Protein–RNA interactions for Protein: P50479

PDLIM4, PDZ and LIM domain protein 4, humanhuman

Predictions only

Length 330 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM4P50479 FBXW5-201ENST00000325285 2274 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
PDLIM4P50479 KCNMA1-283ENST00000640523 5425 ntAPPRIS ALT2 TSL 5 BASIC19.06■□□□□ 0.64
PDLIM4P50479 TRIR-201ENST00000242784 970 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
PDLIM4P50479 RBM38-205ENST00000440234 686 ntTSL 2 BASIC19.06■□□□□ 0.64
PDLIM4P50479 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC19.06■□□□□ 0.64
PDLIM4P50479 MIR5787-201ENST00000611784 55 ntBASIC19.06■□□□□ 0.64
PDLIM4P50479 SYNGR3-206ENST00000618464 1213 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
PDLIM4P50479 CTBP2-211ENST00000494626 2014 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
PDLIM4P50479 OSCAR-207ENST00000391761 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC19.06■□□□□ 0.64
PDLIM4P50479 CCDC106-205ENST00000588740 1404 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
PDLIM4P50479 HLA-L-211ENST00000482052 1765 ntBASIC19.06■□□□□ 0.64
PDLIM4P50479 TRIM72-202ENST00000613872 1573 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
PDLIM4P50479 C1QTNF1-207ENST00000580454 1396 ntAPPRIS P1 TSL 5 BASIC19.06■□□□□ 0.64
PDLIM4P50479 DTNB-211ENST00000407661 2420 ntAPPRIS ALT1 TSL 1 (best) BASIC19.05■□□□□ 0.64
PDLIM4P50479 PLD4-201ENST00000392593 6515 ntAPPRIS P3 TSL 1 (best) BASIC19.05■□□□□ 0.64
PDLIM4P50479 SRR-201ENST00000344595 2728 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
PDLIM4P50479 LINC01578-209ENST00000557682 2683 ntTSL 2 BASIC19.05■□□□□ 0.64
PDLIM4P50479 WTAP-201ENST00000337387 1622 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
PDLIM4P50479 WISP2-203ENST00000372868 1600 ntAPPRIS P1 TSL 3 BASIC19.05■□□□□ 0.64
PDLIM4P50479 FAM43A-201ENST00000329759 2494 ntAPPRIS P1 BASIC19.05■□□□□ 0.64
PDLIM4P50479 CTAG2-202ENST00000369585 748 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
PDLIM4P50479 AC068580.1-201ENST00000446489 252 ntTSL 3 BASIC19.05■□□□□ 0.64
PDLIM4P50479 AC007009.1-201ENST00000458624 429 ntTSL 2 BASIC19.05■□□□□ 0.64
PDLIM4P50479 AC008764.7-201ENST00000593779 1081 ntBASIC19.05■□□□□ 0.64
PDLIM4P50479 MAG-206ENST00000597035 542 ntTSL 4 BASIC19.05■□□□□ 0.64
PDLIM4P50479 ARHGEF9-210ENST00000623517 2143 ntTSL 2 BASIC19.05■□□□□ 0.64
PDLIM4P50479 RASEF-201ENST00000340717 1765 ntTSL 2 BASIC19.05■□□□□ 0.64
PDLIM4P50479 MATK-202ENST00000395040 1907 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
PDLIM4P50479 ZFYVE19-201ENST00000299173 1555 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
PDLIM4P50479 OSCAR-205ENST00000359649 1892 ntAPPRIS P4 TSL 2 BASIC19.05■□□□□ 0.64
PDLIM4P50479 CBWD2-203ENST00000416503 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
PDLIM4P50479 HSD11B1L-203ENST00000342970 1620 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
PDLIM4P50479 PLPP1-202ENST00000307259 1597 ntAPPRIS ALT1 TSL 1 (best) BASIC19.04■□□□□ 0.64
PDLIM4P50479 FJX1-201ENST00000317811 2450 ntAPPRIS P1 BASIC19.04■□□□□ 0.64
PDLIM4P50479 OPN3-201ENST00000366554 2620 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
PDLIM4P50479 AC026271.2-201ENST00000428091 497 ntBASIC19.04■□□□□ 0.64
PDLIM4P50479 STOX2-205ENST00000513034 807 ntTSL 3 BASIC19.04■□□□□ 0.64
PDLIM4P50479 NRIP3-203ENST00000531090 980 ntTSL 2 BASIC19.04■□□□□ 0.64
PDLIM4P50479 HOXA4-204ENST00000610970 1728 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
PDLIM4P50479 AC136469.2-201ENST00000623944 1028 ntBASIC19.04■□□□□ 0.64
PDLIM4P50479 EHBP1L1-201ENST00000309295 5185 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
PDLIM4P50479 SNF8-202ENST00000502492 2319 ntAPPRIS P3 TSL 1 (best) BASIC19.03■□□□□ 0.64
PDLIM4P50479 ALG1L9P-201ENST00000508969 2165 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
PDLIM4P50479 MYBL1-201ENST00000517885 1714 ntTSL 5 BASIC19.03■□□□□ 0.64
PDLIM4P50479 THRA-201ENST00000264637 2538 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
PDLIM4P50479 RABL6-202ENST00000357466 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
PDLIM4P50479 NKILA-201ENST00000613231 537 ntTSL 4 BASIC19.03■□□□□ 0.64
PDLIM4P50479 UBAP1L-203ENST00000559089 1694 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
PDLIM4P50479 SNRNP70-201ENST00000221448 1603 ntTSL 2 BASIC19.03■□□□□ 0.64
