTCL1P53675 MAP2K2-201ENST00000262948 1734 ntAPPRIS P1 TSL 1 (best) BASIC32.66■■■□□ 2.82
CLTCL1P53675 AC010525.1-201ENST00000585559 441 ntBASIC32.66■■■□□ 2.82
CLTCL1P53675 OSCAR-211ENST00000617140 1547 ntAPPRIS ALT2 TSL 5 BASIC32.66■■■□□ 2.82
CLTCL1P53675 AC135731.1-201ENST00000569415 2548 ntBASIC32.65■■■□□ 2.82
CLTCL1P53675 TMEM202-AS1-202ENST00000565181 2325 ntBASIC32.65■■■□□ 2.82
CLTCL1P53675 NDUFB2-201ENST00000247866 504 ntAPPRIS P1 TSL 1 (best) BASIC32.65■■■□□ 2.82
CLTCL1P53675 C20orf144-201ENST00000375222 571 ntAPPRIS P1 TSL 1 (best) BASIC32.65■■■□□ 2.82
CLTCL1P53675 PHF10-202ENST00000366780 1589 ntAPPRIS ALT2 TSL 5 BASIC32.65■■■□□ 2.82
CLTCL1P53675 GNAS-201ENST00000265620 1866 ntAPPRIS P3 TSL 1 (best) BASIC32.65■■■□□ 2.82
CLTCL1P53675 MYCL-201ENST00000372815 1944 ntTSL 1 (best) BASIC32.64■■■□□ 2.82
CLTCL1P53675 RTCA-202ENST00000370126 538 ntTSL 1 (best) BASIC32.64■■■□□ 2.82
CLTCL1P53675 AC126544.1-201ENST00000580842 1059 ntBASIC32.64■■■□□ 2.82
CLTCL1P53675 AC011446.1-201ENST00000591825 458 ntTSL 2 BASIC32.64■■■□□ 2.82
CLTCL1P53675 MED17-227ENST00000640521 2047 ntTSL 5 BASIC32.64■■■□□ 2.82
CLTCL1P53675 STX18-205ENST00000505286 1380 ntTSL 1 (best) BASIC32.64■■■□□ 2.82
CLTCL1P53675 MBD3-202ENST00000434436 2439 ntAPPRIS P1 TSL 1 (best) BASIC32.64■■■□□ 2.81
CLTCL1P53675 AC008443.4-201ENST00000503314 456 ntTSL 4 BASIC32.63■■■□□ 2.81
CLTCL1P53675 AC010203.1-202ENST00000550096 695 ntTSL 3 BASIC32.63■■■□□ 2.81
CLTCL1P53675 HOMER3-206ENST00000594439 982 ntTSL 1 (best) BASIC32.63■■■□□ 2.81
CLTCL1P53675 SENP3-201ENST00000321337 2611 ntAPPRIS P1 TSL 1 (best) BASIC32.63■■■□□ 2.81
CLTCL1P53675 HDGFL2-210ENST00000621835 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC32.63■■■□□ 2.81
CLTCL1P53675 ZC3H14-223ENST00000557607 1983 ntTSL 5 BASIC32.63■■■□□ 2.81
CLTCL1P53675 C2orf82-201ENST00000331342 465 ntAPPRIS P2 TSL 1 (best) BASIC32.62■■■□□ 2.81
CLTCL1P53675 CCDC28B-201ENST00000373602 1089 ntAPPRIS P1 TSL 1 (best) BASIC32.62■■■□□ 2.81
CLTCL1P53675 UBE2E2-203ENST00000425792 1248 ntAPPRIS P1 TSL 2 BASIC32.62■■■□□ 2.81
CLTCL1P53675 AC012414.1-201ENST00000556676 535 ntBASIC32.62■■■□□ 2.81
CLTCL1P53675 AL499627.2-201ENST00000606283 725 ntBASIC32.62■■■□□ 2.81
CLTCL1P53675 ANKRD53-201ENST00000272421 2185 ntAPPRIS P3 TSL 1 (best) BASIC32.62■■■□□ 2.81
CLTCL1P53675 AK1-201ENST00000223836 736 ntTSL 3 BASIC32.62■■■□□ 2.81
CLTCL1P53675 LY6E-201ENST00000292494 1181 ntAPPRIS P2 TSL 1 (best) BASIC32.62■■■□□ 2.81
CLTCL1P53675 LINC01678-201ENST00000411694 863 ntTSL 5 BASIC32.62■■■□□ 2.81
CLTCL1P53675 IRF3-207ENST00000593922 1494 ntTSL 1 (best) BASIC32.62■■■□□ 2.81