PDLIM4P50479 AGBL5-201ENST00000323064 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
PDLIM4P50479 SLBP-206ENST00000489418 1977 ntAPPRIS P2 TSL 1 (best) BASIC19.02■□□□□ 0.64
PDLIM4P50479 KREMEN2-205ENST00000575769 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.64
PDLIM4P50479 ZNF365-206ENST00000395255 1674 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
PDLIM4P50479 SYNDIG1-201ENST00000376862 2522 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
PDLIM4P50479 TARSL2-207ENST00000615656 2356 ntAPPRIS ALT2 TSL 5 BASIC19.02■□□□□ 0.64
PDLIM4P50479 METTL23-201ENST00000341249 1155 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
PDLIM4P50479 AC099791.1-201ENST00000416440 715 ntBASIC19.02■□□□□ 0.64
PDLIM4P50479 AC006455.2-201ENST00000429931 906 ntBASIC19.02■□□□□ 0.64
PDLIM4P50479 PPM1N-207ENST00000451287 1293 ntAPPRIS P1 TSL 5 BASIC19.02■□□□□ 0.64
PDLIM4P50479 PRSS22-203ENST00000571228 1037 ntTSL 2 BASIC19.02■□□□□ 0.64
PDLIM4P50479 SLC22A18-201ENST00000312221 1628 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
PDLIM4P50479 RBFOX1-206ENST00000535565 1599 ntTSL 2 BASIC19.02■□□□□ 0.63
PDLIM4P50479 ATP5A1-220ENST00000593152 2258 ntTSL 2 BASIC19.02■□□□□ 0.63
PDLIM4P50479 AC079834.2-201ENST00000609776 1949 ntBASIC19.02■□□□□ 0.63
PDLIM4P50479 ALDH1A3-203ENST00000557963 1670 ntBASIC19.01■□□□□ 0.63
PDLIM4P50479 TMEM64-203ENST00000458549 4997 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
PDLIM4P50479 PCP4L1-201ENST00000504449 1424 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
PDLIM4P50479 FUT11-201ENST00000372841 2056 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
PDLIM4P50479 USF2-207ENST00000595068 1612 ntTSL 5 BASIC19.01■□□□□ 0.63
PDLIM4P50479 STOX1-202ENST00000399162 935 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
PDLIM4P50479 STOX1-203ENST00000399165 1135 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
PDLIM4P50479 CREB3L2-203ENST00000452463 1105 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
PDLIM4P50479 C15orf61-202ENST00000557807 769 ntTSL 2 BASIC19.01■□□□□ 0.63
PDLIM4P50479 MYDGF-203ENST00000599630 713 ntTSL 2 BASIC19.01■□□□□ 0.63
PDLIM4P50479 LRRC75A-203ENST00000470794 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
PDLIM4P50479 BTBD7-205ENST00000554565 2697 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
PDLIM4P50479 ZNF174-202ENST00000344823 1557 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
PDLIM4P50479 THRA-209ENST00000584985 2421 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
PDLIM4P50479 FEZ2-203ENST00000379245 2097 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
PDLIM4P50479 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC19■□□□□ 0.63
PDLIM4P50479 TBX1-203ENST00000359500 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
PDLIM4P50479 CBWD2-201ENST00000259199 1812 ntAPPRIS P3 TSL 1 (best) BASIC19■□□□□ 0.63
PDLIM4P50479 CBLN2-209ENST00000585159 2406 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
PDLIM4P50479 FAM222B-213ENST00000583522 556 ntTSL 2 BASIC19■□□□□ 0.63
PDLIM4P50479 SDF4-202ENST00000360001 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
PDLIM4P50479 CLDN5-201ENST00000403084 2357 ntBASIC19■□□□□ 0.63
PDLIM4P50479 C8orf58-201ENST00000289989 2016 ntAPPRIS P3 TSL 5 BASIC19■□□□□ 0.63
PDLIM4P50479 VGF-203ENST00000611537 1622 ntTSL 5 BASIC19■□□□□ 0.63
PDLIM4P50479 RAP2A-201ENST00000245304 5487 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
PDLIM4P50479 TSNARE1-208ENST00000524325 1963 ntAPPRIS P3 TSL 2 BASIC18.99■□□□□ 0.63
PDLIM4P50479 BMP2K-204ENST00000502871 3195 ntAPPRIS P3 TSL 1 (best) BASIC18.99■□□□□ 0.63
PDLIM4P50479 FAIM-202ENST00000360570 1157 ntAPPRIS ALT1 TSL 3 BASIC18.99■□□□□ 0.63
PDLIM4P50479 HYI-204ENST00000372432 1066 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
PDLIM4P50479 MIR3181-201ENST00000578512 73 ntBASIC18.99■□□□□ 0.63
PDLIM4P50479 GSX2-205ENST00000611459 1262 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
PDLIM4P50479 WNT11-201ENST00000322563 1930 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
PDLIM4P50479 RPL13-202ENST00000393099 2385 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
PDLIM4P50479 LINC01342-201ENST00000416774 1620 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
PDLIM4P50479 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC18.99■□□□□ 0.63
PDLIM4P50479 SLC10A4-201ENST00000273861 1790 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 13.9 ms