CLTCL1P53675 SNUPN-201ENST00000308588 1513 ntAPPRIS P1 TSL 1 (best) BASIC32.62■■■□□ 2.81
CLTCL1P53675 ARIH2OS-201ENST00000408959 1598 ntAPPRIS P1 BASIC32.62■■■□□ 2.81
CLTCL1P53675 B3GAT3-201ENST00000265471 1641 ntAPPRIS P1 TSL 1 (best) BASIC32.62■■■□□ 2.81
CLTCL1P53675 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC32.62■■■□□ 2.81
CLTCL1P53675 SPANXA2-OT1-201ENST00000622372 1686 ntTSL 2 BASIC32.62■■■□□ 2.81
CLTCL1P53675 ZNF444-211ENST00000592949 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC32.61■■■□□ 2.81
CLTCL1P53675 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC32.61■■■□□ 2.81
CLTCL1P53675 C2CD4B-201ENST00000380392 1579 ntAPPRIS P1 TSL 2 BASIC32.61■■■□□ 2.81
CLTCL1P53675 AC133637.1-201ENST00000624115 1537 ntBASIC32.61■■■□□ 2.81
CLTCL1P53675 LIMD2-205ENST00000578402 1534 ntAPPRIS P1 TSL 1 (best) BASIC32.6■■■□□ 2.81
CLTCL1P53675 NMRAL1-202ENST00000404295 1233 ntAPPRIS P1 TSL 1 (best) BASIC32.6■■■□□ 2.81
CLTCL1P53675 KRT18P5-201ENST00000436075 1291 ntBASIC32.6■■■□□ 2.81
CLTCL1P53675 JARID2-AS1-201ENST00000441978 455 ntTSL 1 (best) BASIC32.6■■■□□ 2.81
CLTCL1P53675 OR2I1P-207ENST00000453522 948 ntBASIC32.6■■■□□ 2.81
CLTCL1P53675 H1FX-AS1-204ENST00000511998 917 ntTSL 5 BASIC32.6■■■□□ 2.81
CLTCL1P53675 ACAD8-202ENST00000374752 1797 ntTSL 2 BASIC32.6■■■□□ 2.81
CLTCL1P53675 ACOT1-201ENST00000311148 1713 ntAPPRIS P1 TSL 1 (best) BASIC32.6■■■□□ 2.81
CLTCL1P53675 AC142381.3-201ENST00000568208 1670 ntBASIC32.6■■■□□ 2.81
CLTCL1P53675 TMEM61-201ENST00000371268 1097 ntAPPRIS P1 TSL 1 (best) BASIC32.59■■■□□ 2.81
CLTCL1P53675 DUX4L2-201ENST00000561772 1275 ntBASIC32.59■■■□□ 2.81
CLTCL1P53675 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC32.59■■■□□ 2.81
CLTCL1P53675 DUX4L6-201ENST00000626483 1275 ntBASIC32.59■■■□□ 2.81
CLTCL1P53675 DUX4L1-201ENST00000627662 1275 ntBASIC32.59■■■□□ 2.81
CLTCL1P53675 DUX4L8-201ENST00000629013 1275 ntBASIC32.59■■■□□ 2.81
CLTCL1P53675 DUX4L3-201ENST00000630187 1275 ntBASIC32.59■■■□□ 2.81
CLTCL1P53675 DUX4L7-201ENST00000630678 1275 ntBASIC32.59■■■□□ 2.81
CLTCL1P53675 DUX4L5-201ENST00000630834 1275 ntBASIC32.59■■■□□ 2.81
CLTCL1P53675 PPP1R14C-201ENST00000361131 2152 ntAPPRIS P1 TSL 1 (best) BASIC32.59■■■□□ 2.81
CLTCL1P53675 USF3-203ENST00000491165 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC32.59■■■□□ 2.81
CLTCL1P53675 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC32.59■■■□□ 2.81
CLTCL1P53675 SESN3-202ENST00000416495 1408 ntTSL 1 (best) BASIC32.59■■■□□ 2.81
CLTCL1P53675 SPHK1-210ENST00000592299 1821 ntAPPRIS P3 TSL 1 (best) BASIC32.59■■■□□ 2.81
CLTCL1P53675 HOXB7-201ENST00000239165 1371 ntAPPRIS P1 TSL 1 (best) BASIC32.59■■■□□ 2.81
CLTCL1P53675 CLYBL-202ENST00000376354 1127 ntTSL 5 BASIC32.59■■■□□ 2.81
CLTCL1P53675 YBX1P1-201ENST00000445822 960 ntBASIC32.59■■■□□ 2.81
CLTCL1P53675 LINC01942-201ENST00000521373 513 ntTSL 4 BASIC32.59■■■□□ 2.81
CLTCL1P53675 AL121749.1-201ENST00000635993 1768 ntTSL 5 BASIC32.58■■■□□ 2.81
CLTCL1P53675 CREM-210ENST00000374721 2020 ntTSL 5 BASIC32.58■■■□□ 2.81
CLTCL1P53675 STARD3NL-202ENST00000396013 1365 ntAPPRIS P1 TSL 5 BASIC32.58■■■□□ 2.81
CLTCL1P53675 AICDA-202ENST00000537228 667 ntTSL 5 BASIC32.58■■■□□ 2.81
CLTCL1P53675 SCUBE1-208ENST00000615096 1119 ntTSL 2 BASIC32.58■■■□□ 2.81
CLTCL1P53675 TTC34-202ENST00000637179 1775 ntAPPRIS P2 TSL 5 BASIC32.58■■■□□ 2.81
CLTCL1P53675 RILP-201ENST00000301336 1771 ntAPPRIS P1 TSL 1 (best) BASIC32.57■■■□□ 2.8
CLTCL1P53675 ARF1-213ENST00000540651 1972 ntAPPRIS P1 TSL 2 BASIC32.57■■■□□ 2.8
CLTCL1P53675 UBE2C-202ENST00000335046 737 ntTSL 2 BASIC32.57■■■□□ 2.8
CLTCL1P53675 PRDX4-202ENST00000379341 1005 ntAPPRIS P1 TSL 1 (best) BASIC32.57■■■□□ 2.8
CLTCL1P53675 CDC20-202ENST00000372462 1777 ntAPPRIS P1 TSL 1 (best) BASIC32.56■■■□□ 2.8
CLTCL1P53675 PARL-206ENST00000435888 1098 ntTSL 5 BASIC32.56■■■□□ 2.8
CLTCL1P53675 AC034268.1-201ENST00000441047 882 ntBASIC32.56■■■□□ 2.8
CLTCL1P53675 AP001107.5-202ENST00000533759 948 ntTSL 5 BASIC32.56■■■□□ 2.8
CLTCL1P53675 MLF2-206ENST00000539187 1110 ntAPPRIS P1 TSL 1 (best) BASIC32.56■■■□□ 2.8
CLTCL1P53675 PYCARD-AS1-201ENST00000561916 1095 ntTSL 2 BASIC32.56■■■□□ 2.8
CLTCL1P53675 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC32.56■■■□□ 2.8
CLTCL1P53675 CDIPT-210ENST00000570016 1346 ntAPPRIS P1 TSL 5 BASIC32.56■■■□□ 2.8
CLTCL1P53675 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC32.56■■■□□ 2.8
CLTCL1P53675 SLBP-206ENST00000489418 1977 ntAPPRIS P2 TSL 1 (best) BASIC32.55■■■□□ 2.8
CLTCL1P53675 TSEN15-207ENST00000533373 618 ntTSL 2 BASIC32.55■■■□□ 2.8
CLTCL1P53675 AC006538.2-201ENST00000586572 543 ntAPPRIS P1 TSL 4 BASIC32.55■■■□□ 2.8
CLTCL1P53675 ESR2-202ENST00000341099 2060 ntAPPRIS P1 TSL 1 (best) BASIC32.55■■■□□ 2.8
CLTCL1P53675 GJD4-201ENST00000321660 1580 ntAPPRIS P1 TSL 1 (best) BASIC32.55■■■□□ 2.8
CLTCL1P53675 USP25-203ENST00000351097 2158 ntTSL 1 (best) BASIC32.55■■■□□ 2.8
CLTCL1P53675 TTLL1-201ENST00000266254 1645 ntAPPRIS P1 TSL 1 (best) BASIC32.55■■■□□ 2.8
CLTCL1P53675 PYCARD-201ENST00000247470 990 ntAPPRIS P1 TSL 1 (best) BASIC32.55■■■□□ 2.8
CLTCL1P53675 TSEN34-201ENST00000302937 2294 ntAPPRIS P1 TSL 1 (best) BASIC32.54■■■□□ 2.8
CLTCL1P53675 TLX1-203ENST00000467928 1838 ntTSL 1 (best) BASIC32.54■■■□□ 2.8
Retrieved 100 of 98,524 protein–RNA pairs in 12.7 ms